FvH4_1g24070

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000289
Physical Location & Seq
Reverse (-)
15922842 .. 15924294
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24070.t1

Sequence Viewer

Length: 1137 bp
ATGTTCTTGGAGAATCCATCATCTGAACACCTTGTATTGCCTGAGTTTCCTGGTGGAGCTGAAACATTTGAGTTGGTTGTTGAGCTGTGTTATTGCATCAGACGTCCTCTCAATGTTTCCACAATTGTTCCTTTCCTAGCTGCGGCTAATTATTTAGAGTTGGTGTCTGAGGATGCTCTTACTCAACAAGCAACATACTTCCTTGAACAAGAAGAATTTTACAAGAATTGGGAAACATGTGCTGCTGTGTTGCTATCTTGCCAGCATCCCAAGGTTCTGGAGTACGCCAAGACATGCGAAATTCTACCAACATGTGTGCGCACCATTAAGTCCACCTCTAAACGCTATTTTCGGAAGAGGCAAGTATTTGAAGCAAGTTCTTCATCACAAGTTGAAGTAGACGATGTAGACAATGAGGAGAAGAAAAGATTCCTGGAACAACTTGCTGTTTTGCTTCCGAAGAATGCGTGGAGTGGCTTGAGTCTTGGATTTATTCTTATTCCCGATCTTCACGAAGTTGCTCCAGAAGCTGTGTATACTCTAGACATCACCACCTTCCAGCACATTGTCAGCTTCTACCTCCATAAGCATGAGGATGTTAGCACAATAGCTAATCTTGTTGATGATTACCTGAACAAGAATGCTGCTAATGATGTGGTGTCGGTGGCTCAATTTCAAGGATTAGCAGACTCAGTCCGGCATGCTAGATCCGTGGACGACAATCTCTATTTTGCTATTGATATGTATCTACAGACACATCCATCCTTGGCTGAATGGGAGAAAGAGAAGATATGTCAATCTTTGAATTGCCAAAATCTTACTTCTGAAGTTCAGAACCATGCAACCAAACGTCGTGTCTTGTCTTTAAGAGCAATTGTTGAGCTTTACTCTCTCAACAATCAGGAGCTCAAACATGAAGTTCAAGAGAATAAGAGGAGGATTTCTGCTCTTGAGAACACAGTTGACAATCTAAGTAAAGAGGTGGAGAAGTTGGGCAGTGGGAAGTCAAAAGGATGGACAAGCCTATCTAAGAAACTTGGCTTCAACAAGAACCTGCAGGTGTGTACTACAAGTCAGGATGCGGTGCATAACCCAAATCCTATGAGGAGGGACAATCTGGACTCCTCTGAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

379

Amino Acids

43.01

Weight (kDa)

5.39

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 166 - 276 4.2e-23 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1048
AatII GACGTC 1 cut(s) 106
Acc16I TGCGCA 1 cut(s) 320
Acc36I ACCTGC 2 cut(s) 1048, 1062
AccI GTMKAC 3 cut(s) 399, 408, 536
AciI CCGC 2 cut(s) 143, 1082
AclWI GGATC 1 cut(s) 702
AcsI RAATTY 2 cut(s) 215, 300
AcuI CTGAAG 1 cut(s) 846
AcyI GRCGYC 1 cut(s) 103
AfaI GTAC 2 cut(s) 284, 1066
AfiI CCNNNNNNNGG 1 cut(s) 142
AflIII ACRYGT 2 cut(s) 236, 311
AgsI TTSAA 7 cut(s) 206, 371, 395, 677, 805, 923, 1045
AjnI CCWGG 2 cut(s) 49, 432
AluBI AGCT 8 cut(s) 59, 85, 140, 530, 573, 611, 883, 907
AluI AGCT 8 cut(s) 59, 85, 140, 530, 573, 611, 883, 907
Alw21I GWGCWC 1 cut(s) 909
AlwI GGATC 1 cut(s) 702
AlwNI CAGNNNCTG 1 cut(s) 530
ApeKI GCWGC 3 cut(s) 140, 242, 644
ApoI RAATTY 2 cut(s) 215, 300
ArsI GACNNNNNNTTYG 2 cut(s) 840, 872
Asp700I GAANNNNTTC 1 cut(s) 428
AspLEI GCGC 1 cut(s) 321
AsuHPI GGTGA 1 cut(s) 541
BanII GRGCYC 1 cut(s) 909
Bbv12I GWGCWC 1 cut(s) 909
BbvI GCAGC 3 cut(s) 127, 229, 631
BccI CCATC 3 cut(s) 25, 769, 1008
BciT130I CCWGG 2 cut(s) 51, 434
BfaI CTAG 3 cut(s) 137, 542, 705
BfmI CTRYAG 2 cut(s) 749, 1055
BfuAI ACCTGC 2 cut(s) 1048, 1062
BisI GCNGC 4 cut(s) 141, 144, 243, 645
BlsI GCNGC 4 cut(s) 142, 145, 244, 646
Bme1390I CCNGG 2 cut(s) 51, 434
BmrFI CCNGG 2 cut(s) 51, 434
BmsI GCATC 4 cut(s) 105, 163, 274, 1069
BplI GAGNNNNNCTC 2 cut(s) 872, 904
BpmI CTGGAG 2 cut(s) 299, 507
BpuEI CTTGAG 2 cut(s) 499, 971
BsaBI GATNNNNATC 1 cut(s) 744
BsaHI GRCGYC 1 cut(s) 103
BsaJI CCNNGG 3 cut(s) 270, 711, 765
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse8I GATNNNNATC 1 cut(s) 744
BseBI CCWGG 2 cut(s) 51, 434
BseDI CCNNGG 3 cut(s) 270, 711, 765
BseGI GGATG 7 cut(s) 178, 265, 601, 757, 761, 1019, 1084
BseJI GATNNNNATC 1 cut(s) 744
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMII CTCAG 4 cut(s) 33, 159, 705, 1119
BseRI GAGGAG 4 cut(s) 431, 949, 1114, 1120
BseXI GCAGC 3 cut(s) 127, 229, 631
BsiHKAI GWGCWC 1 cut(s) 909
BsiSI CCGG 1 cut(s) 697
BslFI GGGAC 1 cut(s) 1124
BslI CCNNNNNNNGG 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 1124
BsmI GAATGC 2 cut(s) 469, 646
Bsp1286I GDGCHC 1 cut(s) 909
Bsp143I GATC 2 cut(s) 505, 707
BspACI CCGC 2 cut(s) 143, 1082
BspCNI CTCAG 4 cut(s) 34, 160, 704, 1120
BspMAI CTGCAG 1 cut(s) 1059
BspMI ACCTGC 2 cut(s) 1048, 1062
BspPI GGATC 1 cut(s) 702
BssECI CCNNGG 3 cut(s) 270, 711, 765
BssMI GATC 2 cut(s) 505, 707
BssNAI GTATAC 1 cut(s) 537
BssNI GRCGYC 1 cut(s) 103
BssT1I CCWWGG 2 cut(s) 270, 765
Bst1107I GTATAC 1 cut(s) 537
Bst2UI CCWGG 2 cut(s) 51, 434
Bst4CI ACNGT 1 cut(s) 961
Bst6I CTCTTC 1 cut(s) 350
BstACI GRCGYC 1 cut(s) 103
BstC8I GCNNGC 2 cut(s) 263, 702
BstDEI CTNAG 6 cut(s) 42, 168, 691, 971, 1029, 1128
BstDSI CCRYGG 1 cut(s) 711
BstF5I GGATG 7 cut(s) 178, 265, 601, 757, 761, 1019, 1084
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 2 cut(s) 508, 710
BstMBI GATC 2 cut(s) 505, 707
BstMWI GCNNNNNNNGC 1 cut(s) 527
BstNI CCWGG 2 cut(s) 51, 434
BstNSI RCATGY 4 cut(s) 240, 297, 315, 704
BstSCI CCNGG 2 cut(s) 49, 432
BstSFI CTRYAG 2 cut(s) 749, 1055
BstV1I GCAGC 3 cut(s) 127, 229, 631
BstX2I RGATCY 1 cut(s) 707
BstXI CCANNNNNNTGG 1 cut(s) 277
BstYI RGATCY 1 cut(s) 707
BstZ17I GTATAC 1 cut(s) 537
BtgI CCRYGG 1 cut(s) 711
BtsCI GGATG 7 cut(s) 178, 265, 601, 757, 761, 1019, 1084
BtsI GCAGTG 1 cut(s) 1003
BtsIMutI CAGTG 1 cut(s) 1003
BveI ACCTGC 2 cut(s) 1048, 1062
Cac8I GCNNGC 2 cut(s) 263, 702
CaiI CAGNNNCTG 1 cut(s) 530
CfoI GCGC 1 cut(s) 321
Csp6I GTAC 2 cut(s) 283, 1065
CviAII CATG 7 cut(s) 237, 294, 312, 590, 701, 839, 914
CviQI GTAC 2 cut(s) 283, 1065
DdeI CTNAG 6 cut(s) 42, 168, 691, 971, 1029, 1128
DpnI GATC 2 cut(s) 507, 709
DpnII GATC 2 cut(s) 505, 707
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Ecl136II GAGCTC 1 cut(s) 907
Eco130I CCWWGG 2 cut(s) 270, 765
Eco24I GRGCYC 1 cut(s) 909
Eco53kI GAGCTC 1 cut(s) 907
Eco57I CTGAAG 1 cut(s) 846
EcoICRI GAGCTC 1 cut(s) 907
EcoRII CCWGG 2 cut(s) 49, 432
EcoT14I CCWWGG 2 cut(s) 270, 765
EcoT38I GRGCYC 1 cut(s) 909
ErhI CCWWGG 2 cut(s) 270, 765
FaeI CATG 7 cut(s) 240, 297, 315, 593, 704, 842, 917
FaqI GGGAC 1 cut(s) 1124
FatI CATG 7 cut(s) 236, 293, 311, 589, 700, 838, 913
FblI GTMKAC 3 cut(s) 399, 408, 536
Fnu4HI GCNGC 4 cut(s) 141, 144, 243, 645
FokI GGATG 7 cut(s) 185, 252, 608, 744, 748, 1026, 1091
FriOI GRGCYC 1 cut(s) 909
Fsp4HI GCNGC 4 cut(s) 141, 144, 243, 645
FspAI RTGCGCAY 1 cut(s) 320
FspBI CTAG 3 cut(s) 137, 542, 705
FspI TGCGCA 1 cut(s) 320
GlaI GCGC 1 cut(s) 320
GluI GCNGC 4 cut(s) 141, 144, 243, 645
GsuI CTGGAG 2 cut(s) 299, 507
HapII CCGG 1 cut(s) 697
HhaI GCGC 1 cut(s) 321
Hin1I GRCGYC 1 cut(s) 103
Hin1II CATG 7 cut(s) 240, 297, 315, 593, 704, 842, 917
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HincII GTYRAC 1 cut(s) 964
HindII GTYRAC 1 cut(s) 964
HinfI GANTC 5 cut(s) 13, 429, 481, 689, 1121
HpaII CCGG 1 cut(s) 697
HphI GGTGA 1 cut(s) 541
Hpy166II GTNNAC 7 cut(s) 333, 400, 409, 537, 715, 964, 1065
Hpy188I TCNGA 8 cut(s) 25, 101, 169, 354, 459, 826, 834, 1129
Hpy8I GTNNAC 7 cut(s) 333, 400, 409, 537, 715, 964, 1065
Hpy99I CGWCG 1 cut(s) 855
HpyAV CCTTC 1 cut(s) 565
HpyCH4III ACNGT 1 cut(s) 961
HpyCH4IV ACGT 2 cut(s) 103, 850
HpyCH4V TGCA 4 cut(s) 96, 842, 1057, 1087
HpyF10VI GCNNNNNNNGC 1 cut(s) 527
HpyF3I CTNAG 6 cut(s) 42, 168, 691, 971, 1029, 1128
HpySE526I ACGT 2 cut(s) 103, 850
Hsp92I GRCGYC 1 cut(s) 103
Hsp92II CATG 7 cut(s) 240, 297, 315, 593, 704, 842, 917
HspAI GCGC 1 cut(s) 319
Kzo9I GATC 2 cut(s) 505, 707
LmnI GCTCC 3 cut(s) 56, 526, 904
Lsp1109I GCAGC 3 cut(s) 127, 229, 631
LweI GCATC 4 cut(s) 105, 163, 274, 1069
MaeI CTAG 3 cut(s) 137, 542, 705
MaeII ACGT 2 cut(s) 103, 850
MalI GATC 2 cut(s) 507, 709
MboI GATC 2 cut(s) 505, 707
MboII GAAGA 7 cut(s) 224, 367, 372, 433, 472, 500, 799
MfeI CAATTG 2 cut(s) 123, 873
MflI RGATCY 1 cut(s) 707
MhlI GDGCHC 1 cut(s) 909
MluCI AATT 8 cut(s) 123, 148, 215, 226, 300, 671, 805, 873
MlyI GAGTC 3 cut(s) 490, 683, 1115
MroXI GAANNNNTTC 1 cut(s) 428
MseI TTAA 2 cut(s) 327, 866
MslI CAYNNNNRTG 2 cut(s) 588, 594
MspI CCGG 1 cut(s) 697
MspR9I CCNGG 2 cut(s) 51, 434
MunI CAATTG 2 cut(s) 123, 873
Mva1269I GAATGC 2 cut(s) 469, 646
MvaI CCWGG 2 cut(s) 51, 434
MwoI GCNNNNNNNGC 1 cut(s) 527
NdeII GATC 2 cut(s) 505, 707
NlaIII CATG 7 cut(s) 240, 297, 315, 593, 704, 842, 917
NsbI TGCGCA 1 cut(s) 320
NspI RCATGY 4 cut(s) 240, 297, 315, 704
PaeI GCATGC 1 cut(s) 704
PaqCI CACCTGC 1 cut(s) 1048
PciI ACATGT 2 cut(s) 236, 311
PctI GAATGC 2 cut(s) 469, 646
PdmI GAANNNNTTC 1 cut(s) 428
PfeI GAWTC 2 cut(s) 13, 429
PflFI GACNNNGTC 1 cut(s) 692
PfoI TCCNGGA 1 cut(s) 432
PkrI GCNGC 4 cut(s) 142, 145, 244, 646
PleI GAGTC 3 cut(s) 489, 683, 1115
PpsI GAGTC 3 cut(s) 489, 683, 1115
PscI ACATGT 2 cut(s) 236, 311
Psp124BI GAGCTC 1 cut(s) 909
Psp6I CCWGG 2 cut(s) 49, 432
PspGI CCWGG 2 cut(s) 49, 432
PstI CTGCAG 1 cut(s) 1059
PstNI CAGNNNCTG 1 cut(s) 530
PsuI RGATCY 1 cut(s) 707
PsyI GACNNNGTC 1 cut(s) 692
RsaI GTAC 2 cut(s) 284, 1066
RsaNI GTAC 2 cut(s) 283, 1065
RseI CAYNNNNRTG 2 cut(s) 588, 594
SacI GAGCTC 1 cut(s) 909
SaqAI TTAA 2 cut(s) 327, 866
SatI GCNGC 4 cut(s) 141, 144, 243, 645
Sau3AI GATC 2 cut(s) 505, 707
SbfI CCTGCAGG 1 cut(s) 1059
SchI GAGTC 3 cut(s) 490, 683, 1115
ScrFI CCNGG 2 cut(s) 51, 434
SdaI CCTGCAGG 1 cut(s) 1059
SduI GDGCHC 1 cut(s) 909
SfaNI GCATC 4 cut(s) 105, 163, 274, 1069
SfcI CTRYAG 2 cut(s) 749, 1055
SmiMI CAYNNNNRTG 2 cut(s) 588, 594
SmlI CTYRAG 2 cut(s) 478, 950
SmoI CTYRAG 2 cut(s) 478, 950
SphI GCATGC 1 cut(s) 704
Sse8387I CCTGCAGG 1 cut(s) 1059
Sse9I AATT 8 cut(s) 123, 148, 215, 226, 300, 671, 805, 873
SsiI CCGC 2 cut(s) 143, 1082
SspMI CTAG 3 cut(s) 137, 542, 705
SstI GAGCTC 1 cut(s) 909
StyD4I CCNGG 2 cut(s) 49, 432
StyI CCWWGG 2 cut(s) 270, 765
TaaI ACNGT 1 cut(s) 961
TaiI ACGT 2 cut(s) 106, 853
TasI AATT 8 cut(s) 123, 148, 215, 226, 300, 671, 805, 873
TatI WGTACW 1 cut(s) 1064
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 2 cut(s) 13, 429
Tru1I TTAA 2 cut(s) 327, 866
Tru9I TTAA 2 cut(s) 327, 866
TscAI CASTG 1 cut(s) 1003
TseI GCWGC 3 cut(s) 140, 242, 644
TspDTI ATGAA 2 cut(s) 372, 930
TspGWI ACGGA 1 cut(s) 700
TspRI CASTG 1 cut(s) 1003
Tth111I GACNNNGTC 1 cut(s) 692
XapI RAATTY 2 cut(s) 215, 300
XbaI TCTAGA 1 cut(s) 541
XceI RCATGY 4 cut(s) 240, 297, 315, 704
XmiI GTMKAC 3 cut(s) 399, 408, 536
XmnI GAANNNNTTC 1 cut(s) 428
XspI CTAG 3 cut(s) 137, 542, 705
ZraI GACGTC 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.