Rh2CG385800

Condensin II non structural maintenance of chromosomes subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000289
Physical Location & Seq
Forward (+)
52503487 .. 52515833
12347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG385800.1

Sequence Viewer

Length: 813 bp
ATGTGGCCGGAGAAGCAATCTGAAGTGAGGTCTGCTCACAATTTGTTGCTGTCTTGTGATGCGATTGATGGTATGCTGGAAGCACTAACAGCACTTCTGCAGAAATCAGCCTATCGTTGCCATATTAAATATGGCAGTGAAATTAAGAACTTGAGTGTTTTCTCTGCGAAAAGAAGGAAATCAAAGTCCTCTGGCAAAGTTTCAGCTCGACATAAACATGTTAGTGGAAAAAAAGTCACCAGTTTTGGGGAGGATTATTCAGTCGCGGCAGGAATAGCCTGGCAGATCAGGGACTCGCTTGTATTTGTCAATACTCAGAAGGCTATATTGGGATCTCAAACTCTAGAATCCTTACTTATATTAAAGGTCATTTCCGAGTGGCACCCAAATTTGGCTGAACCAGAGAGAGAGCAGATATGTCAATCTTTGACTTGCAAAAATCTCACTTCTGAAGTTGGAATTCAAGCAGCAAAAAACCGTGTTTTGTCATTAAGAACAATTGAAGAGCTTTTCTATCTCAACAACCAGGAACTTAAAGATGAAGTTGAAGAGCATAAGAACCGGATTTCTGATCTTGAGAGTGCGAACATGAAGATGAATGAAGTCATTGAGAATCTAAAGAAAGAGGTGGAGAAGTTGGGCAGTGGGCATTCAAAACGATCAAACAAGTGGACAACGATGTCTAAGAAATTGGGCTTCAGCAAGAAGCCTCTGCAACTGGGGTGTCGTACAAGTCAGGATGCAGTGCACAACCCAAACCCTAGGAGGAAGGACAACGTTAGTTCTACCGGAAAATACGGACTCCTCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Condensin2nSMC

Protein Analysis

270

Amino Acids

30.38

Weight (kDa)

9.5

Isoelectric Point (pI)

51.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 679
AccB1I GGYRCC 1 cut(s) 381
AccII CGCG 1 cut(s) 266
AciI CCGC 1 cut(s) 266
AclI AACGTT 1 cut(s) 777
AclWI GGATC 1 cut(s) 340
AcoI YGGCCR 1 cut(s) 5
AcsI RAATTY 2 cut(s) 388, 459
AcuI CTGAAG 3 cut(s) 42, 471, 682
AfaI GTAC 1 cut(s) 730
AfiI CCNNNNNNNGG 2 cut(s) 246, 391
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 4 cut(s) 464, 503, 548, 654
AjnI CCWGG 2 cut(s) 278, 525
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AluBI AGCT 2 cut(s) 206, 508
AluI AGCT 2 cut(s) 206, 508
Alw21I GWGCWC 1 cut(s) 750
Alw44I GTGCAC 1 cut(s) 746
AlwI GGATC 1 cut(s) 340
AoxI GGCC 1 cut(s) 5
ApaLI GTGCAC 1 cut(s) 746
ApeKI GCWGC 1 cut(s) 467
ApoI RAATTY 2 cut(s) 388, 459
AspA2I CCTAGG 1 cut(s) 761
AsuHPI GGTGA 1 cut(s) 229
AvrII CCTAGG 1 cut(s) 761
BaeGI GKGCMC 1 cut(s) 750
BanI GGYRCC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 750
BbvI GCAGC 1 cut(s) 479
BccI CCATC 1 cut(s) 62
BciT130I CCWGG 2 cut(s) 280, 527
BfaI CTAG 2 cut(s) 344, 762
BfmI CTRYAG 1 cut(s) 98
BisI GCNGC 2 cut(s) 267, 468
BlnI CCTAGG 1 cut(s) 761
BlsI GCNGC 2 cut(s) 268, 469
Bme1390I CCNGG 2 cut(s) 280, 527
BmiI GGNNCC 1 cut(s) 383
BmrFI CCNGG 2 cut(s) 280, 527
BmrI ACTGGG 1 cut(s) 728
BmsI GCATC 2 cut(s) 49, 730
BmuI ACTGGG 1 cut(s) 728
BplI GAGNNNNNCTC 2 cut(s) 19, 51
BpuEI CTTGAG 2 cut(s) 172, 596
BsaJI CCNNGG 1 cut(s) 761
BsaWI WCCGGW 2 cut(s) 561, 788
Bsc4I CCNNNNNNNGG 2 cut(s) 246, 391
Bse1I ACTGG 2 cut(s) 240, 723
BseBI CCWGG 2 cut(s) 280, 527
BseDI CCNNGG 1 cut(s) 761
BseGI GGATG 1 cut(s) 745
BseLI CCNNNNNNNGG 2 cut(s) 246, 391
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 2 cut(s) 240, 723
BseRI GAGGAG 2 cut(s) 794, 797
BseSI GKGCMC 1 cut(s) 750
BseXI GCAGC 1 cut(s) 479
Bsh1236I CGCG 1 cut(s) 266
BshFI GGCC 1 cut(s) 7
BshNI GGYRCC 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 750
BsiSI CCGG 3 cut(s) 8, 562, 789
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 2 cut(s) 246, 391
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 649
BsnI GGCC 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 750
Bsp143I GATC 4 cut(s) 285, 332, 571, 659
BspACI CCGC 1 cut(s) 266
BspANI GGCC 1 cut(s) 7
BspCNI CTCAG 1 cut(s) 328
BspFNI CGCG 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 383
BspMAI CTGCAG 1 cut(s) 102
BspPI GGATC 1 cut(s) 340
BspQI GCTCTTC 2 cut(s) 498, 543
BspT107I GGYRCC 1 cut(s) 381
BsrI ACTGG 2 cut(s) 240, 723
BssECI CCNNGG 1 cut(s) 761
BssMI GATC 4 cut(s) 285, 332, 571, 659
BssT1I CCWWGG 1 cut(s) 761
Bst2UI CCWGG 2 cut(s) 280, 527
Bst4CI ACNGT 1 cut(s) 479
Bst6I CTCTTC 2 cut(s) 498, 543
BstDEI CTNAG 2 cut(s) 315, 684
BstF5I GGATG 1 cut(s) 745
BstFNI CGCG 1 cut(s) 266
BstKTI GATC 4 cut(s) 288, 335, 574, 662
BstMBI GATC 4 cut(s) 285, 332, 571, 659
BstMWI GCNNNNNNNGC 3 cut(s) 13, 89, 275
BstNI CCWGG 2 cut(s) 280, 527
BstNSI RCATGY 1 cut(s) 221
BstSCI CCNGG 2 cut(s) 278, 525
BstSFI CTRYAG 1 cut(s) 98
BstSLI GKGCMC 1 cut(s) 750
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 1 cut(s) 479
BstX2I RGATCY 1 cut(s) 332
BstYI RGATCY 1 cut(s) 332
BsuRI GGCC 1 cut(s) 7
BtsCI GGATG 1 cut(s) 745
BtsI GCAGTG 3 cut(s) 142, 649, 750
BtsIMutI CAGTG 3 cut(s) 142, 649, 750
Csp6I GTAC 1 cut(s) 729
CviAII CATG 2 cut(s) 218, 589
CviJI RGCY 9 cut(s) 7, 110, 206, 278, 323, 395, 508, 696, 709
CviKI_1 RGCY 9 cut(s) 7, 110, 206, 278, 323, 395, 508, 696, 709
CviQI GTAC 1 cut(s) 729
DdeI CTNAG 2 cut(s) 315, 684
DpnI GATC 4 cut(s) 287, 334, 573, 661
DpnII GATC 4 cut(s) 285, 332, 571, 659
DrdI GACNNNNNNGTC 1 cut(s) 679
DseDI GACNNNNNNGTC 1 cut(s) 679
EaeI YGGCCR 1 cut(s) 5
Eam1104I CTCTTC 2 cut(s) 498, 543
EarI CTCTTC 2 cut(s) 498, 543
Eco130I CCWWGG 1 cut(s) 761
Eco57I CTGAAG 3 cut(s) 42, 471, 682
EcoRI GAATTC 1 cut(s) 459
EcoRII CCWGG 2 cut(s) 278, 525
EcoT14I CCWWGG 1 cut(s) 761
ErhI CCWWGG 1 cut(s) 761
FaeI CATG 2 cut(s) 221, 592
FaqI GGGAC 1 cut(s) 305
FatI CATG 2 cut(s) 217, 588
Fnu4HI GCNGC 2 cut(s) 267, 468
FokI GGATG 1 cut(s) 752
Fsp4HI GCNGC 2 cut(s) 267, 468
FspBI CTAG 2 cut(s) 344, 762
GluI GCNGC 2 cut(s) 267, 468
HaeIII GGCC 1 cut(s) 7
HapII CCGG 3 cut(s) 8, 562, 789
Hin1II CATG 2 cut(s) 221, 592
HinfI GANTC 4 cut(s) 293, 347, 613, 801
HpaII CCGG 3 cut(s) 8, 562, 789
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 2 cut(s) 672, 748
Hpy188I TCNGA 6 cut(s) 22, 318, 376, 451, 571, 812
Hpy188III TCNNGA 3 cut(s) 344, 575, 737
Hpy8I GTNNAC 2 cut(s) 672, 748
HpyAV CCTTC 3 cut(s) 168, 313, 763
HpyCH4III ACNGT 1 cut(s) 479
HpyCH4IV ACGT 1 cut(s) 777
HpyCH4V TGCA 5 cut(s) 100, 435, 715, 743, 748
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 89, 275
HpyF3I CTNAG 2 cut(s) 315, 684
HpySE526I ACGT 1 cut(s) 777
Hsp92II CATG 2 cut(s) 221, 592
Kzo9I GATC 4 cut(s) 285, 332, 571, 659
LguI GCTCTTC 2 cut(s) 498, 543
Lsp1109I GCAGC 1 cut(s) 479
LweI GCATC 2 cut(s) 49, 730
MaeI CTAG 2 cut(s) 344, 762
MaeII ACGT 1 cut(s) 777
MaeIII GTNAC 1 cut(s) 235
MalI GATC 4 cut(s) 287, 334, 573, 661
MboI GATC 4 cut(s) 285, 332, 571, 659
MboII GAAGA 3 cut(s) 515, 560, 604
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 1 cut(s) 332
MhlI GDGCHC 1 cut(s) 750
MluCI AATT 6 cut(s) 40, 141, 388, 459, 498, 689
MlyI GAGTC 2 cut(s) 287, 795
MmeI TCCRAC 1 cut(s) 436
MnlI CCTC 6 cut(s) 21, 199, 244, 619, 720, 759
MseI TTAA 5 cut(s) 126, 144, 362, 491, 534
MslI CAYNNNNRTG 3 cut(s) 216, 222, 593
MspI CCGG 3 cut(s) 8, 562, 789
MspR9I CCNGG 2 cut(s) 280, 527
MunI CAATTG 1 cut(s) 498
Mva1269I GAATGC 1 cut(s) 649
MvaI CCWGG 2 cut(s) 280, 527
MvnI CGCG 1 cut(s) 266
MwoI GCNNNNNNNGC 3 cut(s) 13, 89, 275
NdeII GATC 4 cut(s) 285, 332, 571, 659
NlaIII CATG 2 cut(s) 221, 592
NlaIV GGNNCC 1 cut(s) 383
NmuCI GTSAC 1 cut(s) 235
NspI RCATGY 1 cut(s) 221
PciI ACATGT 1 cut(s) 217
PciSI GCTCTTC 2 cut(s) 498, 543
PctI GAATGC 1 cut(s) 649
PfeI GAWTC 2 cut(s) 347, 613
PkrI GCNGC 2 cut(s) 268, 469
PleI GAGTC 2 cut(s) 287, 795
PpsI GAGTC 2 cut(s) 287, 795
PscI ACATGT 1 cut(s) 217
Psp1406I AACGTT 1 cut(s) 777
Psp6I CCWGG 2 cut(s) 278, 525
PspGI CCWGG 2 cut(s) 278, 525
PspN4I GGNNCC 1 cut(s) 383
PstI CTGCAG 1 cut(s) 102
PsuI RGATCY 1 cut(s) 332
RsaI GTAC 1 cut(s) 730
RsaNI GTAC 1 cut(s) 729
RseI CAYNNNNRTG 3 cut(s) 216, 222, 593
SapI GCTCTTC 2 cut(s) 498, 543
SaqAI TTAA 5 cut(s) 126, 144, 362, 491, 534
SatI GCNGC 2 cut(s) 267, 468
Sau3AI GATC 4 cut(s) 285, 332, 571, 659
SchI GAGTC 2 cut(s) 287, 795
ScrFI CCNGG 2 cut(s) 280, 527
SduI GDGCHC 1 cut(s) 750
SetI ASST 6 cut(s) 32, 208, 369, 510, 630, 780
SfaNI GCATC 2 cut(s) 49, 730
SfcI CTRYAG 1 cut(s) 98
SmiMI CAYNNNNRTG 3 cut(s) 216, 222, 593
SmlI CTYRAG 2 cut(s) 151, 575
SmoI CTYRAG 2 cut(s) 151, 575
Sse9I AATT 6 cut(s) 40, 141, 388, 459, 498, 689
SsiI CCGC 1 cut(s) 266
SspMI CTAG 2 cut(s) 344, 762
StyD4I CCNGG 2 cut(s) 278, 525
StyI CCWWGG 1 cut(s) 761
TaaI ACNGT 1 cut(s) 479
TaiI ACGT 1 cut(s) 780
TaqI TCGA 1 cut(s) 208
TasI AATT 6 cut(s) 40, 141, 388, 459, 498, 689
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 2 cut(s) 347, 613
Tru1I TTAA 5 cut(s) 126, 144, 362, 491, 534
Tru9I TTAA 5 cut(s) 126, 144, 362, 491, 534
TscAI CASTG 3 cut(s) 142, 649, 750
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 1 cut(s) 467
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 4 cut(s) 555, 605, 611, 615
TspGWI ACGGA 1 cut(s) 813
TspRI CASTG 3 cut(s) 142, 649, 750
VneI GTGCAC 1 cut(s) 746
XapI RAATTY 2 cut(s) 388, 459
XbaI TCTAGA 1 cut(s) 343
XceI RCATGY 1 cut(s) 221
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XmaJI CCTAGG 1 cut(s) 761
XspI CTAG 2 cut(s) 344, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.