RLG00000005933

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000289
Physical Location & Seq
Reverse (-)
2891774 .. 2892458
685 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005933

Sequence Viewer

Length: 591 bp
ATGTACGCTCACCTCCTGTTACATTTCTACGACGAAACCGCATTGCATGAGCGCTTGCTCTCCCTCCAAATCAACCAAGATGGAAGTAGTCCATCACTCCTCACACATTGTCTAACACTGCCCTACGGATATCGTGTTTACCATGCCCACTCTAGCAACGGCCTGGTACTTCTTAACCTTGGTAATGCCTTGATTCATGACCACCCCATTCTTATATCTAATCCCTGCACCAGAGAGTTTATTACTCTTCACCTTCCCAATTTTCCTACACACATAAGCTACTCCTGGTTCAAGATTGTACACCGCTTCGGGTTCAGTCCTGTCACTAATGATTACAAGGTTCTCCAAGTCCAATATCGCCAGTCTTTAGAAGAATCTGATCGAACCATTCATGGCTTTACTTTCAAGATTTTCACACTGGGCACAAATATATACATGGAGGAACATACAGATAGGCTTGATATCATAGTGGTTTTTGACCTCGGAGAGGAGAGAATGAGAGCCATCCCTCTTCCGGATGATGATATCCGGGGAGCAGAACTCTTTGAATTGGATGGATGTCTAGCTCTAATAGATCCCGAATCGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

197

Amino Acids

22.63

Weight (kDa)

5.41

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 18 - 143 2.1e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 514
AciI CCGC 2 cut(s) 39, 304
AclWI GGATC 1 cut(s) 569
AfaI GTAC 3 cut(s) 5, 168, 300
AfeI AGCGCT 1 cut(s) 53
AfiI CCNNNNNNNGG 2 cut(s) 487, 514
AgsI TTSAA 3 cut(s) 292, 406, 548
AjnI CCWGG 2 cut(s) 162, 284
AluBI AGCT 2 cut(s) 279, 566
AluI AGCT 2 cut(s) 279, 566
AlwI GGATC 1 cut(s) 569
Aor13HI TCCGGA 1 cut(s) 514
Aor51HI AGCGCT 1 cut(s) 53
AoxI GGCC 1 cut(s) 160
AspLEI GCGC 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 530
AsuHPI GGTGA 1 cut(s) 242
BaeGI GKGCMC 1 cut(s) 425
BccI CCATC 4 cut(s) 74, 100, 512, 548
BceAI ACGGC 1 cut(s) 175
BciT130I CCWGG 2 cut(s) 164, 286
BcnI CCSGG 1 cut(s) 530
BfaI CTAG 2 cut(s) 153, 563
BfoI RGCGCY 1 cut(s) 55
Bme1390I CCNGG 3 cut(s) 164, 286, 530
BmrFI CCNGG 3 cut(s) 164, 286, 530
BmrI ACTGGG 1 cut(s) 428
BmuI ACTGGG 1 cut(s) 428
BplI GAGNNNNNCTC 2 cut(s) 525, 557
BpuMI CCSGG 1 cut(s) 530
BsaJI CCNNGG 3 cut(s) 178, 481, 529
BsaWI WCCGGW 1 cut(s) 514
Bsc4I CCNNNNNNNGG 2 cut(s) 487, 514
Bse1I ACTGG 2 cut(s) 361, 423
Bse3DI GCAATG 1 cut(s) 41
BseAI TCCGGA 1 cut(s) 514
BseBI CCWGG 2 cut(s) 164, 286
BseDI CCNNGG 3 cut(s) 178, 481, 529
BseGI GGATG 4 cut(s) 504, 523, 559, 563
BseLI CCNNNNNNNGG 2 cut(s) 487, 514
BseMI GCAATG 1 cut(s) 41
BseNI ACTGG 2 cut(s) 361, 423
BseRI GAGGAG 2 cut(s) 89, 503
BseSI GKGCMC 1 cut(s) 425
BsgI GTGCAG 1 cut(s) 211
BshFI GGCC 1 cut(s) 162
BsiSI CCGG 2 cut(s) 515, 529
BslI CCNNNNNNNGG 2 cut(s) 487, 514
BsnI GGCC 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 425
Bsp13I TCCGGA 1 cut(s) 514
Bsp1407I TGTACA 1 cut(s) 298
Bsp143I GATC 2 cut(s) 379, 574
BspACI CCGC 2 cut(s) 39, 304
BspANI GGCC 1 cut(s) 162
BspEI TCCGGA 1 cut(s) 514
BspHI TCATGA 1 cut(s) 196
BspPI GGATC 1 cut(s) 569
BsrDI GCAATG 1 cut(s) 41
BsrGI TGTACA 1 cut(s) 298
BsrI ACTGG 2 cut(s) 361, 423
BssECI CCNNGG 3 cut(s) 178, 481, 529
BssMI GATC 2 cut(s) 379, 574
BssT1I CCWWGG 1 cut(s) 178
Bst2UI CCWGG 2 cut(s) 164, 286
Bst6I CTCTTC 2 cut(s) 252, 516
BstAUI TGTACA 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 56
BstENI CCTNNNNNAGG 1 cut(s) 485
BstF5I GGATG 4 cut(s) 504, 523, 559, 563
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 2 cut(s) 382, 577
BstMBI GATC 2 cut(s) 379, 574
BstNI CCWGG 2 cut(s) 164, 286
BstSCI CCNGG 3 cut(s) 162, 284, 528
BstSLI GKGCMC 1 cut(s) 425
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
BsuRI GGCC 1 cut(s) 162
BtsCI GGATG 4 cut(s) 504, 523, 559, 563
BtsI GCAGTG 1 cut(s) 116
BtsIMutI CAGTG 2 cut(s) 116, 416
Cac8I GCNNGC 1 cut(s) 56
CciI TCATGA 1 cut(s) 196
CfoI GCGC 1 cut(s) 54
Csp6I GTAC 3 cut(s) 4, 167, 299
CviAII CATG 5 cut(s) 47, 143, 197, 392, 436
CviJI RGCY 6 cut(s) 162, 279, 396, 457, 503, 566
CviKI_1 RGCY 6 cut(s) 162, 279, 396, 457, 503, 566
CviQI GTAC 3 cut(s) 4, 167, 299
DpnI GATC 2 cut(s) 381, 576
DpnII GATC 2 cut(s) 379, 574
Eam1104I CTCTTC 2 cut(s) 252, 516
EarI CTCTTC 2 cut(s) 252, 516
Eco130I CCWWGG 1 cut(s) 178
Eco32I GATATC 3 cut(s) 131, 463, 526
Eco47III AGCGCT 1 cut(s) 53
EcoNI CCTNNNNNAGG 1 cut(s) 485
EcoRII CCWGG 2 cut(s) 162, 284
EcoRV GATATC 3 cut(s) 131, 463, 526
EcoT14I CCWWGG 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 5 cut(s) 50, 146, 200, 395, 439
FatI CATG 5 cut(s) 46, 142, 196, 391, 435
FokI GGATG 4 cut(s) 491, 530, 566, 570
FspBI CTAG 2 cut(s) 153, 563
GlaI GCGC 1 cut(s) 53
HaeII RGCGCY 1 cut(s) 55
HaeIII GGCC 1 cut(s) 162
HapII CCGG 2 cut(s) 515, 529
HhaI GCGC 1 cut(s) 54
Hin1II CATG 5 cut(s) 50, 146, 200, 395, 439
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 3 cut(s) 193, 374, 581
HpaII CCGG 2 cut(s) 515, 529
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 2 cut(s) 139, 301
Hpy188I TCNGA 2 cut(s) 379, 485
Hpy188III TCNNGA 5 cut(s) 197, 292, 406, 515, 578
Hpy8I GTNNAC 2 cut(s) 139, 301
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 263
HpyCH4V TGCA 2 cut(s) 46, 228
Hsp92II CATG 5 cut(s) 50, 146, 200, 395, 439
HspAI GCGC 1 cut(s) 52
Kpn2I TCCGGA 1 cut(s) 514
Kzo9I GATC 2 cut(s) 379, 574
LmnI GCTCC 1 cut(s) 533
MaeI CTAG 2 cut(s) 153, 563
MaeIII GTNAC 2 cut(s) 18, 322
MalI GATC 2 cut(s) 381, 576
MboI GATC 2 cut(s) 379, 574
MboII GAAGA 3 cut(s) 239, 383, 503
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 1 cut(s) 425
MluCI AATT 2 cut(s) 259, 548
MnlI CCTC 7 cut(s) 23, 74, 110, 433, 481, 491, 519
MroI TCCGGA 1 cut(s) 514
MseI TTAA 1 cut(s) 174
MspI CCGG 2 cut(s) 515, 529
MspR9I CCNGG 3 cut(s) 164, 286, 530
MvaI CCWGG 2 cut(s) 164, 286
NciI CCSGG 1 cut(s) 530
NdeII GATC 2 cut(s) 379, 574
NlaIII CATG 5 cut(s) 50, 146, 200, 395, 439
NmuCI GTSAC 1 cut(s) 322
PagI TCATGA 1 cut(s) 196
PfeI GAWTC 3 cut(s) 193, 374, 581
Psp6I CCWGG 2 cut(s) 162, 284
PspGI CCWGG 2 cut(s) 162, 284
PsuI RGATCY 1 cut(s) 574
RsaI GTAC 3 cut(s) 5, 168, 300
RsaNI GTAC 3 cut(s) 4, 167, 299
SaqAI TTAA 1 cut(s) 174
Sau3AI GATC 2 cut(s) 379, 574
ScrFI CCNGG 3 cut(s) 164, 286, 530
SduI GDGCHC 1 cut(s) 425
SetI ASST 7 cut(s) 15, 180, 255, 281, 342, 483, 568
Sse9I AATT 2 cut(s) 259, 548
SsiI CCGC 2 cut(s) 39, 304
SspMI CTAG 2 cut(s) 153, 563
StyD4I CCNGG 3 cut(s) 162, 284, 528
StyI CCWWGG 1 cut(s) 178
TaqI TCGA 1 cut(s) 382
TasI AATT 2 cut(s) 259, 548
TatI WGTACW 1 cut(s) 298
TfiI GAWTC 3 cut(s) 193, 374, 581
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 2 cut(s) 123, 423
TseFI GTSAC 1 cut(s) 322
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 2 cut(s) 185, 380
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 2 cut(s) 123, 423
XagI CCTNNNNNAGG 1 cut(s) 485
XspI CTAG 2 cut(s) 153, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.