RLG00000030139

F-box associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000289
Physical Location & Seq
Forward (+)
56248247 .. 56249711
1465 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030139

Sequence Viewer

Length: 1233 bp
ATGGAAGTTGAACCTGATGTTGCAAAGTTCATCCCATGCGACATCATACTGTCTCATATCCTCCCCAAGCTACCTGACAAGTCCCTGATGAGGTTTAAGTGCGTCTGCAAATCTTGGTCCTCTCTCATCCGCGATCTTTTCTTTCTCAGGGTATATGGGAACTTGCACAACAGCCCCACTACTCACCTCATCGTCTTCTTCTGGCAACACGAGATCGAACCCAAAAGACCAAAACGCTTTCTCTCCATGCAAATCAACCAGGAAGGGATTTGTCCTACACCTCCCATCGACCTGCTTGTAAATCTAAGCAACACTCCACATTTGTCATCCTTTTCACGGGACCATGAATGCCATGCCATCGCCGATGCTGGCTTAATCAGTCTTTTTGATTCCTCGTGTGAGGATGACGCTTCCCCAGCTTATGTCTTTAATTCCAACACCCGAGAGTTTATTGCTCTTCCAGACACTCTGCGGGATAAATCAGCCCGTCCAAAGTCTCCAAACTATGAGACAGTCAGTTATGCTTATTGTATCGGGTTCACTCCTCTAGCTAACGAGTATAAGGTTCTCCAAGTGAAACATCGTTTGTTTTTCAATCCGGATCGGCAAAACAGTATCATGTTCAAGATTTTCACTCTGGGTACTAGTACTGCATCATGGAGGGATGTAGAAGTAGAGATAGACGTCCTTGATGAGTTGGCTCTATGTTTTCTAGATTTTGTGTTTGGGAAAACGGTGTGCATCTATGGGGCCTTACACTGGATAATTATAATGAATAAAAAGGACCAAATTGTTATATTGGCCTTCGACGTTGGAGAAGAGAGATTTAGAGTAATCTCACCCCCTCGAGATTATGAATGTCGTTCTCCTCCGTATACAGTTGATGCAATACTTGAAGTGAATGGATGGGTGGCTGTATACGGTGTTCCGAAGTTGTCGAATGCAAGGGTCATGGACTTGTGGATTTTGAAGGATTACCAAAATCAAGTGTGGGTTAAGGAGAGCATCATCTTTCCCGATCCATGGGATGAATTGGGAAAGCCTCTTCCTGTTTGCTCAATCCACACAGGTGAACTCCTGCTTCAGCAGAGCGACAACTCAGCTCCTTCTCACTCCTTGCATCTTTACGATATGAGAATTAAAAGTTATAAGAAAGTTGAAAGGCGTCCACTGTTCATTCACGCCGCACTGTTCATTCATGTCATACTGTTCATTCACGCCGCAATTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

411

Amino Acids

47.17

Weight (kDa)

6.31

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 123 - 388 5.1e-32 F-box associated beta propeller domain
FBA_1 PF07734 171 - 329 5.7e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 770, 1149
AatII GACGTC 1 cut(s) 687
Acc36I ACCTGC 1 cut(s) 300
AccI GTMKAC 2 cut(s) 875, 918
AccII CGCG 1 cut(s) 132
AccIII TCCGGA 1 cut(s) 598
AciI CCGC 4 cut(s) 130, 472, 1185, 1221
AclWI GGATC 2 cut(s) 609, 1013
AcuI CTGAAG 1 cut(s) 1067
AcyI GRCGYC 2 cut(s) 684, 1165
AfaI GTAC 2 cut(s) 643, 649
AfiI CCNNNNNNNGG 4 cut(s) 90, 336, 759, 1023
AgsI TTSAA 6 cut(s) 11, 595, 625, 896, 970, 1160
AhlI ACTAGT 1 cut(s) 644
AjnI CCWGG 1 cut(s) 258
AleI CACNNNNGTG 1 cut(s) 1068
AluBI AGCT 4 cut(s) 70, 419, 551, 1103
AluI AGCT 4 cut(s) 70, 419, 551, 1103
Alw26I GTCTC 3 cut(s) 57, 501, 503
AlwI GGATC 2 cut(s) 609, 1013
Ama87I CYCGRG 2 cut(s) 441, 846
Aor13HI TCCGGA 1 cut(s) 598
AoxI GGCC 2 cut(s) 750, 801
AspS9I GGNCC 4 cut(s) 117, 340, 750, 784
AsuHPI GGTGA 3 cut(s) 176, 831, 1082
AvaI CYCGRG 2 cut(s) 441, 846
AvaII GGWCC 3 cut(s) 117, 340, 784
BauI CACGAG 2 cut(s) 209, 394
BbsI GAAGAC 1 cut(s) 187
BccI CCATC 3 cut(s) 293, 365, 900
BciT130I CCWGG 1 cut(s) 260
BcoDI GTCTC 3 cut(s) 57, 501, 503
BcuI ACTAGT 1 cut(s) 644
BfaI CTAG 3 cut(s) 548, 645, 713
BfuAI ACCTGC 1 cut(s) 300
BisI GCNGC 2 cut(s) 1185, 1221
BlsI GCNGC 2 cut(s) 1186, 1222
BmcAI AGTACT 1 cut(s) 649
Bme1390I CCNGG 1 cut(s) 260
Bme18I GGWCC 3 cut(s) 117, 340, 784
BmeT110I CYCGRG 2 cut(s) 441, 846
BmgT120I GGNCC 4 cut(s) 117, 340, 750, 784
BmiI GGNNCC 2 cut(s) 341, 751
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 6 cut(s) 355, 662, 750, 874, 1014, 1129
BpiI GAAGAC 1 cut(s) 187
BsaHI GRCGYC 2 cut(s) 684, 1165
BsaJI CCNNGG 1 cut(s) 1022
BsaWI WCCGGW 1 cut(s) 598
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 336, 759, 1023
Bse1I ACTGG 1 cut(s) 764
BseAI TCCGGA 1 cut(s) 598
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 1022
BseGI GGATG 7 cut(s) 30, 126, 326, 409, 670, 911, 1033
BseLI CCNNNNNNNGG 4 cut(s) 90, 336, 759, 1023
BseMII CTCAG 2 cut(s) 160, 1113
BseNI ACTGG 1 cut(s) 764
BseRI GAGGAG 2 cut(s) 534, 858
BseYI CCCAGC 1 cut(s) 415
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 2 cut(s) 752, 803
BsiHKCI CYCGRG 2 cut(s) 441, 846
BsiSI CCGG 1 cut(s) 599
BslFI GGGAC 2 cut(s) 67, 353
BslI CCNNNNNNNGG 4 cut(s) 90, 336, 759, 1023
BsmAI GTCTC 3 cut(s) 57, 501, 503
BsmFI GGGAC 2 cut(s) 67, 353
BsmI GAATGC 2 cut(s) 353, 946
BsnI GGCC 2 cut(s) 752, 803
BsoBI CYCGRG 2 cut(s) 441, 846
Bsp13I TCCGGA 1 cut(s) 598
Bsp143I GATC 4 cut(s) 133, 213, 601, 1018
Bsp19I CCATGG 1 cut(s) 1022
BspACI CCGC 4 cut(s) 130, 472, 1185, 1221
BspANI GGCC 2 cut(s) 752, 803
BspCNI CTCAG 2 cut(s) 159, 1112
BspEI TCCGGA 1 cut(s) 598
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 341, 751
BspMI ACCTGC 1 cut(s) 300
BspPI GGATC 2 cut(s) 609, 1013
BspQI GCTCTTC 1 cut(s) 462
BsrI ACTGG 1 cut(s) 764
BssECI CCNNGG 1 cut(s) 1022
BssMI GATC 4 cut(s) 133, 213, 601, 1018
BssNAI GTATAC 2 cut(s) 876, 919
BssNI GRCGYC 2 cut(s) 684, 1165
BssSI CACGAG 2 cut(s) 209, 394
BssT1I CCWWGG 1 cut(s) 1022
Bst1107I GTATAC 2 cut(s) 876, 919
Bst2BI CACGAG 2 cut(s) 209, 394
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 9 cut(s) 51, 514, 614, 736, 880, 923, 1173, 1191, 1209
Bst6I CTCTTC 3 cut(s) 462, 813, 1050
BstACI GRCGYC 2 cut(s) 684, 1165
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 3 cut(s) 146, 305, 1099
BstDSI CCRYGG 1 cut(s) 1022
BstF5I GGATG 7 cut(s) 30, 126, 326, 409, 670, 911, 1033
BstFNI CGCG 1 cut(s) 132
BstKTI GATC 4 cut(s) 136, 216, 604, 1021
BstMAI GTCTC 3 cut(s) 57, 501, 503
BstMBI GATC 4 cut(s) 133, 213, 601, 1018
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 258
BstUI CGCG 1 cut(s) 132
BstV2I GAAGAC 1 cut(s) 187
BstZ17I GTATAC 2 cut(s) 876, 919
BsuRI GGCC 2 cut(s) 752, 803
BtgI CCRYGG 1 cut(s) 1022
BtgZI GCGATG 1 cut(s) 343
BtsCI GGATG 7 cut(s) 30, 126, 326, 409, 670, 911, 1033
BtsIMutI CAGTG 3 cut(s) 757, 1169, 1187
BveI ACCTGC 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 370
Cfr13I GGNCC 4 cut(s) 117, 340, 750, 784
CseI GACGC 3 cut(s) 91, 416, 1154
Csp6I GTAC 2 cut(s) 642, 648
CviAII CATG 9 cut(s) 36, 247, 344, 353, 619, 657, 952, 1023, 1199
CviQI GTAC 2 cut(s) 642, 648
DdeI CTNAG 3 cut(s) 146, 305, 1099
DpnI GATC 4 cut(s) 135, 215, 603, 1020
DpnII GATC 4 cut(s) 133, 213, 601, 1018
Eam1104I CTCTTC 3 cut(s) 462, 813, 1050
EarI CTCTTC 3 cut(s) 462, 813, 1050
Eco130I CCWWGG 1 cut(s) 1022
Eco47I GGWCC 3 cut(s) 117, 340, 784
Eco57I CTGAAG 1 cut(s) 1067
Eco88I CYCGRG 2 cut(s) 441, 846
EcoO109I RGGNCCY 1 cut(s) 750
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 1022
ErhI CCWWGG 1 cut(s) 1022
FaeI CATG 9 cut(s) 39, 250, 347, 356, 622, 660, 955, 1026, 1202
FaqI GGGAC 2 cut(s) 67, 353
FatI CATG 9 cut(s) 35, 246, 343, 352, 618, 656, 951, 1022, 1198
FauI CCCGC 1 cut(s) 465
FblI GTMKAC 2 cut(s) 875, 918
Fnu4HI GCNGC 2 cut(s) 1185, 1221
FokI GGATG 7 cut(s) 17, 113, 313, 416, 677, 918, 1040
Fsp4HI GCNGC 2 cut(s) 1185, 1221
FspBI CTAG 3 cut(s) 548, 645, 713
GluI GCNGC 2 cut(s) 1185, 1221
GsaI CCCAGC 1 cut(s) 419
HaeIII GGCC 2 cut(s) 752, 803
HapII CCGG 1 cut(s) 599
HgaI GACGC 3 cut(s) 91, 416, 1154
Hin1I GRCGYC 2 cut(s) 684, 1165
Hin1II CATG 9 cut(s) 39, 250, 347, 356, 622, 660, 955, 1026, 1202
HinfI GANTC 1 cut(s) 389
HpaII CCGG 1 cut(s) 599
HphI GGTGA 3 cut(s) 176, 831, 1082
Hpy166II GTNNAC 5 cut(s) 540, 876, 919, 1073, 1169
Hpy188I TCNGA 1 cut(s) 930
Hpy188III TCNNGA 6 cut(s) 461, 599, 625, 713, 848, 1016
Hpy8I GTNNAC 5 cut(s) 540, 876, 919, 1073, 1169
Hpy99I CGWCG 1 cut(s) 812
HpyAV CCTTC 4 cut(s) 257, 814, 964, 1116
HpyCH4III ACNGT 9 cut(s) 51, 514, 614, 736, 880, 923, 1173, 1191, 1209
HpyCH4IV ACGT 2 cut(s) 684, 810
HpyCH4V TGCA 9 cut(s) 23, 108, 166, 250, 653, 741, 887, 944, 1120
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 3 cut(s) 146, 305, 1099
HpySE526I ACGT 2 cut(s) 684, 810
Hsp92I GRCGYC 2 cut(s) 684, 1165
Hsp92II CATG 9 cut(s) 39, 250, 347, 356, 622, 660, 955, 1026, 1202
Kpn2I TCCGGA 1 cut(s) 598
Kzo9I GATC 4 cut(s) 133, 213, 601, 1018
LguI GCTCTTC 1 cut(s) 462
LmnI GCTCC 1 cut(s) 1108
LweI GCATC 6 cut(s) 355, 662, 750, 874, 1014, 1129
MaeI CTAG 3 cut(s) 548, 645, 713
MaeII ACGT 2 cut(s) 684, 810
MalI GATC 4 cut(s) 135, 215, 603, 1020
MboI GATC 4 cut(s) 133, 213, 601, 1018
MboII GAAGA 5 cut(s) 187, 190, 449, 830, 1037
MluCI AATT 6 cut(s) 430, 765, 789, 1031, 1137, 1224
MmeI TCCRAC 2 cut(s) 459, 793
MroI TCCGGA 1 cut(s) 598
MseI TTAA 6 cut(s) 96, 374, 429, 996, 1140, 1227
MslI CAYNNNNRTG 1 cut(s) 1068
MspI CCGG 1 cut(s) 599
MspR9I CCNGG 1 cut(s) 260
Mva1269I GAATGC 2 cut(s) 353, 946
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 416
NcoI CCATGG 1 cut(s) 1022
NdeII GATC 4 cut(s) 133, 213, 601, 1018
NlaIII CATG 9 cut(s) 39, 250, 347, 356, 622, 660, 955, 1026, 1202
NlaIV GGNNCC 2 cut(s) 341, 751
OliI CACNNNNGTG 1 cut(s) 1068
PaeR7I CTCGAG 1 cut(s) 846
PciSI GCTCTTC 1 cut(s) 462
PctI GAATGC 2 cut(s) 353, 946
PfeI GAWTC 1 cut(s) 389
PkrI GCNGC 2 cut(s) 1186, 1222
PsiI TTATAA 2 cut(s) 770, 1149
Psp6I CCWGG 1 cut(s) 258
PspFI CCCAGC 1 cut(s) 415
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 2 cut(s) 341, 751
PspPI GGNCC 4 cut(s) 117, 340, 750, 784
PsrI GAACNNNNNNTAC 2 cut(s) 909, 941
RsaI GTAC 2 cut(s) 643, 649
RsaNI GTAC 2 cut(s) 642, 648
RseI CAYNNNNRTG 1 cut(s) 1068
SapI GCTCTTC 1 cut(s) 462
SaqAI TTAA 6 cut(s) 96, 374, 429, 996, 1140, 1227
SatI GCNGC 2 cut(s) 1185, 1221
Sau3AI GATC 4 cut(s) 133, 213, 601, 1018
Sau96I GGNCC 4 cut(s) 117, 340, 750, 784
ScaI AGTACT 1 cut(s) 649
ScrFI CCNGG 1 cut(s) 260
SfaNI GCATC 6 cut(s) 355, 662, 750, 874, 1014, 1129
Sfr274I CTCGAG 1 cut(s) 846
SinI GGWCC 3 cut(s) 117, 340, 784
SlaI CTCGAG 1 cut(s) 846
SmiMI CAYNNNNRTG 1 cut(s) 1068
SmlI CTYRAG 1 cut(s) 846
SmoI CTYRAG 1 cut(s) 846
SpeI ACTAGT 1 cut(s) 644
Sse9I AATT 6 cut(s) 430, 765, 789, 1031, 1137, 1224
SsiI CCGC 4 cut(s) 130, 472, 1185, 1221
SspMI CTAG 3 cut(s) 548, 645, 713
StyD4I CCNGG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 1022
TaaI ACNGT 9 cut(s) 51, 514, 614, 736, 880, 923, 1173, 1191, 1209
TaiI ACGT 2 cut(s) 687, 813
TaqI TCGA 5 cut(s) 216, 288, 807, 847, 938
TasI AATT 6 cut(s) 430, 765, 789, 1031, 1137, 1224
TatI WGTACW 1 cut(s) 647
TauI GCSGC 2 cut(s) 1187, 1223
TfiI GAWTC 1 cut(s) 389
Tru1I TTAA 6 cut(s) 96, 374, 429, 996, 1140, 1227
Tru9I TTAA 6 cut(s) 96, 374, 429, 996, 1140, 1227
TscAI CASTG 3 cut(s) 764, 1176, 1194
TspDTI ATGAA 9 cut(s) 19, 360, 788, 870, 1044, 1165, 1183, 1187, 1201
TspGWI ACGGA 1 cut(s) 861
TspRI CASTG 3 cut(s) 764, 1176, 1194
VpaK11BI GGWCC 3 cut(s) 117, 340, 784
XbaI TCTAGA 1 cut(s) 712
XhoI CTCGAG 1 cut(s) 846
XmiI GTMKAC 2 cut(s) 875, 918
XspI CTAG 3 cut(s) 548, 645, 713
ZraI GACGTC 1 cut(s) 685
ZrmI AGTACT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.