pycom13g01740

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000289
Physical Location & Seq
Reverse (-)
1153647 .. 1154392
746 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g01740.3

Sequence Viewer

Length: 609 bp
ATGTCCCTCCATATCAACCAAGATGGCAGTCTCTCACCCAGTCTCCCCAATATGCTGTGTACCAACGGCTTGGCTTGTTTTGTCTTTATTCATGAGCACCGCATTCGCGTATTTAATCCCTGCACCCGAGAGTCTATAACCCTTCCCTCCACTTCCAATTCACCCACCAGCTACCAATCTACTTCACCGGACATCAAACCCTGGGGAGCCGAGATTGGATATGGCAGAGTCTGCGAATTTTTACAGGAGTCATGGAGGCGCGTAGAGGTAGAGCACGATGATCTTCCATTTGATCATACTTTTTGGCGCATTGACATGAAAAGTGTGTGCCTCCATGGAGCCATACATTGGACACATGACGAAGAGAAATGTGTAGTGGTATATGACCTTGGAGAGCAAAGATTCAGAGTCATCCCATTTCCTCCAGAATTTGATGGTAACAGCCATCATTTTTGGGCAATTGTTGATGTGGGCGGATGTCTAGCGCTCACATATGACAAGGAGACGACTTCAACTTCATTTTTAGCAGGGTTAGAGTTGTGGATTTTGAAGGACTATCAAGATCAAGTACGGGTTAAGGAGTTGCTTATGTGCAATCCACACCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

203

Amino Acids

23.28

Weight (kDa)

5.48

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 348
AccII CGCG 2 cut(s) 108, 261
AciI CCGC 2 cut(s) 100, 474
AcsI RAATTY 2 cut(s) 236, 428
AfaI GTAC 2 cut(s) 61, 570
AfeI AGCGCT 1 cut(s) 486
AfiI CCNNNNNNNGG 1 cut(s) 348
AgeI ACCGGT 1 cut(s) 603
AgsI TTSAA 2 cut(s) 513, 550
AjnI CCWGG 1 cut(s) 200
AleI CACNNNNGTG 1 cut(s) 604
AluBI AGCT 1 cut(s) 171
AluI AGCT 1 cut(s) 171
Alw21I GWGCWC 2 cut(s) 99, 276
Alw26I GTCTC 3 cut(s) 35, 47, 497
AlwNI CAGNNNCTG 1 cut(s) 231
Ama87I CYCGRG 1 cut(s) 126
Aor51HI AGCGCT 1 cut(s) 486
ApoI RAATTY 2 cut(s) 236, 428
AsiGI ACCGGT 1 cut(s) 603
AspLEI GCGC 3 cut(s) 261, 309, 487
AsuHPI GGTGA 3 cut(s) 27, 153, 177
AvaI CYCGRG 1 cut(s) 126
Bbv12I GWGCWC 2 cut(s) 99, 276
BccI CCATC 3 cut(s) 17, 428, 453
BceAI ACGGC 1 cut(s) 82
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 1 cut(s) 202
BclI TGATCA 1 cut(s) 292
BcoDI GTCTC 3 cut(s) 35, 47, 497
BfaI CTAG 1 cut(s) 482
BfoI RGCGCY 1 cut(s) 488
Bme1390I CCNGG 1 cut(s) 202
BmeT110I CYCGRG 1 cut(s) 126
BmiI GGNNCC 2 cut(s) 208, 340
BmrFI CCNGG 1 cut(s) 202
BmrI ACTGGG 1 cut(s) 33
BmuI ACTGGG 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 408
BsaJI CCNNGG 4 cut(s) 200, 201, 334, 388
BsaWI WCCGGW 2 cut(s) 187, 603
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse118I RCCGGY 1 cut(s) 603
Bse1I ACTGG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 202
BseDI CCNNGG 4 cut(s) 200, 201, 334, 388
BseGI GGATG 2 cut(s) 411, 482
BseLI CCNNNNNNNGG 1 cut(s) 348
BseNI ACTGG 1 cut(s) 39
BsgI GTGCAG 1 cut(s) 106
Bsh1236I CGCG 2 cut(s) 108, 261
BshTI ACCGGT 1 cut(s) 603
BsiHKAI GWGCWC 2 cut(s) 99, 276
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 2 cut(s) 188, 604
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 3 cut(s) 35, 47, 497
BsmBI CGTCTC 1 cut(s) 497
BsmI GAATGC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 126
Bsp1286I GDGCHC 2 cut(s) 99, 276
Bsp143I GATC 3 cut(s) 280, 292, 562
Bsp19I CCATGG 1 cut(s) 334
BspACI CCGC 2 cut(s) 100, 474
BspFNI CGCG 2 cut(s) 108, 261
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 208, 340
BsrFI RCCGGY 1 cut(s) 603
BsrI ACTGG 1 cut(s) 39
BssAI RCCGGY 1 cut(s) 603
BssECI CCNNGG 4 cut(s) 200, 201, 334, 388
BssMI GATC 3 cut(s) 280, 292, 562
BssT1I CCWWGG 2 cut(s) 334, 388
Bst2UI CCWGG 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 357
BstAPI GCANNNNNTGC 1 cut(s) 231
BstDSI CCRYGG 1 cut(s) 334
BstF5I GGATG 2 cut(s) 411, 482
BstFNI CGCG 2 cut(s) 108, 261
BstH2I RGCGCY 1 cut(s) 488
BstHHI GCGC 3 cut(s) 261, 309, 487
BstKTI GATC 3 cut(s) 283, 295, 565
BstMAI GTCTC 3 cut(s) 35, 47, 497
BstMBI GATC 3 cut(s) 280, 292, 562
BstMWI GCNNNNNNNGC 1 cut(s) 231
BstNI CCWGG 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 200
BstUI CGCG 2 cut(s) 108, 261
BstXI CCANNNNNNTGG 1 cut(s) 70
BtgI CCRYGG 1 cut(s) 334
BtsCI GGATG 2 cut(s) 411, 482
CaiI CAGNNNCTG 1 cut(s) 231
CciI TCATGA 1 cut(s) 91
CfoI GCGC 3 cut(s) 261, 309, 487
Cfr10I RCCGGY 1 cut(s) 603
Csp6I GTAC 2 cut(s) 60, 569
CspAI ACCGGT 1 cut(s) 603
CviAII CATG 5 cut(s) 92, 252, 316, 335, 356
CviJI RGCY 6 cut(s) 69, 74, 171, 209, 341, 444
CviKI_1 RGCY 6 cut(s) 69, 74, 171, 209, 341, 444
CviQI GTAC 2 cut(s) 60, 569
DpnI GATC 3 cut(s) 282, 294, 564
DpnII GATC 3 cut(s) 280, 292, 562
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
EciI GGCGGA 1 cut(s) 489
Eco130I CCWWGG 2 cut(s) 334, 388
Eco47III AGCGCT 1 cut(s) 486
Eco88I CYCGRG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 200
EcoT14I CCWWGG 2 cut(s) 334, 388
ErhI CCWWGG 2 cut(s) 334, 388
Esp3I CGTCTC 1 cut(s) 497
FaeI CATG 5 cut(s) 95, 255, 319, 338, 359
FatI CATG 5 cut(s) 91, 251, 315, 334, 355
FauNDI CATATG 1 cut(s) 493
FbaI TGATCA 1 cut(s) 292
FokI GGATG 2 cut(s) 398, 489
FspBI CTAG 1 cut(s) 482
GlaI GCGC 3 cut(s) 260, 308, 486
GsuI CTGGAG 1 cut(s) 408
HaeII RGCGCY 1 cut(s) 488
HapII CCGG 2 cut(s) 188, 604
HhaI GCGC 3 cut(s) 261, 309, 487
Hin1II CATG 5 cut(s) 95, 255, 319, 338, 359
Hin6I GCGC 3 cut(s) 259, 307, 485
HinP1I GCGC 3 cut(s) 259, 307, 485
HinfI GANTC 5 cut(s) 131, 228, 248, 402, 408
HpaII CCGG 2 cut(s) 188, 604
HphI GGTGA 3 cut(s) 27, 153, 177
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 1 cut(s) 407
Hpy188III TCNNGA 3 cut(s) 92, 425, 560
Hpy8I GTNNAC 1 cut(s) 60
HpyAV CCTTC 2 cut(s) 152, 544
HpyCH4V TGCA 2 cut(s) 123, 594
HpyF10VI GCNNNNNNNGC 1 cut(s) 231
Hsp92II CATG 5 cut(s) 95, 255, 319, 338, 359
HspAI GCGC 3 cut(s) 259, 307, 485
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 3 cut(s) 280, 292, 562
LmnI GCTCC 2 cut(s) 206, 338
LpnPI CCDG 9 cut(s) 52, 133, 181, 187, 201, 214, 230, 438, 513
MaeI CTAG 1 cut(s) 482
MaeIII GTNAC 1 cut(s) 437
MalI GATC 3 cut(s) 282, 294, 564
MboI GATC 3 cut(s) 280, 292, 562
MboII GAAGA 2 cut(s) 275, 374
MfeI CAATTG 1 cut(s) 459
MhlI GDGCHC 2 cut(s) 99, 276
MluCI AATT 4 cut(s) 157, 236, 428, 459
MlyI GAGTC 4 cut(s) 140, 237, 257, 417
MnlI CCTC 6 cut(s) 17, 157, 249, 259, 341, 432
MseI TTAA 2 cut(s) 114, 576
MslI CAYNNNNRTG 2 cut(s) 314, 604
MspI CCGG 2 cut(s) 188, 604
MspR9I CCNGG 1 cut(s) 202
MunI CAATTG 1 cut(s) 459
Mva1269I GAATGC 1 cut(s) 102
MvaI CCWGG 1 cut(s) 202
MvnI CGCG 2 cut(s) 108, 261
MwoI GCNNNNNNNGC 1 cut(s) 231
NcoI CCATGG 1 cut(s) 334
NdeI CATATG 1 cut(s) 493
NdeII GATC 3 cut(s) 280, 292, 562
NlaIII CATG 5 cut(s) 95, 255, 319, 338, 359
NlaIV GGNNCC 2 cut(s) 208, 340
NmeAIII GCCGAG 1 cut(s) 235
OliI CACNNNNGTG 1 cut(s) 604
PagI TCATGA 1 cut(s) 91
PasI CCCWGGG 1 cut(s) 201
PctI GAATGC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 402
PflMI CCANNNNNTGG 1 cut(s) 348
PinAI ACCGGT 1 cut(s) 603
PleI GAGTC 4 cut(s) 139, 236, 256, 416
PpsI GAGTC 4 cut(s) 139, 236, 256, 416
Psp6I CCWGG 1 cut(s) 200
PspGI CCWGG 1 cut(s) 200
PspN4I GGNNCC 2 cut(s) 208, 340
PstNI CAGNNNCTG 1 cut(s) 231
RsaI GTAC 2 cut(s) 61, 570
RsaNI GTAC 2 cut(s) 60, 569
RseI CAYNNNNRTG 2 cut(s) 314, 604
SaqAI TTAA 2 cut(s) 114, 576
Sau3AI GATC 3 cut(s) 280, 292, 562
SchI GAGTC 4 cut(s) 140, 237, 257, 417
ScrFI CCNGG 1 cut(s) 202
SduI GDGCHC 2 cut(s) 99, 276
SetI ASST 3 cut(s) 173, 270, 390
SgrAI CRCCGGYG 1 cut(s) 603
SmiMI CAYNNNNRTG 2 cut(s) 314, 604
Sse9I AATT 4 cut(s) 157, 236, 428, 459
SsiI CCGC 2 cut(s) 100, 474
SspMI CTAG 1 cut(s) 482
StyD4I CCNGG 1 cut(s) 200
StyI CCWWGG 2 cut(s) 334, 388
TasI AATT 4 cut(s) 157, 236, 428, 459
TfiI GAWTC 1 cut(s) 402
Tru1I TTAA 2 cut(s) 114, 576
Tru9I TTAA 2 cut(s) 114, 576
TspDTI ATGAA 3 cut(s) 80, 332, 507
Van91I CCANNNNNTGG 1 cut(s) 348
XapI RAATTY 2 cut(s) 236, 428
XspI CTAG 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.