pycom11g10510

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000289
Physical Location & Seq
Reverse (-)
8926022 .. 8927128
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g10510.1

Sequence Viewer

Length: 1107 bp
ATGCGCTTCAAATGCGTATGCAAGTCTTGGTCCTCTCTCACCCACAGCCCTTCATTTGTTGAGGCCCATCACCACTTTGGATGCAACAAGTACGCTTACCTCCTTCTCACCACTTGGGACCAAGTCACAAGCCAGCAACACTTCTCCTCAGAAACCGACCAACAGGGAGGTCTTACACCCGCCACACGTGTTCTAACTCTTCCAACGCTGCGAACCAATGGATGTCGCTATACTGCACAAAGTATCAATGGCTTGGTATGTCTGTACCTTCAAGTAAGGACCACAATACCTCCATTCCCAATCAAATTGATCGATGGAAACCCAGTTCGCATATTTAACCCTTGCACACGAGAGTCTATTGCTCTTCCCCACACTTCATCCGCATGTAGCACAATCTATGTTACACATCATGTTGGGTTTAGTCCTCTTGCAAACGAGTACAAGGTTCTCCAAGTGCAAAAGTTTGTCCGTGCTGGGAGTATACATTTTATGTTCAATGTAATCACATTGGGGATAAATTTGTGGAAATGCATAGAGGTAGACCTTAATAATCTCCCTTTTGATCCTCATAGATGCCTGTTTTATGAAGGAAGCGTGTACGTCAATGGGGCCATACATTGGATGAATAGGTCACAAAATATGATTGTGGGTTTCAACATTGAAGATGAAAAATTTAGCAGAGTGATCCAACTTCCTAAAGATTATAATCTTTTTAGGGTTGATCCGTTTATGGTTGAAGTGTGTGGACGTTTGGCTCTAGGCGACAGGGTGCAGTTGATGGGGCAAAATATAATGCGGTTATGGATTTTGAACGACTACGAAAATCAAGTGTGGGTTAAGGAGTCTTTCACTTTTGCCATTCAGTGGAGGGAGTTGGGATACCCTTTACATTTCTATACCATTCACACTGGGGAGTTCCTCGTCCAATTTCCAAGATTAAGTACGGACCAGGTCGACCTTGCGCGTGCGAGGGTGCATCTGTACGATATAAAGAGTGAAAGTTTTAGGAGTGATGAAATTGTTTTGCCCGCAGAATGGACATTTCGGAACAATACTTGGTTGAAGGTGCTTACTAGTTATGAGGATAGCATTGTGCCATTAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

369

Amino Acids

42.66

Weight (kDa)

8.02

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 45 - 340 4.2e-34 F-box associated beta propeller domain
FBA_1 PF07734 108 - 292 5.4e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 705
AccB7I CCANNNNNTGG 2 cut(s) 618, 864
AccI GTMKAC 3 cut(s) 481, 540, 954
AccII CGCG 1 cut(s) 964
AciI CCGC 4 cut(s) 180, 381, 796, 1029
AclWI GGATC 3 cut(s) 557, 679, 716
AcsI RAATTY 2 cut(s) 517, 671
AcvI CACGTG 1 cut(s) 188
AfaI GTAC 6 cut(s) 92, 266, 440, 599, 943, 983
AfiI CCNNNNNNNGG 3 cut(s) 618, 864, 1035
AflIII ACRYGT 2 cut(s) 185, 187
AgsI TTSAA 8 cut(s) 10, 272, 496, 655, 662, 737, 811, 1063
AhlI ACTAGT 1 cut(s) 1073
AjnI CCWGG 1 cut(s) 948
AloI GAACNNNNNNTCC 2 cut(s) 309, 341
AlwI GGATC 3 cut(s) 557, 679, 716
AoxI GGCC 2 cut(s) 63, 609
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 2 cut(s) 517, 671
AspLEI GCGC 2 cut(s) 6, 964
AspS9I GGNCC 6 cut(s) 30, 64, 118, 279, 609, 946
AsuHPI GGTGA 3 cut(s) 31, 62, 100
AvaII GGWCC 4 cut(s) 30, 118, 279, 946
BauI CACGAG 1 cut(s) 348
BbrPI CACGTG 1 cut(s) 188
BbvI GCAGC 1 cut(s) 195
BccI CCATC 3 cut(s) 75, 308, 772
BciT130I CCWGG 1 cut(s) 950
BciVI GTATCC 1 cut(s) 872
BcuI ACTAGT 1 cut(s) 1073
BfaI CTAG 2 cut(s) 758, 1074
BfuI GTATCC 1 cut(s) 872
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 950
Bme18I GGWCC 4 cut(s) 30, 118, 279, 946
BmgT120I GGNCC 6 cut(s) 30, 64, 118, 279, 609, 946
BmiI GGNNCC 2 cut(s) 119, 610
BmrFI CCNGG 1 cut(s) 950
BmrI ACTGGG 2 cut(s) 317, 918
BmsI GCATC 3 cut(s) 71, 563, 985
BmuI ACTGGG 2 cut(s) 317, 918
Bsa29I ATCGAT 1 cut(s) 312
BsaAI YACGTR 1 cut(s) 188
BsaBI GATNNNNATC 1 cut(s) 705
BsaXI ACNNNNNCTCC 2 cut(s) 274, 304
Bsc4I CCNNNNNNNGG 3 cut(s) 618, 864, 1035
Bse1I ACTGG 2 cut(s) 323, 913
Bse8I GATNNNNATC 1 cut(s) 705
BseBI CCWGG 1 cut(s) 950
BseCI ATCGAT 1 cut(s) 312
BseGI GGATG 4 cut(s) 86, 227, 377, 627
BseJI GATNNNNATC 1 cut(s) 705
BseLI CCNNNNNNNGG 3 cut(s) 618, 864, 1035
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 2 cut(s) 323, 913
BseRI GAGGAG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 195
BseYI CCCAGC 1 cut(s) 473
BsgI GTGCAG 2 cut(s) 219, 791
Bsh1236I CGCG 1 cut(s) 964
BshFI GGCC 2 cut(s) 65, 611
BshVI ATCGAT 1 cut(s) 312
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 3 cut(s) 618, 864, 1035
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 2 cut(s) 65, 611
Bsp143I GATC 4 cut(s) 309, 562, 684, 721
BspACI CCGC 4 cut(s) 180, 381, 796, 1029
BspANI GGCC 2 cut(s) 65, 611
BspCNI CTCAG 1 cut(s) 161
BspDI ATCGAT 1 cut(s) 312
BspFNI CGCG 1 cut(s) 964
BspLI GGNNCC 2 cut(s) 119, 610
BspPI GGATC 3 cut(s) 557, 679, 716
BspQI GCTCTTC 1 cut(s) 369
BsrI ACTGG 2 cut(s) 323, 913
BssMI GATC 4 cut(s) 309, 562, 684, 721
BssNAI GTATAC 1 cut(s) 482
BssSI CACGAG 1 cut(s) 348
Bst1107I GTATAC 1 cut(s) 482
Bst2BI CACGAG 1 cut(s) 348
Bst2UI CCWGG 1 cut(s) 950
Bst6I CTCTTC 2 cut(s) 204, 369
BstBAI YACGTR 1 cut(s) 188
BstC8I GCNNGC 3 cut(s) 134, 966, 1029
BstDEI CTNAG 1 cut(s) 148
BstF5I GGATG 4 cut(s) 86, 227, 377, 627
BstFNI CGCG 1 cut(s) 964
BstHHI GCGC 2 cut(s) 6, 964
BstKTI GATC 4 cut(s) 312, 565, 687, 724
BstMBI GATC 4 cut(s) 309, 562, 684, 721
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstNI CCWGG 1 cut(s) 950
BstNSI RCATGY 1 cut(s) 387
BstSCI CCNGG 1 cut(s) 948
BstUI CGCG 1 cut(s) 964
BstV1I GCAGC 1 cut(s) 195
BstZ17I GTATAC 1 cut(s) 482
Bsu15I ATCGAT 1 cut(s) 312
BsuI GTATCC 1 cut(s) 872
BsuRI GGCC 2 cut(s) 65, 611
BsuTUI ATCGAT 1 cut(s) 312
BtsCI GGATG 4 cut(s) 86, 227, 377, 627
BtsIMutI CAGTG 2 cut(s) 869, 906
Cac8I GCNNGC 3 cut(s) 134, 966, 1029
CfoI GCGC 2 cut(s) 6, 964
Cfr13I GGNCC 6 cut(s) 30, 64, 118, 279, 609, 946
ClaI ATCGAT 1 cut(s) 312
CsiI ACCWGGT 1 cut(s) 948
Csp6I GTAC 6 cut(s) 91, 265, 439, 598, 942, 982
CviAII CATG 2 cut(s) 384, 410
CviJI RGCY 6 cut(s) 48, 65, 132, 252, 611, 755
CviKI_1 RGCY 6 cut(s) 48, 65, 132, 252, 611, 755
CviQI GTAC 6 cut(s) 91, 265, 439, 598, 942, 982
DdeI CTNAG 1 cut(s) 148
DpnI GATC 4 cut(s) 311, 564, 686, 723
DpnII GATC 4 cut(s) 309, 562, 684, 721
Eam1104I CTCTTC 2 cut(s) 204, 369
EarI CTCTTC 2 cut(s) 204, 369
Eco47I GGWCC 4 cut(s) 30, 118, 279, 946
Eco72I CACGTG 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 948
EcoT22I ATGCAT 1 cut(s) 533
FaeI CATG 2 cut(s) 387, 413
FaqI GGGAC 1 cut(s) 131
FatI CATG 2 cut(s) 383, 409
FauI CCCGC 2 cut(s) 187, 1036
FblI GTMKAC 3 cut(s) 481, 540, 954
Fnu4HI GCNGC 1 cut(s) 209
FokI GGATG 4 cut(s) 93, 234, 364, 634
Fsp4HI GCNGC 1 cut(s) 209
FspBI CTAG 2 cut(s) 758, 1074
GlaI GCGC 2 cut(s) 5, 963
GluI GCNGC 1 cut(s) 209
GsaI CCCAGC 1 cut(s) 477
HaeIII GGCC 2 cut(s) 65, 611
HhaI GCGC 2 cut(s) 6, 964
Hin1II CATG 2 cut(s) 387, 413
Hin6I GCGC 2 cut(s) 4, 962
HinP1I GCGC 2 cut(s) 4, 962
HincII GTYRAC 1 cut(s) 955
HindII GTYRAC 1 cut(s) 955
HinfI GANTC 2 cut(s) 353, 842
HphI GGTGA 3 cut(s) 31, 62, 100
Hpy166II GTNNAC 5 cut(s) 482, 541, 598, 746, 955
Hpy188I TCNGA 2 cut(s) 151, 1047
Hpy8I GTNNAC 5 cut(s) 482, 541, 598, 746, 955
HpyAV CCTTC 5 cut(s) 60, 113, 278, 581, 1057
HpyCH4IV ACGT 3 cut(s) 187, 600, 748
HpyCH4V TGCA 9 cut(s) 21, 84, 236, 345, 431, 457, 531, 772, 976
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpyF3I CTNAG 1 cut(s) 148
HpySE526I ACGT 3 cut(s) 187, 600, 748
Hsp92II CATG 2 cut(s) 387, 413
HspAI GCGC 2 cut(s) 4, 962
Kzo9I GATC 4 cut(s) 309, 562, 684, 721
LguI GCTCTTC 1 cut(s) 369
LpnPI CCDG 9 cut(s) 146, 149, 336, 459, 590, 751, 894, 935, 962
Lsp1109I GCAGC 1 cut(s) 195
LweI GCATC 3 cut(s) 71, 563, 985
MabI ACCWGGT 1 cut(s) 948
MaeI CTAG 2 cut(s) 758, 1074
MaeII ACGT 3 cut(s) 187, 600, 748
MaeIII GTNAC 3 cut(s) 124, 400, 630
MalI GATC 4 cut(s) 311, 564, 686, 723
MboI GATC 4 cut(s) 309, 562, 684, 721
MboII GAAGA 3 cut(s) 191, 356, 674
MluCI AATT 5 cut(s) 305, 517, 671, 926, 1017
MlyI GAGTC 2 cut(s) 362, 851
MmeI TCCRAC 2 cut(s) 227, 712
Mph1103I ATGCAT 1 cut(s) 533
MseI TTAA 5 cut(s) 336, 546, 837, 938, 1100
MslI CAYNNNNRTG 2 cut(s) 382, 1102
MspR9I CCNGG 1 cut(s) 950
MvaI CCWGG 1 cut(s) 950
MvnI CGCG 1 cut(s) 964
MwoI GCNNNNNNNGC 1 cut(s) 12
NdeII GATC 4 cut(s) 309, 562, 684, 721
NlaIII CATG 2 cut(s) 387, 413
NlaIV GGNNCC 2 cut(s) 119, 610
NmuCI GTSAC 2 cut(s) 124, 630
NsiI ATGCAT 1 cut(s) 533
NspI RCATGY 1 cut(s) 387
PciSI GCTCTTC 1 cut(s) 369
PflFI GACNNNGTC 2 cut(s) 122, 950
PflMI CCANNNNNTGG 2 cut(s) 618, 864
PkrI GCNGC 1 cut(s) 210
PleI GAGTC 2 cut(s) 361, 850
PmaCI CACGTG 1 cut(s) 188
PmlI CACGTG 1 cut(s) 188
PpsI GAGTC 2 cut(s) 361, 850
Ppu21I YACGTR 1 cut(s) 188
PsiI TTATAA 1 cut(s) 705
Psp6I CCWGG 1 cut(s) 948
PspCI CACGTG 1 cut(s) 188
PspFI CCCAGC 1 cut(s) 473
PspGI CCWGG 1 cut(s) 948
PspN4I GGNNCC 2 cut(s) 119, 610
PspPI GGNCC 6 cut(s) 30, 64, 118, 279, 609, 946
PsyI GACNNNGTC 2 cut(s) 122, 950
RsaI GTAC 6 cut(s) 92, 266, 440, 599, 943, 983
RsaNI GTAC 6 cut(s) 91, 265, 439, 598, 942, 982
RseI CAYNNNNRTG 2 cut(s) 382, 1102
SalI GTCGAC 1 cut(s) 953
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 5 cut(s) 336, 546, 837, 938, 1100
SatI GCNGC 1 cut(s) 209
Sau3AI GATC 4 cut(s) 309, 562, 684, 721
Sau96I GGNCC 6 cut(s) 30, 64, 118, 279, 609, 946
SchI GAGTC 2 cut(s) 362, 851
ScrFI CCNGG 1 cut(s) 950
SexAI ACCWGGT 1 cut(s) 948
SfaNI GCATC 3 cut(s) 71, 563, 985
SinI GGWCC 4 cut(s) 30, 118, 279, 946
SmiMI CAYNNNNRTG 2 cut(s) 382, 1102
SpeI ACTAGT 1 cut(s) 1073
Sse9I AATT 5 cut(s) 305, 517, 671, 926, 1017
SsiI CCGC 4 cut(s) 180, 381, 796, 1029
SspMI CTAG 2 cut(s) 758, 1074
StyD4I CCNGG 1 cut(s) 948
TaiI ACGT 3 cut(s) 190, 603, 751
TaqI TCGA 2 cut(s) 312, 954
TasI AATT 5 cut(s) 305, 517, 671, 926, 1017
TatI WGTACW 1 cut(s) 438
Tru1I TTAA 5 cut(s) 336, 546, 837, 938, 1100
Tru9I TTAA 5 cut(s) 336, 546, 837, 938, 1100
TscAI CASTG 2 cut(s) 869, 913
TseFI GTSAC 2 cut(s) 124, 630
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 2 cut(s) 124, 630
TspDTI ATGAA 6 cut(s) 42, 366, 600, 638, 681, 1029
TspGWI ACGGA 3 cut(s) 458, 714, 959
TspRI CASTG 2 cut(s) 869, 913
Tth111I GACNNNGTC 2 cut(s) 122, 950
Van91I CCANNNNNTGG 2 cut(s) 618, 864
VpaK11BI GGWCC 4 cut(s) 30, 118, 279, 946
XapI RAATTY 2 cut(s) 517, 671
XceI RCATGY 1 cut(s) 387
XcmI CCANNNNNNNNNTGG 1 cut(s) 74
XmiI GTMKAC 3 cut(s) 481, 540, 954
XspI CTAG 2 cut(s) 758, 1074
Zsp2I ATGCAT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.