RLG00000019743

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000289
Physical Location & Seq
Forward (+)
56201892 .. 56203077
1186 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019743

Sequence Viewer

Length: 1092 bp
ATGCCTATAGAATATTACAACATTGCAAAGCTTCCCATCGACATCATATTGTTTGAGATATTCTCAAGATTACCGGTCAAGTCCTTGATACGGTTTAGGTGCGTATGCAAATCTTGGTCCTCCCTCATCCGCCATCCTTTCTTTGTCAGAACCTGCCAAAAGTTGCAGACTCAATCATGCCATAACCACCACCTCCTTCTCAGATTTTGGAACCCAGTCACTAGTCGGTGGCACTTGCTCTCCGCACAATTCAACCAAGAAGGGAGTATTAGCACCACCGACATCCTTCTAAGCCATCATGGACGGTTAGTATGCTCCAATATGATAAGTATCAATGGCTTAATCTGTGTTTATAATCAAGAGGACCTTGTTGATGATGGTAATCGTCTTCATCATCATGCACCTACTGAGCTGGACAACCCCGTTATATTTAACCCCTGCACCCGAGAGTCCATCACTCTTCCCCATGCCTTAAATACTAGCCGGAGCCACTACTTGATTTTCACTCTTGGTGGTACAAGTAGTTCATGGAGGCATCTAGAGATAGAAGACAAAGACTTCGATGATCTTGCTCTTGATTATCAAAATTTACTGTTTAAGAGGAGATCTGTGTTCCTCCACGGGGCCAGACATTGGCTGGAAACGAATATTAAGGATGAACTTGTTATATTGGTTTTTGACTTTGAACAAGAGCGATTCAGAGTAATCCCATTGCCTCGAGAATATCATAAAGATCGTGGTGGTGCTACTCCTTTTATGGAAATGATTGAAGTGAATGAATGTGTTGCAATAAATGATCTCGACTTCTCATATGAAGGAAATGTTATAAGTTTATGGATTTTGAAGGATTACCAACATCTGGTGTGGGTTAAAGAGAGTATCATCTTTCCCACTAAATGGAACAAGATGGGATTCCCTTTTCCTAGGTTCTCAATCTACACAGGCGAGCTCCTGCTTAGAGGGCCATCTTGTATGAACAAGGTGCTTCTTTATAACCTAAACAATAAGCGTTTTACGACGATTCAAGATTCTATGCCACAAATCTTGGGTAGTTATCATGAAAGCATTTTTCCCATAGCCGCTTCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

364

Amino Acids

42.45

Weight (kDa)

6.81

Isoelectric Point (pI)

59.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 10 - 48 1.7e-10 F-box domain
F-box-like PF12937 10 - 48 3.7e-08 F-box-like
FBA_3 PF08268 161 - 341 2.5e-14 F-box associated beta propeller domain
FBA_1 PF07734 162 - 286 2.2e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 354, 827, 993
Acc36I ACCTGC 1 cut(s) 161
AccB7I CCANNNNNTGG 3 cut(s) 633, 859, 897
AciI CCGC 3 cut(s) 130, 243, 1080
AcsI RAATTY 1 cut(s) 586
AfaI GTAC 1 cut(s) 517
AfiI CCNNNNNNNGG 5 cut(s) 90, 622, 633, 859, 897
AgeI ACCGGT 1 cut(s) 73
AgsI TTSAA 5 cut(s) 253, 686, 770, 844, 1025
AhlI ACTAGT 1 cut(s) 221
AluBI AGCT 3 cut(s) 31, 412, 949
AluI AGCT 3 cut(s) 31, 412, 949
Alw21I GWGCWC 1 cut(s) 951
AlwNI CAGNNNCTG 1 cut(s) 153
Ama87I CYCGRG 2 cut(s) 444, 717
AoxI GGCC 2 cut(s) 624, 962
ApoI RAATTY 1 cut(s) 586
ArsI GACNNNNNNTTYG 2 cut(s) 542, 574
AsiGI ACCGGT 1 cut(s) 73
AspA2I CCTAGG 1 cut(s) 923
AspS9I GGNCC 4 cut(s) 117, 364, 624, 962
AvaI CYCGRG 2 cut(s) 444, 717
AvaII GGWCC 2 cut(s) 117, 364
AvrII CCTAGG 1 cut(s) 923
BanII GRGCYC 1 cut(s) 951
BbsI GAAGAC 2 cut(s) 380, 555
Bbv12I GWGCWC 1 cut(s) 951
BccI CCATC 7 cut(s) 44, 141, 303, 371, 461, 901, 973
BcgI CGANNNNNNTGC 2 cut(s) 551, 585
BcuI ACTAGT 1 cut(s) 221
BfaI CTAG 4 cut(s) 222, 480, 539, 924
BfmI CTRYAG 1 cut(s) 6
BfuAI ACCTGC 1 cut(s) 161
BglII AGATCT 1 cut(s) 605
BisI GCNGC 1 cut(s) 1080
BlnI CCTAGG 1 cut(s) 923
BlsI GCNGC 1 cut(s) 1081
Bme18I GGWCC 2 cut(s) 117, 364
BmeT110I CYCGRG 2 cut(s) 444, 717
BmgT120I GGNCC 4 cut(s) 117, 364, 624, 962
BmiI GGNNCC 3 cut(s) 212, 488, 625
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 544
BmuI ACTGGG 1 cut(s) 209
BpiI GAAGAC 2 cut(s) 380, 555
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpuEI CTTGAG 1 cut(s) 49
BsaBI GATNNNNATC 2 cut(s) 329, 381
BsaJI CCNNGG 2 cut(s) 619, 923
BsaWI WCCGGW 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 5 cut(s) 90, 622, 633, 859, 897
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 215
Bse3DI GCAATG 2 cut(s) 21, 710
Bse8I GATNNNNATC 2 cut(s) 329, 381
BseDI CCNNGG 2 cut(s) 619, 923
BseGI GGATG 4 cut(s) 126, 133, 282, 661
BseJI GATNNNNATC 2 cut(s) 329, 381
BseLI CCNNNNNNNGG 5 cut(s) 90, 622, 633, 859, 897
BseMI GCAATG 2 cut(s) 21, 710
BseMII CTCAG 2 cut(s) 214, 399
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 1 cut(s) 616
BsgI GTGCAG 1 cut(s) 424
BshFI GGCC 2 cut(s) 626, 964
BshTI ACCGGT 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 951
BsiHKCI CYCGRG 2 cut(s) 444, 717
BsiSI CCGG 2 cut(s) 74, 484
BslI CCNNNNNNNGG 5 cut(s) 90, 622, 633, 859, 897
BsnI GGCC 2 cut(s) 626, 964
BsoBI CYCGRG 2 cut(s) 444, 717
Bsp1286I GDGCHC 1 cut(s) 951
Bsp143I GATC 4 cut(s) 565, 605, 733, 796
BspACI CCGC 3 cut(s) 130, 243, 1080
BspANI GGCC 2 cut(s) 626, 964
BspCNI CTCAG 2 cut(s) 213, 400
BspHI TCATGA 1 cut(s) 1057
BspLI GGNNCC 3 cut(s) 212, 488, 625
BspMI ACCTGC 1 cut(s) 161
BsrDI GCAATG 2 cut(s) 21, 710
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 619, 923
BssMI GATC 4 cut(s) 565, 605, 733, 796
BssT1I CCWWGG 1 cut(s) 923
Bst4CI ACNGT 3 cut(s) 93, 306, 594
Bst6I CTCTTC 1 cut(s) 465
BstC8I GCNNGC 1 cut(s) 947
BstDEI CTNAG 4 cut(s) 200, 290, 408, 956
BstDSI CCRYGG 1 cut(s) 619
BstF5I GGATG 4 cut(s) 126, 133, 282, 661
BstKTI GATC 4 cut(s) 568, 608, 736, 799
BstMBI GATC 4 cut(s) 565, 605, 733, 796
BstMWI GCNNNNNNNGC 1 cut(s) 961
BstSFI CTRYAG 1 cut(s) 6
BstV2I GAAGAC 2 cut(s) 380, 555
BstX2I RGATCY 1 cut(s) 605
BstYI RGATCY 1 cut(s) 605
BsuRI GGCC 2 cut(s) 626, 964
BtgI CCRYGG 1 cut(s) 619
BtsCI GGATG 4 cut(s) 126, 133, 282, 661
BveI ACCTGC 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 947
CaiI CAGNNNCTG 1 cut(s) 153
CciI TCATGA 1 cut(s) 1057
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 4 cut(s) 117, 364, 624, 962
Csp6I GTAC 1 cut(s) 516
CspAI ACCGGT 1 cut(s) 73
CspCI CAANNNNNGTGG 2 cut(s) 1026, 1061
CviAII CATG 7 cut(s) 177, 299, 398, 467, 528, 1058, 1089
CviQI GTAC 1 cut(s) 516
DdeI CTNAG 4 cut(s) 200, 290, 408, 956
DpnI GATC 4 cut(s) 567, 607, 735, 798
DpnII GATC 4 cut(s) 565, 605, 733, 796
Eam1104I CTCTTC 1 cut(s) 465
EarI CTCTTC 1 cut(s) 465
EciI GGCGGA 1 cut(s) 119
Ecl136II GAGCTC 1 cut(s) 949
Eco130I CCWWGG 1 cut(s) 923
Eco24I GRGCYC 1 cut(s) 951
Eco47I GGWCC 2 cut(s) 117, 364
Eco53kI GAGCTC 1 cut(s) 949
Eco88I CYCGRG 2 cut(s) 444, 717
EcoICRI GAGCTC 1 cut(s) 949
EcoO109I RGGNCCY 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 923
EcoT38I GRGCYC 1 cut(s) 951
ErhI CCWWGG 1 cut(s) 923
FaeI CATG 7 cut(s) 180, 302, 401, 470, 531, 1061, 1092
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FatI CATG 7 cut(s) 176, 298, 397, 466, 527, 1057, 1088
FauNDI CATATG 1 cut(s) 811
Fnu4HI GCNGC 1 cut(s) 1080
FokI GGATG 4 cut(s) 113, 120, 269, 668
FriOI GRGCYC 1 cut(s) 951
Fsp4HI GCNGC 1 cut(s) 1080
FspBI CTAG 4 cut(s) 222, 480, 539, 924
GluI GCNGC 1 cut(s) 1080
HaeIII GGCC 2 cut(s) 626, 964
HapII CCGG 2 cut(s) 74, 484
Hin1II CATG 7 cut(s) 180, 302, 401, 470, 531, 1061, 1092
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 6 cut(s) 169, 449, 696, 912, 1021, 1028
HpaII CCGG 2 cut(s) 74, 484
Hpy188I TCNGA 3 cut(s) 149, 203, 701
Hpy188III TCNNGA 8 cut(s) 66, 359, 539, 575, 719, 800, 1025, 1058
Hpy99I CGWCG 1 cut(s) 1021
HpyAV CCTTC 5 cut(s) 206, 254, 296, 809, 838
HpyCH4III ACNGT 3 cut(s) 93, 306, 594
HpyCH4V TGCA 6 cut(s) 26, 108, 166, 401, 441, 788
HpyF10VI GCNNNNNNNGC 1 cut(s) 961
HpyF3I CTNAG 4 cut(s) 200, 290, 408, 956
Hsp92II CATG 7 cut(s) 180, 302, 401, 470, 531, 1061, 1092
Kzo9I GATC 4 cut(s) 565, 605, 733, 796
LmnI GCTCC 3 cut(s) 320, 486, 954
LweI GCATC 1 cut(s) 544
MaeI CTAG 4 cut(s) 222, 480, 539, 924
MaeIII GTNAC 1 cut(s) 217
MalI GATC 4 cut(s) 567, 607, 735, 798
MboI GATC 4 cut(s) 565, 605, 733, 796
MboII GAAGA 3 cut(s) 380, 452, 560
MflI RGATCY 1 cut(s) 605
MhlI GDGCHC 1 cut(s) 951
MluCI AATT 2 cut(s) 248, 586
MlyI GAGTC 2 cut(s) 163, 458
MnlI CCTC 9 cut(s) 130, 134, 203, 355, 525, 594, 626, 726, 953
MseI TTAA 6 cut(s) 341, 432, 473, 597, 651, 870
MslI CAYNNNNRTG 1 cut(s) 396
MspI CCGG 2 cut(s) 74, 484
MwoI GCNNNNNNNGC 1 cut(s) 961
NdeI CATATG 1 cut(s) 811
NdeII GATC 4 cut(s) 565, 605, 733, 796
NlaIII CATG 7 cut(s) 180, 302, 401, 470, 531, 1061, 1092
NlaIV GGNNCC 3 cut(s) 212, 488, 625
NmuCI GTSAC 1 cut(s) 217
PaeR7I CTCGAG 1 cut(s) 717
PagI TCATGA 1 cut(s) 1057
PfeI GAWTC 4 cut(s) 696, 912, 1021, 1028
PflMI CCANNNNNTGG 3 cut(s) 633, 859, 897
PinAI ACCGGT 1 cut(s) 73
PkrI GCNGC 1 cut(s) 1081
PleI GAGTC 2 cut(s) 163, 457
PpsI GAGTC 2 cut(s) 163, 457
PpuMI RGGWCCY 1 cut(s) 364
PsiI TTATAA 3 cut(s) 354, 827, 993
Psp124BI GAGCTC 1 cut(s) 951
Psp5II RGGWCCY 1 cut(s) 364
PspN4I GGNNCC 3 cut(s) 212, 488, 625
PspPI GGNCC 4 cut(s) 117, 364, 624, 962
PspPPI RGGWCCY 1 cut(s) 364
PsrI GAACNNNNNNTAC 2 cut(s) 508, 540
PstNI CAGNNNCTG 1 cut(s) 153
PsuI RGATCY 1 cut(s) 605
RsaI GTAC 1 cut(s) 517
RsaNI GTAC 1 cut(s) 516
RseI CAYNNNNRTG 1 cut(s) 396
SacI GAGCTC 1 cut(s) 951
SaqAI TTAA 6 cut(s) 341, 432, 473, 597, 651, 870
SatI GCNGC 1 cut(s) 1080
Sau3AI GATC 4 cut(s) 565, 605, 733, 796
Sau96I GGNCC 4 cut(s) 117, 364, 624, 962
SchI GAGTC 2 cut(s) 163, 458
SduI GDGCHC 1 cut(s) 951
SfaNI GCATC 1 cut(s) 544
SfcI CTRYAG 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 717
SinI GGWCC 2 cut(s) 117, 364
SlaI CTCGAG 1 cut(s) 717
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 2 cut(s) 64, 717
SmoI CTYRAG 2 cut(s) 64, 717
SpeI ACTAGT 1 cut(s) 221
Sse9I AATT 2 cut(s) 248, 586
SsiI CCGC 3 cut(s) 130, 243, 1080
SspI AATATT 2 cut(s) 14, 649
SspMI CTAG 4 cut(s) 222, 480, 539, 924
SstI GAGCTC 1 cut(s) 951
StyI CCWWGG 1 cut(s) 923
TaaI ACNGT 3 cut(s) 93, 306, 594
TaqI TCGA 4 cut(s) 39, 561, 718, 801
TasI AATT 2 cut(s) 248, 586
TauI GCSGC 1 cut(s) 1082
TfiI GAWTC 4 cut(s) 696, 912, 1021, 1028
Tru1I TTAA 6 cut(s) 341, 432, 473, 597, 651, 870
Tru9I TTAA 6 cut(s) 341, 432, 473, 597, 651, 870
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 7 cut(s) 380, 516, 672, 792, 828, 989, 1074
Van91I CCANNNNNTGG 3 cut(s) 633, 859, 897
VpaK11BI GGWCC 2 cut(s) 117, 364
XapI RAATTY 1 cut(s) 586
XbaI TCTAGA 1 cut(s) 538
XcmI CCANNNNNNNNNTGG 1 cut(s) 634
XhoI CTCGAG 1 cut(s) 717
XmaJI CCTAGG 1 cut(s) 923
XspI CTAG 4 cut(s) 222, 480, 539, 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.