Rh5DG103300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000289
Physical Location & Seq
Forward (+)
9414114 .. 9414464
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG103300.1

Sequence Viewer

Length: 351 bp
ATGTTCAACAAAATCGTGGAAGTGTGTGGATGTGTGGCTCTACTATATGTCATTGAGCAACAGCAGCAGATCGAGCTATGGGTTTTGAGGGACTCCCGGAATCACCGGTGGGTGAAGGAGACGATTCGTGCTCCTTTTCCGGTGATGGGACTCGGGCGACGTGCTCTGTATAGGATCCTCACAAGAGGAAAGTTTGTGTTCTTCAGGGGAGATGATAGGGTGTTTTATTATGATATGGAGAGTAGGAGTTTAGACGGCAGTGAAATAATCTGGCCCCAAGGGATTCGTGGAATGAGAGAGTGGTTGCGGTTGGTGGAGATGTATGATGATACCATTGTCTCATTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

116

Amino Acids

13.95

Weight (kDa)

9.09

Isoelectric Point (pI)

65.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 10 - 88 2.3e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 307
AclWI GGATC 2 cut(s) 169, 182
AcuI CTGAAG 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 146
AgeI ACCGGT 1 cut(s) 105
AgsI TTSAA 1 cut(s) 7
AjiI CACGTC 1 cut(s) 161
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw21I GWGCWC 2 cut(s) 133, 166
Alw26I GTCTC 2 cut(s) 113, 343
AlwI GGATC 2 cut(s) 169, 182
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 1 cut(s) 272
ApeKI GCWGC 1 cut(s) 64
AsiGI ACCGGT 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 273
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 3 cut(s) 95, 124, 154
AvaI CYCGRG 1 cut(s) 152
BaeI ACNNNNGTAYC 1 cut(s) 321
BamHI GGATCC 1 cut(s) 174
Bbv12I GWGCWC 2 cut(s) 133, 166
BbvI GCAGC 1 cut(s) 76
BccI CCATC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 271
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 2 cut(s) 113, 343
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 152
BmgBI CACGTC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 2 cut(s) 176, 275
BmrFI CCNGG 1 cut(s) 97
BpuMI CCSGG 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 277
BsaWI WCCGGW 2 cut(s) 105, 139
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse118I RCCGGY 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 146
BseXI GCAGC 1 cut(s) 76
BshFI GGCC 1 cut(s) 274
BshTI ACCGGT 1 cut(s) 105
BsiHKAI GWGCWC 2 cut(s) 133, 166
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 3 cut(s) 97, 106, 140
BslFI GGGAC 2 cut(s) 104, 162
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 2 cut(s) 113, 343
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 2 cut(s) 104, 162
BsnI GGCC 1 cut(s) 274
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 133, 166
Bsp143I GATC 2 cut(s) 69, 174
BspACI CCGC 1 cut(s) 307
BspANI GGCC 1 cut(s) 274
BspLI GGNNCC 2 cut(s) 176, 275
BspPI GGATC 2 cut(s) 169, 182
BsrFI RCCGGY 1 cut(s) 105
BssAI RCCGGY 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 2 cut(s) 69, 174
BssT1I CCWWGG 1 cut(s) 277
BstF5I GGATG 1 cut(s) 35
BstKTI GATC 2 cut(s) 72, 177
BstMAI GTCTC 2 cut(s) 113, 343
BstMBI GATC 2 cut(s) 69, 174
BstMWI GCNNNNNNNGC 2 cut(s) 64, 73
BstSCI CCNGG 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BsuRI GGCC 1 cut(s) 274
BtrI CACGTC 1 cut(s) 161
BtsCI GGATG 1 cut(s) 35
BtsI GCAGTG 1 cut(s) 265
BtsIMutI CAGTG 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 273
CspAI ACCGGT 1 cut(s) 105
CviJI RGCY 3 cut(s) 38, 76, 274
CviKI_1 RGCY 3 cut(s) 38, 76, 274
DpnI GATC 2 cut(s) 71, 176
DpnII GATC 2 cut(s) 69, 174
Eco130I CCWWGG 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 187
Eco88I CYCGRG 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 277
Esp3I CGTCTC 1 cut(s) 113
FaiI YATR 7 cut(s) 46, 48, 79, 171, 231, 236, 324
FaqI GGGAC 2 cut(s) 104, 162
Fnu4HI GCNGC 1 cut(s) 65
FokI GGATG 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 65
HaeIII GGCC 1 cut(s) 274
HapII CCGG 3 cut(s) 97, 106, 140
HinfI GANTC 5 cut(s) 92, 100, 124, 150, 283
HpaII CCGG 3 cut(s) 97, 106, 140
HphI GGTGA 3 cut(s) 95, 124, 154
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 73
HpySE526I ACGT 1 cut(s) 160
Kzo9I GATC 2 cut(s) 69, 174
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 5 cut(s) 110, 119, 153, 190, 256
Lsp1109I GCAGC 1 cut(s) 76
MaeII ACGT 1 cut(s) 160
MalI GATC 2 cut(s) 71, 176
MboI GATC 2 cut(s) 69, 174
MboII GAAGA 1 cut(s) 193
MflI RGATCY 1 cut(s) 174
MhlI GDGCHC 2 cut(s) 133, 166
MlyI GAGTC 2 cut(s) 86, 144
MnlI CCTC 3 cut(s) 81, 179, 188
MslI CAYNNNNRTG 1 cut(s) 346
MspI CCGG 3 cut(s) 97, 106, 140
MspR9I CCNGG 1 cut(s) 97
MwoI GCNNNNNNNGC 2 cut(s) 64, 73
NciI CCSGG 1 cut(s) 97
NdeII GATC 2 cut(s) 69, 174
NlaIV GGNNCC 2 cut(s) 176, 275
PfeI GAWTC 3 cut(s) 100, 124, 283
PfoI TCCNGGA 1 cut(s) 95
PinAI ACCGGT 1 cut(s) 105
PkrI GCNGC 1 cut(s) 66
PleI GAGTC 2 cut(s) 86, 144
PpsI GAGTC 2 cut(s) 86, 144
PspN4I GGNNCC 2 cut(s) 176, 275
PspPI GGNCC 1 cut(s) 273
PsuI RGATCY 1 cut(s) 174
RseI CAYNNNNRTG 1 cut(s) 346
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 2 cut(s) 69, 174
Sau96I GGNCC 1 cut(s) 273
SchI GAGTC 2 cut(s) 86, 144
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 2 cut(s) 133, 166
SetI ASST 2 cut(s) 78, 163
SgrAI CRCCGGYG 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 346
SsiI CCGC 1 cut(s) 307
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 277
TaiI ACGT 1 cut(s) 163
TaqI TCGA 1 cut(s) 72
TfiI GAWTC 3 cut(s) 100, 124, 283
TscAI CASTG 1 cut(s) 265
TseI GCWGC 1 cut(s) 64
TspRI CASTG 1 cut(s) 265
XcmI CCANNNNNNNNNTGG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.