RchiOBHm_Chr2g0138421

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000289
Physical Location & Seq
Forward (+)
56119627 .. 56121069
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50911

Sequence Viewer

Length: 1338 bp
ATGCGAAATTGCCATTTGATTTTTGTGCAGTCCATCTTCCTTAAAAAATCCAACCTTTTAAGAACGATGGCTTCGGACAACTCACCATCACCACTATTGGAATTGCCCGACTTTCCTGGGGGAGCTGATGGATTTTTGTATATTTACAAGTTGTGTTATGGAATCAGAGGTCCACTCACTGCTTCAAAATCTCTCCCTTTCCTCTGTGCGGCTGATTATCTGGACCTGAAGGATGAACTAATTTCACAAACTATGAGCTATCTTTCTGAAGGCGCACTGTATGAGAATGGGGAAACATGTGCAGAGATTTTGAAGCATTGCGATGACCGTAGTGTTCGAGAGTATGCCAACAGATCTCTGATTGCACAGAGATGTATCCAGACCGTTGACTCCCATGTGTCAAAGTATTTTCTCAGGAGACACCTACCTGAAGGAGTAGGAGATGAGGCTAAGAAAGCATTGCTTGAAGCAGTTGCTCCTTTGTATTTTAGTCAAGTGTGTCAACCACCAGATGTTAAACACCTGATTCGCCTACACAGGGCTGCAGTATCTCTTGTGGCTTCCCAAGAATGTTTGAAATGCCTTGAGCATTGTATCGGTGCACATCTTCATGAAGTTTCTGCAGAAGCTTTGTGTGGAAGCCATCATTTTGACAGCAACACGGTTCATCGCCTTGTCAACCATTATCTCCGCAAGCATGAGGGTGGTGAAGAGATTGTCGCTGATGATAATCAAATAGTTCCTGAAAGCACAGTCGTGGTGGCTAATCTTGTTGATAAGTACCTCCTGGAAAAGGTTGCTAATTTGTCAGTGGCTCAATTTCAAGAATTAGCCGCCTCAGTCCGCCATGCTAGAGCTGTGGATGACAATCTCTATTTTGCTATTACTTTGTATCTACAGTACCACCCTAACTTGGCTGAACCAGAGAGAGAGCAGATATGTCAATCTTTGAATTGCGAAAATCTCACTCCTGAAGTTCGGATTCAAGCAGCAAACAGCCGTAATTTACCCTTGCGAACAGTTGTTGAGCTTTTCTATCTCAACAACCAGGAGCTTAAGGATGAAGTTGAAGAGCATAAGAACCGGATTTCTTATCTTGAGAGTGTGAACATGATGATGAATGAAGTCATTGAGAATCTAAGGAAAGAAGTGGAGAAGTTGGGCAGTGGGAATTCAAAAGGATCAAACAAGTGGACAACCATGTCTAAGAAATTGGGCTTCAGCAAGAGGCCTCTGCAACTGGGGTGTCGTACAAGTCAGGATGCTGTGCACAACCCAAACCCTAGGAGGAAGGACAACATTCTACCGGAAAATACAGACTCCTCCTCTGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

445

Amino Acids

50.23

Weight (kDa)

6.0

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 111 - 325 2.2e-33 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1201
AciI CCGC 4 cut(s) 209, 691, 834, 844
AclWI GGATC 1 cut(s) 1189
AcsI RAATTY 1 cut(s) 1171
AcuI CTGAAG 5 cut(s) 248, 288, 450, 993, 1204
AfaI GTAC 3 cut(s) 782, 902, 1252
AfiI CCNNNNNNNGG 4 cut(s) 208, 538, 793, 913
AflII CTTAAG 1 cut(s) 1055
AflIII ACRYGT 1 cut(s) 296
AgsI TTSAA 9 cut(s) 186, 313, 467, 577, 824, 952, 986, 1070, 1176
AjnI CCWGG 3 cut(s) 115, 786, 1047
AleI CACNNNNGTG 1 cut(s) 755
AluBI AGCT 6 cut(s) 125, 258, 629, 857, 1030, 1054
AluI AGCT 6 cut(s) 125, 258, 629, 857, 1030, 1054
Alw21I GWGCWC 2 cut(s) 604, 1272
Alw26I GTCTC 1 cut(s) 412
Alw44I GTGCAC 2 cut(s) 600, 1268
AlwI GGATC 1 cut(s) 1189
AoxI GGCC 1 cut(s) 1229
ApaLI GTGCAC 2 cut(s) 600, 1268
ApeKI GCWGC 2 cut(s) 542, 989
ApoI RAATTY 1 cut(s) 1171
AspA2I CCTAGG 1 cut(s) 1283
AspLEI GCGC 1 cut(s) 275
AspS9I GGNCC 2 cut(s) 170, 223
AsuHPI GGTGA 3 cut(s) 75, 81, 719
AvaII GGWCC 2 cut(s) 170, 223
AvrII CCTAGG 1 cut(s) 1283
BaeGI GKGCMC 2 cut(s) 604, 1272
Bbv12I GWGCWC 2 cut(s) 604, 1272
BbvI GCAGC 2 cut(s) 529, 1001
BccI CCATC 5 cut(s) 41, 61, 94, 122, 651
BceAI ACGGC 1 cut(s) 984
BciT130I CCWGG 3 cut(s) 117, 788, 1049
BciVI GTATCC 1 cut(s) 386
BcoDI GTCTC 1 cut(s) 412
BfaI CTAG 2 cut(s) 852, 1284
BfmI CTRYAG 3 cut(s) 543, 621, 896
BfrI CTTAAG 1 cut(s) 1055
BfuI GTATCC 1 cut(s) 386
BglII AGATCT 1 cut(s) 353
BisI GCNGC 4 cut(s) 210, 543, 834, 990
BlnI CCTAGG 1 cut(s) 1283
BlsI GCNGC 4 cut(s) 211, 544, 835, 991
Bme1390I CCNGG 3 cut(s) 117, 788, 1049
Bme18I GGWCC 2 cut(s) 170, 223
BmgT120I GGNCC 2 cut(s) 170, 223
BmrFI CCNGG 3 cut(s) 117, 788, 1049
BmrI ACTGGG 1 cut(s) 1250
BmsI GCATC 1 cut(s) 1252
BmuI ACTGGG 1 cut(s) 1250
BplI GAGNNNNNCTC 2 cut(s) 159, 191
BpuEI CTTGAG 2 cut(s) 605, 1118
BsaBI GATNNNNATC 2 cut(s) 729, 867
BsaJI CCNNGG 2 cut(s) 116, 1283
BsaWI WCCGGW 2 cut(s) 1083, 1306
Bsc4I CCNNNNNNNGG 4 cut(s) 208, 538, 793, 913
Bse1I ACTGG 1 cut(s) 1245
Bse3DI GCAATG 2 cut(s) 316, 458
Bse8I GATNNNNATC 2 cut(s) 729, 867
BseBI CCWGG 3 cut(s) 117, 788, 1049
BseDI CCNNGG 2 cut(s) 116, 1283
BseGI GGATG 4 cut(s) 238, 868, 1066, 1267
BseJI GATNNNNATC 2 cut(s) 729, 867
BseLI CCNNNNNNNGG 4 cut(s) 208, 538, 793, 913
BseMI GCAATG 2 cut(s) 316, 458
BseMII CTCAG 3 cut(s) 427, 852, 1320
BseNI ACTGG 1 cut(s) 1245
BseRI GAGGAG 2 cut(s) 1312, 1315
BseSI GKGCMC 2 cut(s) 604, 1272
BseXI GCAGC 2 cut(s) 529, 1001
BsgI GTGCAG 2 cut(s) 47, 321
BshFI GGCC 1 cut(s) 1231
BsiHKAI GWGCWC 2 cut(s) 604, 1272
BsiSI CCGG 2 cut(s) 1084, 1307
BslI CCNNNNNNNGG 4 cut(s) 208, 538, 793, 913
BsmAI GTCTC 1 cut(s) 412
BsnI GGCC 1 cut(s) 1231
Bsp1286I GDGCHC 2 cut(s) 604, 1272
Bsp143I GATC 2 cut(s) 353, 1181
BspACI CCGC 4 cut(s) 209, 691, 834, 844
BspANI GGCC 1 cut(s) 1231
BspCNI CTCAG 3 cut(s) 426, 851, 1321
BspHI TCATGA 1 cut(s) 610
BspMAI CTGCAG 2 cut(s) 547, 625
BspPI GGATC 1 cut(s) 1189
BspQI GCTCTTC 1 cut(s) 1065
BspTI CTTAAG 1 cut(s) 1055
BsrDI GCAATG 2 cut(s) 316, 458
BsrI ACTGG 1 cut(s) 1245
BssECI CCNNGG 2 cut(s) 116, 1283
BssMI GATC 2 cut(s) 353, 1181
BssT1I CCWWGG 1 cut(s) 1283
Bst2UI CCWGG 3 cut(s) 117, 788, 1049
Bst4CI ACNGT 7 cut(s) 279, 329, 385, 664, 754, 900, 1021
Bst6I CTCTTC 2 cut(s) 705, 1065
BstAFI CTTAAG 1 cut(s) 1055
BstC8I GCNNGC 1 cut(s) 695
BstDEI CTNAG 6 cut(s) 413, 450, 838, 1139, 1206, 1329
BstENI CCTNNNNNAGG 1 cut(s) 791
BstF5I GGATG 4 cut(s) 238, 868, 1066, 1267
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 2 cut(s) 356, 1184
BstMAI GTCTC 1 cut(s) 412
BstMBI GATC 2 cut(s) 353, 1181
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstNI CCWGG 3 cut(s) 117, 788, 1049
BstNSI RCATGY 1 cut(s) 300
BstSCI CCNGG 3 cut(s) 115, 786, 1047
BstSFI CTRYAG 3 cut(s) 543, 621, 896
BstSLI GKGCMC 2 cut(s) 604, 1272
BstV1I GCAGC 2 cut(s) 529, 1001
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BsuI GTATCC 1 cut(s) 386
BsuRI GGCC 1 cut(s) 1231
BtgZI GCGATG 2 cut(s) 336, 653
BtsCI GGATG 4 cut(s) 238, 868, 1066, 1267
BtsI GCAGTG 2 cut(s) 177, 1171
BtsIMutI CAGTG 4 cut(s) 177, 275, 816, 1171
Cac8I GCNNGC 1 cut(s) 695
CciI TCATGA 1 cut(s) 610
CfoI GCGC 1 cut(s) 275
Cfr13I GGNCC 2 cut(s) 170, 223
Csp6I GTAC 3 cut(s) 781, 901, 1251
CviAII CATG 7 cut(s) 297, 395, 611, 698, 848, 1111, 1201
CviQI GTAC 3 cut(s) 781, 901, 1251
DdeI CTNAG 6 cut(s) 413, 450, 838, 1139, 1206, 1329
DpnI GATC 2 cut(s) 355, 1183
DpnII GATC 2 cut(s) 353, 1181
DrdI GACNNNNNNGTC 1 cut(s) 1201
DseDI GACNNNNNNGTC 1 cut(s) 1201
Eam1104I CTCTTC 2 cut(s) 705, 1065
EarI CTCTTC 2 cut(s) 705, 1065
EciI GGCGGA 1 cut(s) 833
Eco130I CCWWGG 1 cut(s) 1283
Eco147I AGGCCT 1 cut(s) 1231
Eco47I GGWCC 2 cut(s) 170, 223
Eco57I CTGAAG 5 cut(s) 248, 288, 450, 993, 1204
EcoNI CCTNNNNNAGG 1 cut(s) 791
EcoRI GAATTC 1 cut(s) 1171
EcoRII CCWGG 3 cut(s) 115, 786, 1047
EcoT14I CCWWGG 1 cut(s) 1283
ErhI CCWWGG 1 cut(s) 1283
FaeI CATG 7 cut(s) 300, 398, 614, 701, 851, 1114, 1204
FalI AAGNNNNNCTT 2 cut(s) 447, 479
FatI CATG 7 cut(s) 296, 394, 610, 697, 847, 1110, 1200
Fnu4HI GCNGC 4 cut(s) 210, 543, 834, 990
FokI GGATG 4 cut(s) 245, 875, 1073, 1274
Fsp4HI GCNGC 4 cut(s) 210, 543, 834, 990
FspBI CTAG 2 cut(s) 852, 1284
GlaI GCGC 1 cut(s) 274
GluI GCNGC 4 cut(s) 210, 543, 834, 990
HaeIII GGCC 1 cut(s) 1231
HapII CCGG 2 cut(s) 1084, 1307
HhaI GCGC 1 cut(s) 275
Hin1II CATG 7 cut(s) 300, 398, 614, 701, 851, 1114, 1204
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HincII GTYRAC 3 cut(s) 388, 503, 679
HindII GTYRAC 3 cut(s) 388, 503, 679
HindIII AAGCTT 1 cut(s) 627
HinfI GANTC 6 cut(s) 162, 389, 526, 982, 1135, 1319
HpaII CCGG 2 cut(s) 1084, 1307
HphI GGTGA 3 cut(s) 75, 81, 719
Hpy166II GTNNAC 8 cut(s) 173, 388, 503, 602, 679, 1108, 1194, 1270
Hpy188I TCNGA 6 cut(s) 76, 167, 268, 360, 981, 1330
Hpy8I GTNNAC 8 cut(s) 173, 388, 503, 602, 679, 1108, 1194, 1270
HpyAV CCTTC 4 cut(s) 223, 263, 425, 1285
HpyCH4III ACNGT 7 cut(s) 279, 329, 385, 664, 754, 900, 1021
HpyCH4V TGCA 8 cut(s) 28, 302, 365, 545, 602, 623, 1237, 1270
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpyF3I CTNAG 6 cut(s) 413, 450, 838, 1139, 1206, 1329
Hsp92II CATG 7 cut(s) 300, 398, 614, 701, 851, 1114, 1204
HspAI GCGC 1 cut(s) 273
Kzo9I GATC 2 cut(s) 353, 1181
LguI GCTCTTC 1 cut(s) 1065
LmnI GCTCC 3 cut(s) 122, 481, 1051
Lsp1109I GCAGC 2 cut(s) 529, 1001
LweI GCATC 1 cut(s) 1252
MaeI CTAG 2 cut(s) 852, 1284
MalI GATC 2 cut(s) 355, 1183
MboI GATC 2 cut(s) 353, 1181
MboII GAAGA 4 cut(s) 28, 599, 722, 1082
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 2 cut(s) 604, 1272
MlyI GAGTC 2 cut(s) 383, 1313
MmeI TCCRAC 1 cut(s) 75
MseI TTAA 4 cut(s) 42, 59, 516, 1056
MslI CAYNNNNRTG 6 cut(s) 321, 370, 609, 702, 755, 1115
MspCI CTTAAG 1 cut(s) 1055
MspI CCGG 2 cut(s) 1084, 1307
MspR9I CCNGG 3 cut(s) 117, 788, 1049
MvaI CCWGG 3 cut(s) 117, 788, 1049
MwoI GCNNNNNNNGC 1 cut(s) 455
NdeII GATC 2 cut(s) 353, 1181
NlaIII CATG 7 cut(s) 300, 398, 614, 701, 851, 1114, 1204
NspI RCATGY 1 cut(s) 300
OliI CACNNNNGTG 1 cut(s) 755
PagI TCATGA 1 cut(s) 610
PceI AGGCCT 1 cut(s) 1231
PciI ACATGT 1 cut(s) 296
PciSI GCTCTTC 1 cut(s) 1065
PfeI GAWTC 4 cut(s) 162, 526, 982, 1135
PfoI TCCNGGA 1 cut(s) 786
PkrI GCNGC 4 cut(s) 211, 544, 835, 991
PleI GAGTC 2 cut(s) 383, 1313
PpsI GAGTC 2 cut(s) 383, 1313
PscI ACATGT 1 cut(s) 296
Psp6I CCWGG 3 cut(s) 115, 786, 1047
PspGI CCWGG 3 cut(s) 115, 786, 1047
PspPI GGNCC 2 cut(s) 170, 223
PstI CTGCAG 2 cut(s) 547, 625
PsuI RGATCY 1 cut(s) 353
RsaI GTAC 3 cut(s) 782, 902, 1252
RsaNI GTAC 3 cut(s) 781, 901, 1251
RseI CAYNNNNRTG 6 cut(s) 321, 370, 609, 702, 755, 1115
SapI GCTCTTC 1 cut(s) 1065
SaqAI TTAA 4 cut(s) 42, 59, 516, 1056
SatI GCNGC 4 cut(s) 210, 543, 834, 990
Sau3AI GATC 2 cut(s) 353, 1181
Sau96I GGNCC 2 cut(s) 170, 223
SchI GAGTC 2 cut(s) 383, 1313
ScrFI CCNGG 3 cut(s) 117, 788, 1049
SduI GDGCHC 2 cut(s) 604, 1272
SfaNI GCATC 1 cut(s) 1252
SfcI CTRYAG 3 cut(s) 543, 621, 896
SinI GGWCC 2 cut(s) 170, 223
SmiMI CAYNNNNRTG 6 cut(s) 321, 370, 609, 702, 755, 1115
SmlI CTYRAG 3 cut(s) 584, 1055, 1097
SmoI CTYRAG 3 cut(s) 584, 1055, 1097
SseBI AGGCCT 1 cut(s) 1231
SsiI CCGC 4 cut(s) 209, 691, 834, 844
SspMI CTAG 2 cut(s) 852, 1284
StuI AGGCCT 1 cut(s) 1231
StyD4I CCNGG 3 cut(s) 115, 786, 1047
StyI CCWWGG 1 cut(s) 1283
TaaI ACNGT 7 cut(s) 279, 329, 385, 664, 754, 900, 1021
TaqI TCGA 1 cut(s) 337
TauI GCSGC 2 cut(s) 212, 836
TfiI GAWTC 4 cut(s) 162, 526, 982, 1135
Tru1I TTAA 4 cut(s) 42, 59, 516, 1056
Tru9I TTAA 4 cut(s) 42, 59, 516, 1056
TscAI CASTG 4 cut(s) 184, 282, 816, 1171
TseI GCWGC 2 cut(s) 542, 989
TspDTI ATGAA 7 cut(s) 249, 599, 627, 656, 1077, 1133, 1137
TspRI CASTG 4 cut(s) 184, 282, 816, 1171
Vha464I CTTAAG 1 cut(s) 1055
VneI GTGCAC 2 cut(s) 600, 1268
VpaK11BI GGWCC 2 cut(s) 170, 223
XagI CCTNNNNNAGG 1 cut(s) 791
XapI RAATTY 1 cut(s) 1171
XceI RCATGY 1 cut(s) 300
XmaJI CCTAGG 1 cut(s) 1283
XspI CTAG 2 cut(s) 852, 1284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.