Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000289

Physical Location & Seq

Genomic Coordinates Reverse (-)

28579832 .. 28580292

Gene Structure 461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G284000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTATGCTCATGGTGAAATCGAACCCATTCGGATGCTGCTGCTCGAACGAAGATGTGCTTTTGTAACCTACACAACAAGAGAAGGTGCAGAGAAGGTTGCAGAAGATCTCTTTAATAAACTAGTGATGAAGGCACCTAGACAAGAATTAAAGGGCACAGATAAAGCTAGGCAGCAGGCAGCAGCTCATGGTGGCTTGTTGCCTCAAGCAGTCGTCTCCCAACAGCACAACCAATTTCAACAAGACCAATCTACACCATTTCATTACTACAACATCCCTCCTCAAGCTTCACACGAGACAACATTTTTTCCATCAATGAATCCTCGAGGGGCATGGCGGGAAAAATTCCAGTTCAGAGTGGCAGCAACAGGAGCAGCATTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0065003 GO:0071006 GO:0071007 GO:0071012 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 Torus

Protein Analysis

129

Amino Acids

14.61

Weight (kDa)

9.17

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica	MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica	Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis	pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis	RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata	RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora	Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa	Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha	Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana	Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	324
AccB1I	GGYRCC	1 cut(s)	133
AciI	CCGC	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	344
AgsI	TTSAA	1 cut(s)	239
AhlI	ACTAGT	1 cut(s)	121
AluBI	AGCT	3 cut(s)	167, 185, 287
AluI	AGCT	3 cut(s)	167, 185, 287
Alw26I	GTCTC	2 cut(s)	220, 290
Ama87I	CYCGRG	1 cut(s)	324
ApeKI	GCWGC	7 cut(s)	37, 40, 172, 179, 182, 362, 374
ApoI	RAATTY	1 cut(s)	344
Asp700I	GAANNNNTTC	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	26
AvaI	CYCGRG	1 cut(s)	324
BaeGI	GKGCMC	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	133
BauI	CACGAG	1 cut(s)	293
BbvI	GCAGC	6 cut(s)	24, 27, 184, 191, 194, 374
BccI	CCATC	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	220, 290
BcuI	ACTAGT	1 cut(s)	121
BfaI	CTAG	3 cut(s)	122, 138, 168
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	7 cut(s)	38, 41, 173, 180, 183, 363, 375
BlsI	GCNGC	7 cut(s)	39, 42, 174, 181, 184, 364, 376
BmeT110I	CYCGRG	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	135
BmsI	GCATC	1 cut(s)	24
BpuEI	CTTGAG	2 cut(s)	189, 267
Bse1I	ACTGG	1 cut(s)	349
BseGI	GGATG	2 cut(s)	39, 273
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	1 cut(s)	270
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	6 cut(s)	24, 27, 184, 191, 194, 374
BsgI	GTGCAG	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	324
BsmAI	GTCTC	2 cut(s)	220, 290
BsmBI	CGTCTC	1 cut(s)	220
BsoBI	CYCGRG	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	349
BssMI	GATC	1 cut(s)	106
BssSI	CACGAG	1 cut(s)	293
Bst2BI	CACGAG	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	39, 273
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	2 cut(s)	220, 290
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstSLI	GKGCMC	1 cut(s)	158
BstV1I	GCAGC	6 cut(s)	24, 27, 184, 191, 194, 374
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	39, 273
Cac8I	GCNNGC	1 cut(s)	177
CviAII	CATG	3 cut(s)	11, 188, 333
CviJI	RGCY	4 cut(s)	167, 185, 195, 287
CviKI_1	RGCY	4 cut(s)	167, 185, 195, 287
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eco88I	CYCGRG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	220
FaeI	CATG	3 cut(s)	14, 191, 336
FaiI	YATR	5 cut(s)	6, 12, 189, 334, 382
FalI	AAGNNNNNCTT	2 cut(s)	43, 75
FatI	CATG	3 cut(s)	10, 187, 332
FauI	CCCGC	1 cut(s)	330
Fnu4HI	GCNGC	7 cut(s)	38, 41, 173, 180, 183, 363, 375
FokI	GGATG	2 cut(s)	46, 260
Fsp4HI	GCNGC	7 cut(s)	38, 41, 173, 180, 183, 363, 375
FspBI	CTAG	3 cut(s)	122, 138, 168
GluI	GCNGC	7 cut(s)	38, 41, 173, 180, 183, 363, 375
Hin1II	CATG	3 cut(s)	14, 191, 336
HindIII	AAGCTT	1 cut(s)	285
HinfI	GANTC	1 cut(s)	319
HphI	GGTGA	1 cut(s)	26
Hpy188I	TCNGA	2 cut(s)	33, 356
HpyAV	CCTTC	3 cut(s)	77, 88, 124
HpyCH4V	TGCA	2 cut(s)	89, 101
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
Hsp92II	CATG	3 cut(s)	14, 191, 336
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	1 cut(s)	371
LpnPI	CCDG	3 cut(s)	161, 354, 362
Lsp1109I	GCAGC	6 cut(s)	24, 27, 184, 191, 194, 374
LweI	GCATC	1 cut(s)	24
MaeI	CTAG	3 cut(s)	122, 138, 168
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	2 cut(s)	63, 116
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	3 cut(s)	146, 233, 344
MnlI	CCTC	5 cut(s)	213, 288, 291, 320, 333
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	2 cut(s)	114, 149
MslI	CAYNNNNRTG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	371
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	3 cut(s)	14, 191, 336
NlaIV	GGNNCC	1 cut(s)	135
PaeR7I	CTCGAG	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	319
PkrI	GCNGC	7 cut(s)	39, 42, 174, 181, 184, 364, 376
PspN4I	GGNNCC	1 cut(s)	135
PspXI	VCTCGAGB	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	114, 149
SatI	GCNGC	7 cut(s)	38, 41, 173, 180, 183, 363, 375
Sau3AI	GATC	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	7 cut(s)	71, 88, 99, 139, 169, 187, 289
SfaNI	GCATC	1 cut(s)	24
Sfr274I	CTCGAG	1 cut(s)	324
SlaI	CTCGAG	1 cut(s)	324
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	3 cut(s)	204, 282, 324
SmoI	CTYRAG	3 cut(s)	204, 282, 324
SpeI	ACTAGT	1 cut(s)	121
Sse9I	AATT	3 cut(s)	146, 233, 344
SsiI	CCGC	1 cut(s)	337
SspMI	CTAG	3 cut(s)	122, 138, 168
TaqI	TCGA	3 cut(s)	21, 45, 325
TasI	AATT	3 cut(s)	146, 233, 344
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	2 cut(s)	114, 149
Tru9I	TTAA	2 cut(s)	114, 149
TseI	GCWGC	7 cut(s)	37, 40, 172, 179, 182, 362, 374
TspDTI	ATGAA	3 cut(s)	143, 251, 332
XapI	RAATTY	1 cut(s)	344
XhoI	CTCGAG	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	3 cut(s)	122, 138, 168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.