Rh2BG407400

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000289
Physical Location & Seq
Reverse (-)
57715902 .. 57725045
9144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG407400.1

Sequence Viewer

Length: 840 bp
ATGGTGAGTATCAATGGCTTAATCTGTGTTTATCGTCTTCATCATCGTGCATCTACTGAGCTGGACAAGCCCGTTATATTTAACCTCTGCACCCGAGAGTCCATCACTCTTCCCCATGCCTTAAATACTAGCCGGAGCCACTACTTGGTTCATTCGACTTGGATTGGGTTCAGTCCTCAGACAAACGAGAATAAGGTTCTCCAAGTACTAGTGCGGCACCATCACACCAACGAAAGCAGTTTCATATTCAAGATTTTCACTCTTGGTGGTACAAGTAGTTCATGGAGGCATCTAGAGATAGAAGACAAAGACTTCGATGATCTTGCTCTTGATTATCAAAATTTACTGTTTCACCAGAGATCTGTGTTCCTCCACGGGGCCAGACATTGGCTGGAAACGAATATTAAGGATGAACTTGTTATATTGGTTTTTGACTTTGAACAAGAGCGATTCAGAGTAATCCCATTGCCTCAAGAATATCATAAAGATCGCGTTGGTGCTTCTCCTTTTGTGGAAATGATTGAAGTGAATGAATGTGTTGCAATAAATGATCCCGACTTCTCATCTGAAGGAAATGTTATAAGTTTATGGATTTTGAAGGATTACCAACATCTGGTGTGGGTTAAAGAGAGTATCATCTTTCCCACTAAATGGAAGAAGATGGGATTCCCTATTCCTAGGTGCTCAATCTACACAGGCGAGCTCCTGCTTAGAGGGCCATGTGGTACATGCGAGAGGCCTGACTCTGAGTATCTTTTAGGTTTCCACTTGGCTTCCATGGAGCAGAGCCTGACCTTGTTCTCCAAGTGGGTGACCTCTTCTTCAGGGCTCACAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

279

Amino Acids

32.35

Weight (kDa)

6.19

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 2 - 222 2e-23 F-box associated beta propeller domain
FBA_1 PF07734 21 - 204 8e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 581
AccB1I GGYRCC 1 cut(s) 216
AccB7I CCANNNNNTGG 4 cut(s) 145, 387, 613, 651
AccII CGCG 1 cut(s) 492
AciI CCGC 1 cut(s) 214
AclWI GGATC 1 cut(s) 545
AcsI RAATTY 1 cut(s) 340
AcuI CTGAAG 2 cut(s) 588, 807
AfaI GTAC 3 cut(s) 207, 271, 727
AfiI CCNNNNNNNGG 5 cut(s) 145, 376, 387, 613, 651
AgsI TTSAA 4 cut(s) 250, 440, 524, 598
AhlI ACTAGT 1 cut(s) 208
AluBI AGCT 2 cut(s) 61, 703
AluI AGCT 2 cut(s) 61, 703
Alw21I GWGCWC 2 cut(s) 686, 705
AlwI GGATC 1 cut(s) 545
AlwNI CAGNNNCTG 1 cut(s) 790
Ama87I CYCGRG 1 cut(s) 93
AoxI GGCC 3 cut(s) 378, 716, 737
ApoI RAATTY 1 cut(s) 340
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
AspA2I CCTAGG 1 cut(s) 677
AspS9I GGNCC 2 cut(s) 378, 716
AsuHPI GGTGA 3 cut(s) 16, 344, 823
AvaI CYCGRG 1 cut(s) 93
AvrII CCTAGG 1 cut(s) 677
BanI GGYRCC 1 cut(s) 216
BanII GRGCYC 2 cut(s) 705, 831
BbsI GAAGAC 2 cut(s) 29, 309
Bbv12I GWGCWC 2 cut(s) 686, 705
BccI CCATC 3 cut(s) 110, 228, 655
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BcuI ACTAGT 1 cut(s) 208
BfaI CTAG 4 cut(s) 129, 209, 293, 678
BglII AGATCT 1 cut(s) 359
BisI GCNGC 1 cut(s) 215
BlnI CCTAGG 1 cut(s) 677
BlsI GCNGC 1 cut(s) 216
BmcAI AGTACT 1 cut(s) 207
BmeT110I CYCGRG 1 cut(s) 93
BmgT120I GGNCC 2 cut(s) 378, 716
BmiI GGNNCC 3 cut(s) 137, 218, 379
BmsI GCATC 2 cut(s) 59, 298
BpiI GAAGAC 2 cut(s) 29, 309
BpuEI CTTGAG 1 cut(s) 456
BsaJI CCNNGG 3 cut(s) 373, 677, 777
Bsc4I CCNNNNNNNGG 5 cut(s) 145, 376, 387, 613, 651
Bse3DI GCAATG 1 cut(s) 464
BseDI CCNNGG 3 cut(s) 373, 677, 777
BseGI GGATG 1 cut(s) 415
BseLI CCNNNNNNNGG 5 cut(s) 145, 376, 387, 613, 651
BseMI GCAATG 1 cut(s) 464
BseMII CTCAG 3 cut(s) 48, 191, 738
BsgI GTGCAG 1 cut(s) 73
Bsh1236I CGCG 1 cut(s) 492
BshFI GGCC 3 cut(s) 380, 718, 739
BshNI GGYRCC 1 cut(s) 216
BsiHKAI GWGCWC 2 cut(s) 686, 705
BsiHKCI CYCGRG 1 cut(s) 93
BsiSI CCGG 1 cut(s) 133
BslI CCNNNNNNNGG 5 cut(s) 145, 376, 387, 613, 651
BsnI GGCC 3 cut(s) 380, 718, 739
BsoBI CYCGRG 1 cut(s) 93
Bsp1286I GDGCHC 3 cut(s) 686, 705, 831
Bsp143I GATC 4 cut(s) 319, 359, 487, 550
Bsp19I CCATGG 1 cut(s) 777
BspACI CCGC 1 cut(s) 214
BspANI GGCC 3 cut(s) 380, 718, 739
BspCNI CTCAG 3 cut(s) 49, 190, 739
BspFNI CGCG 1 cut(s) 492
BspLI GGNNCC 3 cut(s) 137, 218, 379
BspPI GGATC 1 cut(s) 545
BspT107I GGYRCC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 464
BssECI CCNNGG 3 cut(s) 373, 677, 777
BssMI GATC 4 cut(s) 319, 359, 487, 550
BssT1I CCWWGG 2 cut(s) 677, 777
Bst4CI ACNGT 1 cut(s) 348
Bst6I CTCTTC 2 cut(s) 114, 823
BstC8I GCNNGC 1 cut(s) 701
BstDEI CTNAG 4 cut(s) 57, 177, 710, 747
BstDSI CCRYGG 2 cut(s) 373, 777
BstEII GGTNACC 1 cut(s) 811
BstF5I GGATG 1 cut(s) 415
BstFNI CGCG 1 cut(s) 492
BstKTI GATC 4 cut(s) 322, 362, 490, 553
BstMBI GATC 4 cut(s) 319, 359, 487, 550
BstMWI GCNNNNNNNGC 2 cut(s) 67, 715
BstNSI RCATGY 1 cut(s) 732
BstPI GGTNACC 1 cut(s) 811
BstUI CGCG 1 cut(s) 492
BstV2I GAAGAC 2 cut(s) 29, 309
BstX2I RGATCY 1 cut(s) 359
BstYI RGATCY 1 cut(s) 359
BsuRI GGCC 3 cut(s) 380, 718, 739
BtgI CCRYGG 2 cut(s) 373, 777
BtsCI GGATG 1 cut(s) 415
Cac8I GCNNGC 1 cut(s) 701
CaiI CAGNNNCTG 1 cut(s) 790
Cfr13I GGNCC 2 cut(s) 378, 716
Csp6I GTAC 3 cut(s) 206, 270, 726
CviAII CATG 5 cut(s) 116, 282, 720, 729, 778
CviQI GTAC 3 cut(s) 206, 270, 726
DdeI CTNAG 4 cut(s) 57, 177, 710, 747
DpnI GATC 4 cut(s) 321, 361, 489, 552
DpnII GATC 4 cut(s) 319, 359, 487, 550
Eam1104I CTCTTC 2 cut(s) 114, 823
EarI CTCTTC 2 cut(s) 114, 823
Ecl136II GAGCTC 1 cut(s) 703
Eco130I CCWWGG 2 cut(s) 677, 777
Eco147I AGGCCT 1 cut(s) 739
Eco24I GRGCYC 2 cut(s) 705, 831
Eco53kI GAGCTC 1 cut(s) 703
Eco57I CTGAAG 2 cut(s) 588, 807
Eco88I CYCGRG 1 cut(s) 93
Eco91I GGTNACC 1 cut(s) 811
EcoICRI GAGCTC 1 cut(s) 703
EcoO65I GGTNACC 1 cut(s) 811
EcoT14I CCWWGG 2 cut(s) 677, 777
EcoT38I GRGCYC 2 cut(s) 705, 831
ErhI CCWWGG 2 cut(s) 677, 777
FaeI CATG 5 cut(s) 119, 285, 723, 732, 781
FatI CATG 5 cut(s) 115, 281, 719, 728, 777
Fnu4HI GCNGC 1 cut(s) 215
FokI GGATG 1 cut(s) 422
FriOI GRGCYC 2 cut(s) 705, 831
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 4 cut(s) 129, 209, 293, 678
GluI GCNGC 1 cut(s) 215
HaeIII GGCC 3 cut(s) 380, 718, 739
HapII CCGG 1 cut(s) 133
Hin1II CATG 5 cut(s) 119, 285, 723, 732, 781
HinfI GANTC 4 cut(s) 98, 450, 666, 743
HpaII CCGG 1 cut(s) 133
HphI GGTGA 3 cut(s) 16, 344, 823
Hpy188I TCNGA 4 cut(s) 180, 455, 568, 748
Hpy188III TCNNGA 5 cut(s) 250, 293, 329, 473, 554
HpyAV CCTTC 2 cut(s) 563, 592
HpyCH4III ACNGT 1 cut(s) 348
HpyCH4V TGCA 3 cut(s) 50, 90, 542
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 715
HpyF3I CTNAG 4 cut(s) 57, 177, 710, 747
Hsp92II CATG 5 cut(s) 119, 285, 723, 732, 781
Kzo9I GATC 4 cut(s) 319, 359, 487, 550
LmnI GCTCC 3 cut(s) 135, 708, 781
LweI GCATC 2 cut(s) 59, 298
MaeI CTAG 4 cut(s) 129, 209, 293, 678
MaeIII GTNAC 1 cut(s) 811
MalI GATC 4 cut(s) 321, 361, 489, 552
MboI GATC 4 cut(s) 319, 359, 487, 550
MboII GAAGA 7 cut(s) 29, 101, 314, 667, 670, 810, 813
MflI RGATCY 1 cut(s) 359
MhlI GDGCHC 3 cut(s) 686, 705, 831
MluCI AATT 1 cut(s) 340
MlyI GAGTC 2 cut(s) 107, 737
MnlI CCTC 8 cut(s) 95, 186, 279, 380, 480, 707, 729, 826
MseI TTAA 5 cut(s) 20, 81, 122, 405, 624
MslI CAYNNNNRTG 1 cut(s) 45
MspI CCGG 1 cut(s) 133
MvnI CGCG 1 cut(s) 492
MwoI GCNNNNNNNGC 2 cut(s) 67, 715
NcoI CCATGG 1 cut(s) 777
NdeII GATC 4 cut(s) 319, 359, 487, 550
NlaIII CATG 5 cut(s) 119, 285, 723, 732, 781
NlaIV GGNNCC 3 cut(s) 137, 218, 379
NmuCI GTSAC 1 cut(s) 811
NspI RCATGY 1 cut(s) 732
PceI AGGCCT 1 cut(s) 739
PfeI GAWTC 2 cut(s) 450, 666
PflMI CCANNNNNTGG 4 cut(s) 145, 387, 613, 651
PkrI GCNGC 1 cut(s) 216
PleI GAGTC 2 cut(s) 106, 737
PpsI GAGTC 2 cut(s) 106, 737
PsiI TTATAA 1 cut(s) 581
Psp124BI GAGCTC 1 cut(s) 705
PspEI GGTNACC 1 cut(s) 811
PspN4I GGNNCC 3 cut(s) 137, 218, 379
PspPI GGNCC 2 cut(s) 378, 716
PsrI GAACNNNNNNTAC 2 cut(s) 262, 294
PstNI CAGNNNCTG 1 cut(s) 790
PsuI RGATCY 1 cut(s) 359
RsaI GTAC 3 cut(s) 207, 271, 727
RsaNI GTAC 3 cut(s) 206, 270, 726
RseI CAYNNNNRTG 1 cut(s) 45
SacI GAGCTC 1 cut(s) 705
SaqAI TTAA 5 cut(s) 20, 81, 122, 405, 624
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 4 cut(s) 319, 359, 487, 550
Sau96I GGNCC 2 cut(s) 378, 716
ScaI AGTACT 1 cut(s) 207
SchI GAGTC 2 cut(s) 107, 737
SduI GDGCHC 3 cut(s) 686, 705, 831
SetI ASST 9 cut(s) 63, 87, 198, 683, 705, 763, 797, 818, 839
SfaNI GCATC 2 cut(s) 59, 298
SmiMI CAYNNNNRTG 1 cut(s) 45
SmlI CTYRAG 1 cut(s) 471
SmoI CTYRAG 1 cut(s) 471
SpeI ACTAGT 1 cut(s) 208
Sse9I AATT 1 cut(s) 340
SseBI AGGCCT 1 cut(s) 739
SsiI CCGC 1 cut(s) 214
SspI AATATT 1 cut(s) 403
SspMI CTAG 4 cut(s) 129, 209, 293, 678
SstI GAGCTC 1 cut(s) 705
StuI AGGCCT 1 cut(s) 739
StyI CCWWGG 2 cut(s) 677, 777
TaaI ACNGT 1 cut(s) 348
TaqI TCGA 2 cut(s) 155, 315
TasI AATT 1 cut(s) 340
TatI WGTACW 1 cut(s) 205
TauI GCSGC 1 cut(s) 217
TfiI GAWTC 2 cut(s) 450, 666
Tru1I TTAA 5 cut(s) 20, 81, 122, 405, 624
Tru9I TTAA 5 cut(s) 20, 81, 122, 405, 624
TseFI GTSAC 1 cut(s) 811
Tsp45I GTSAC 1 cut(s) 811
TspDTI ATGAA 6 cut(s) 29, 140, 232, 270, 426, 546
Van91I CCANNNNNTGG 4 cut(s) 145, 387, 613, 651
XapI RAATTY 1 cut(s) 340
XbaI TCTAGA 1 cut(s) 292
XceI RCATGY 1 cut(s) 732
XcmI CCANNNNNNNNNTGG 1 cut(s) 388
XmaJI CCTAGG 1 cut(s) 677
XspI CTAG 4 cut(s) 129, 209, 293, 678
ZrmI AGTACT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.