Rmu_sc0001426.1_g000004

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001426.1
OG0000289
Physical Location & Seq
Reverse (-)
6805 .. 7950
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001426.1_g000004.1.cds

Sequence Viewer

Length: 1146 bp
atggaaagagttgatgatgattcaaagctgccaagggaaatcatatgctcggacatactcccaaggctaccgcgagagtctttgatgcgctttcggtgcgtttgcaagtcatggaaaactctcctcaccgccaaccctgtatttcggagcatccatctaaacttccaccctcacaacagtactactcacctccttctagacgcttacggctcatcagaccccttcgtaatccgaaagcactaccttctcctcgtcaaaaccagccaagaaggaactgctccatcacatgtcactgaccttgtgacactgccggattcattcatcaacgtgcgatatgctaatggcttggtattaggctactttggtcggaatgatcccgtttatatatttaatcccttcacccgagagtctattattgttccctctcctactccacctgtcgaccattatttagacctgtatttcgggttcagtcctagtacaaacgagtataaggttgtcctgatggcaacccaaaagatttatattgaaggtttagtagagtttaagattttcacactgggtaaaggttcgtggagtgacattgtcgtagactgggatcagctgtcatttgttcctcttggaccttggaacttctccgatactcaaaatgtatgtgtccatggggccatacactggttcgctagtcgttatgaggctatattagctcttgacattggagaggagaggttcaaaatcatacgagtgcctagtgaagttgaagaagtatggagaattattgaagtggatggatgtctatgtatagtatcatcaagacgtttctggaacatggatgtgatgttgtggattttgaaggactacgaacatcaagtgtgggttaaggtgctcgtcgcccgtagccctccggaatatcctgcttctgacttgcctctggaataccgtgcttctgacttgcctctatgtaccatccacacaggtgagctcttatttgatgttcgtgaagacaagtatctccaattatatgacatgaaaagtgaaaagtatcggaggagtgaaatcatttttcccaaaatgttgtgtgatcctgtattcagatcgaattatatctctactagttttgatgattgtattattcccttaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

381

Amino Acids

44.23

Weight (kDa)

5.69

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 675
AccI GTMKAC 2 cut(s) 441, 591
AccII CGCG 1 cut(s) 73
AccIII TCCGGA 1 cut(s) 904
AciI CCGC 2 cut(s) 71, 129
AclWI GGATC 3 cut(s) 368, 606, 1076
AfaI GTAC 3 cut(s) 181, 481, 964
AfiI CCNNNNNNNGG 1 cut(s) 675
AflIII ACRYGT 1 cut(s) 286
AgsI TTSAA 6 cut(s) 24, 530, 733, 761, 782, 853
AhlI ACTAGT 1 cut(s) 1112
AleI CACNNNNGTG 1 cut(s) 975
AluBI AGCT 4 cut(s) 28, 604, 707, 982
AluI AGCT 4 cut(s) 28, 604, 707, 982
Alw21I GWGCWC 2 cut(s) 888, 984
AlwI GGATC 3 cut(s) 368, 606, 1076
Ama87I CYCGRG 1 cut(s) 402
Aor13HI TCCGGA 1 cut(s) 904
AoxI GGCC 1 cut(s) 666
ApeKI GCWGC 1 cut(s) 28
ArsI GACNNNNNNTTYG 2 cut(s) 446, 478
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 2 cut(s) 623, 666
AsuHPI GGTGA 4 cut(s) 118, 179, 391, 989
AvaI CYCGRG 1 cut(s) 402
AvaII GGWCC 1 cut(s) 623
BanII GRGCYC 1 cut(s) 984
BbsI GAAGAC 1 cut(s) 1008
Bbv12I GWGCWC 2 cut(s) 888, 984
BbvI GCAGC 1 cut(s) 15
BccI CCATC 5 cut(s) 162, 289, 499, 782, 974
BceAI ACGGC 1 cut(s) 223
BcuI ACTAGT 1 cut(s) 1112
BfaI CTAG 5 cut(s) 197, 477, 684, 750, 1113
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
BmcAI AGTACT 1 cut(s) 181
Bme18I GGWCC 1 cut(s) 623
BmeT110I CYCGRG 1 cut(s) 402
BmgT120I GGNCC 2 cut(s) 623, 666
BmiI GGNNCC 1 cut(s) 667
BmrI ACTGGG 2 cut(s) 569, 604
BmsI GCATC 2 cut(s) 75, 159
BmuI ACTGGG 2 cut(s) 569, 604
BpiI GAAGAC 1 cut(s) 1008
BsaJI CCNNGG 4 cut(s) 32, 62, 626, 661
BsaWI WCCGGW 1 cut(s) 904
Bsc4I CCNNNNNNNGG 1 cut(s) 675
Bse1I ACTGG 3 cut(s) 564, 599, 680
BseAI TCCGGA 1 cut(s) 904
BseDI CCNNGG 4 cut(s) 32, 62, 626, 661
BseGI GGATG 5 cut(s) 150, 793, 797, 838, 966
BseLI CCNNNNNNNGG 1 cut(s) 675
BseNI ACTGG 3 cut(s) 564, 599, 680
BseRI GAGGAG 4 cut(s) 113, 239, 737, 1063
BseXI GCAGC 1 cut(s) 15
Bsh1236I CGCG 1 cut(s) 73
BshFI GGCC 1 cut(s) 668
BsiHKAI GWGCWC 2 cut(s) 888, 984
BsiHKCI CYCGRG 1 cut(s) 402
BsiSI CCGG 2 cut(s) 311, 905
BslI CCNNNNNNNGG 1 cut(s) 675
BsnI GGCC 1 cut(s) 668
BsoBI CYCGRG 1 cut(s) 402
Bsp1286I GDGCHC 2 cut(s) 888, 984
Bsp13I TCCGGA 1 cut(s) 904
Bsp143I GATC 4 cut(s) 373, 598, 1081, 1094
Bsp19I CCATGG 1 cut(s) 661
BspACI CCGC 2 cut(s) 71, 129
BspANI GGCC 1 cut(s) 668
BspEI TCCGGA 1 cut(s) 904
BspFNI CGCG 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 667
BspPI GGATC 3 cut(s) 368, 606, 1076
BsrI ACTGG 3 cut(s) 564, 599, 680
BssECI CCNNGG 4 cut(s) 32, 62, 626, 661
BssMI GATC 4 cut(s) 373, 598, 1081, 1094
BssT1I CCWWGG 4 cut(s) 32, 62, 626, 661
Bst4CI ACNGT 2 cut(s) 179, 941
BstDSI CCRYGG 1 cut(s) 661
BstF5I GGATG 5 cut(s) 150, 793, 797, 838, 966
BstFNI CGCG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 4 cut(s) 376, 601, 1084, 1097
BstMBI GATC 4 cut(s) 373, 598, 1081, 1094
BstMWI GCNNNNNNNGC 2 cut(s) 96, 704
BstNSI RCATGY 1 cut(s) 290
BstUI CGCG 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 15
BstV2I GAAGAC 1 cut(s) 1008
BsuRI GGCC 1 cut(s) 668
BtgI CCRYGG 1 cut(s) 661
BtsCI GGATG 5 cut(s) 150, 793, 797, 838, 966
BtsI GCAGTG 1 cut(s) 305
BtsIMutI CAGTG 4 cut(s) 291, 305, 557, 673
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 623, 666
CseI GACGC 1 cut(s) 209
Csp6I GTAC 3 cut(s) 180, 480, 963
CviAII CATG 5 cut(s) 111, 287, 662, 829, 1027
CviQI GTAC 3 cut(s) 180, 480, 963
DpnI GATC 4 cut(s) 375, 600, 1083, 1096
DpnII GATC 4 cut(s) 373, 598, 1081, 1094
Ecl136II GAGCTC 1 cut(s) 982
Eco130I CCWWGG 4 cut(s) 32, 62, 626, 661
Eco24I GRGCYC 1 cut(s) 984
Eco47I GGWCC 1 cut(s) 623
Eco53kI GAGCTC 1 cut(s) 982
Eco88I CYCGRG 1 cut(s) 402
EcoICRI GAGCTC 1 cut(s) 982
EcoT14I CCWWGG 4 cut(s) 32, 62, 626, 661
EcoT38I GRGCYC 1 cut(s) 984
ErhI CCWWGG 4 cut(s) 32, 62, 626, 661
FaeI CATG 5 cut(s) 114, 290, 665, 832, 1030
FatI CATG 5 cut(s) 110, 286, 661, 828, 1026
FauNDI CATATG 1 cut(s) 44
FblI GTMKAC 2 cut(s) 441, 591
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 5 cut(s) 137, 800, 804, 845, 953
FriOI GRGCYC 1 cut(s) 984
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 5 cut(s) 197, 477, 684, 750, 1113
GlaI GCGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 29
HaeIII GGCC 1 cut(s) 668
HapII CCGG 2 cut(s) 311, 905
HgaI GACGC 1 cut(s) 209
HhaI GCGC 1 cut(s) 90
Hin1II CATG 5 cut(s) 114, 290, 665, 832, 1030
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HinfI GANTC 4 cut(s) 20, 77, 314, 407
HpaII CCGG 2 cut(s) 311, 905
HphI GGTGA 4 cut(s) 118, 179, 391, 989
Hpy166II GTNNAC 2 cut(s) 442, 592
Hpy188III TCNNGA 8 cut(s) 197, 502, 710, 813, 823, 905, 932, 998
Hpy8I GTNNAC 2 cut(s) 442, 592
Hpy99I CGWCG 1 cut(s) 893
HpyAV CCTTC 7 cut(s) 203, 232, 254, 263, 406, 524, 847
HpyCH4III ACNGT 2 cut(s) 179, 941
HpyCH4IV ACGT 2 cut(s) 327, 817
HpyCH4V TGCA 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 704
HpySE526I ACGT 2 cut(s) 327, 817
Hsp92II CATG 5 cut(s) 114, 290, 665, 832, 1030
HspAI GCGC 1 cut(s) 88
Kpn2I TCCGGA 1 cut(s) 904
Kzo9I GATC 4 cut(s) 373, 598, 1081, 1094
LmnI GCTCC 2 cut(s) 147, 283
Lsp1109I GCAGC 1 cut(s) 15
LweI GCATC 2 cut(s) 75, 159
MaeI CTAG 5 cut(s) 197, 477, 684, 750, 1113
MaeII ACGT 2 cut(s) 327, 817
MaeIII GTNAC 3 cut(s) 289, 301, 578
MalI GATC 4 cut(s) 375, 600, 1083, 1096
MboI GATC 4 cut(s) 373, 598, 1081, 1094
MboII GAAGA 2 cut(s) 773, 1013
MhlI GDGCHC 2 cut(s) 888, 984
MluCI AATT 3 cut(s) 774, 1016, 1099
MlyI GAGTC 2 cut(s) 86, 416
MmeI TCCRAC 1 cut(s) 347
MroI TCCGGA 1 cut(s) 904
MseI TTAA 4 cut(s) 390, 546, 879, 1139
MslI CAYNNNNRTG 4 cut(s) 326, 743, 833, 975
MspA1I CMGCKG 1 cut(s) 604
MspI CCGG 2 cut(s) 311, 905
MvnI CGCG 1 cut(s) 73
MwoI GCNNNNNNNGC 2 cut(s) 96, 704
NcoI CCATGG 1 cut(s) 661
NdeI CATATG 1 cut(s) 44
NdeII GATC 4 cut(s) 373, 598, 1081, 1094
NlaIII CATG 5 cut(s) 114, 290, 665, 832, 1030
NlaIV GGNNCC 1 cut(s) 667
NmuCI GTSAC 3 cut(s) 289, 301, 578
NspI RCATGY 1 cut(s) 290
OliI CACNNNNGTG 1 cut(s) 975
PciI ACATGT 1 cut(s) 286
PfeI GAWTC 2 cut(s) 20, 314
PflFI GACNNNGTC 1 cut(s) 584
PflMI CCANNNNNTGG 1 cut(s) 675
PkrI GCNGC 1 cut(s) 30
PleI GAGTC 2 cut(s) 85, 415
PpsI GAGTC 2 cut(s) 85, 415
PscI ACATGT 1 cut(s) 286
Psp124BI GAGCTC 1 cut(s) 984
PspN4I GGNNCC 1 cut(s) 667
PspPI GGNCC 2 cut(s) 623, 666
PsrI GAACNNNNNNTAC 2 cut(s) 452, 484
PsyI GACNNNGTC 1 cut(s) 584
PvuII CAGCTG 1 cut(s) 604
RsaI GTAC 3 cut(s) 181, 481, 964
RsaNI GTAC 3 cut(s) 180, 480, 963
RseI CAYNNNNRTG 4 cut(s) 326, 743, 833, 975
SacI GAGCTC 1 cut(s) 984
SalI GTCGAC 1 cut(s) 440
SaqAI TTAA 4 cut(s) 390, 546, 879, 1139
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 4 cut(s) 373, 598, 1081, 1094
Sau96I GGNCC 2 cut(s) 623, 666
ScaI AGTACT 1 cut(s) 181
SchI GAGTC 2 cut(s) 86, 416
SduI GDGCHC 2 cut(s) 888, 984
SfaNI GCATC 2 cut(s) 75, 159
SinI GGWCC 1 cut(s) 623
SmiMI CAYNNNNRTG 4 cut(s) 326, 743, 833, 975
SpeI ACTAGT 1 cut(s) 1112
Sse9I AATT 3 cut(s) 774, 1016, 1099
SsiI CCGC 2 cut(s) 71, 129
SspMI CTAG 5 cut(s) 197, 477, 684, 750, 1113
SstI GAGCTC 1 cut(s) 984
StyI CCWWGG 4 cut(s) 32, 62, 626, 661
TaaI ACNGT 2 cut(s) 179, 941
TaiI ACGT 2 cut(s) 330, 820
TaqI TCGA 2 cut(s) 441, 1097
TasI AATT 3 cut(s) 774, 1016, 1099
TatI WGTACW 2 cut(s) 179, 479
TfiI GAWTC 2 cut(s) 20, 314
Tru1I TTAA 4 cut(s) 390, 546, 879, 1139
Tru9I TTAA 4 cut(s) 390, 546, 879, 1139
TscAI CASTG 4 cut(s) 298, 312, 564, 680
TseFI GTSAC 3 cut(s) 289, 301, 578
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 3 cut(s) 289, 301, 578
TspDTI ATGAA 3 cut(s) 306, 310, 1043
TspRI CASTG 4 cut(s) 298, 312, 564, 680
Tth111I GACNNNGTC 1 cut(s) 584
Van91I CCANNNNNTGG 1 cut(s) 675
VpaK11BI GGWCC 1 cut(s) 623
XbaI TCTAGA 1 cut(s) 196
XceI RCATGY 1 cut(s) 290
XmiI GTMKAC 2 cut(s) 441, 591
XspI CTAG 5 cut(s) 197, 477, 684, 750, 1113
ZrmI AGTACT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.