Rroxscaffold_4G00324760

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000289
Physical Location & Seq
Forward (+)
56412561 .. 56413707
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00324760.1

Sequence Viewer

Length: 963 bp
ATGGAAGTTGAACCTGATGTTGCAAAGTTCATCCCAAGCGACATCATACTGTCTCATATCCTCCCCAAGCTACCTGACAAGTCCCTGATGAGGTTTAAGTGCGTCTGCAAATCTTGGTCCTCTCTCATCCGCGATCTTTTCTTTCTCAGGGTATATGGGAACTTGCACAACAGCCCCACTACTCACCTCATCGTCTTCTTCTGGCAACACGAGATCGAACCCAAAAGACCAAAACGCTTTCTCTCCATGCAAATCAACCAGGAAGGGATTTGTCCTACACCTCCCATCGACCTGCTTGTAACTCTAAGCAACAATCCACATTTGTCATCCTTTTCACGGGAGCATGTATGCCATGCCATCGCCGATACTGGCTTAATCTGTCTTTTTGATTCCACGTGTGAGGATGACGCTTCCCCAGCTTATGTCTTTAATTCCAACACCCGAGAGTTTATTGCTCTTCCAGACACTGTGCGGGATAAATCAGCCCGTCCAAAGTCTCCAAACTACGAGACAGTCAGTTATGCTTATTGTATCGGGTTCACTCCTCTTGCTAACGAGTATAAGGTTCTCCAAGTGAAACATTGTTTGTTTTTCAATCCGGATCGGCAAAACAGTATCATGTTCAAGATTTTCACTCTGGGTACAAGTACTGCATCATGGAGGGATGTAGAAGTAGAGATAGACGTCCTTGATTACTTAGCTCTATTTGAAGTGAATGGATGGGTGGCTGTATATATTGCTCCGGAGTTGTTGAATGCAAGGGTCATGGACTTGTGGATTTTGAAGGATTACCAAAATCAGGTGTGGGTTAAGGAGAGCGTCATCTTTCCCGAACCATGGGATGAATTGGGAATGCCTCTTCCTGTTTGCTCAATCCACACAGGTGAACTCCTGCTTCAGCAGAGCGACAACTCAGCTCCTTCTCACTCCTTGCATCTTTACGATATGAGACTTAAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

320

Amino Acids

36.74

Weight (kDa)

5.54

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 117 - 227 8.9e-11 F-box associated beta propeller domain
FBA_3 PF08268 232 - 316 2.1e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 687
Acc36I ACCTGC 1 cut(s) 300
AccII CGCG 1 cut(s) 132
AccIII TCCGGA 2 cut(s) 598, 742
AciI CCGC 2 cut(s) 130, 472
AclWI GGATC 1 cut(s) 609
AcuI CTGAAG 1 cut(s) 881
AcvI CACGTG 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 684
AfaI GTAC 2 cut(s) 643, 649
AfiI CCNNNNNNNGG 4 cut(s) 90, 336, 799, 837
AflIII ACRYGT 1 cut(s) 395
AgsI TTSAA 6 cut(s) 11, 595, 625, 710, 754, 784
AjnI CCWGG 1 cut(s) 258
AleI CACNNNNGTG 1 cut(s) 882
AluBI AGCT 4 cut(s) 70, 419, 701, 917
AluI AGCT 4 cut(s) 70, 419, 701, 917
Alw26I GTCTC 4 cut(s) 57, 501, 503, 943
AlwI GGATC 1 cut(s) 609
AlwNI CAGNNNCTG 1 cut(s) 467
Ama87I CYCGRG 1 cut(s) 441
Aor13HI TCCGGA 2 cut(s) 598, 742
AspS9I GGNCC 1 cut(s) 117
AsuHPI GGTGA 2 cut(s) 176, 896
AvaI CYCGRG 1 cut(s) 441
AvaII GGWCC 1 cut(s) 117
BauI CACGAG 1 cut(s) 209
BbrPI CACGTG 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 187
BccI CCATC 3 cut(s) 293, 365, 714
BciT130I CCWGG 1 cut(s) 260
BcoDI GTCTC 4 cut(s) 57, 501, 503, 943
BfuAI ACCTGC 1 cut(s) 300
BmcAI AGTACT 1 cut(s) 649
Bme1390I CCNGG 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 441
BmgT120I GGNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 2 cut(s) 662, 943
BpiI GAAGAC 1 cut(s) 187
BsaAI YACGTR 1 cut(s) 396
BsaHI GRCGYC 1 cut(s) 684
BsaJI CCNNGG 1 cut(s) 836
BsaWI WCCGGW 2 cut(s) 598, 742
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 336, 799, 837
Bse1I ACTGG 1 cut(s) 373
BseAI TCCGGA 2 cut(s) 598, 742
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 836
BseGI GGATG 7 cut(s) 30, 126, 326, 409, 670, 725, 847
BseLI CCNNNNNNNGG 4 cut(s) 90, 336, 799, 837
BseMII CTCAG 2 cut(s) 160, 927
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 1 cut(s) 534
BseYI CCCAGC 1 cut(s) 415
Bsh1236I CGCG 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 441
BsiSI CCGG 2 cut(s) 599, 743
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 4 cut(s) 90, 336, 799, 837
BsmAI GTCTC 4 cut(s) 57, 501, 503, 943
BsmFI GGGAC 1 cut(s) 67
BsmI GAATGC 2 cut(s) 760, 858
BsoBI CYCGRG 1 cut(s) 441
Bsp13I TCCGGA 2 cut(s) 598, 742
Bsp143I GATC 3 cut(s) 133, 213, 601
Bsp19I CCATGG 1 cut(s) 836
BspACI CCGC 2 cut(s) 130, 472
BspCNI CTCAG 2 cut(s) 159, 926
BspEI TCCGGA 2 cut(s) 598, 742
BspFNI CGCG 1 cut(s) 132
BspMI ACCTGC 1 cut(s) 300
BspPI GGATC 1 cut(s) 609
BspQI GCTCTTC 1 cut(s) 462
BsrI ACTGG 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 836
BssMI GATC 3 cut(s) 133, 213, 601
BssNI GRCGYC 1 cut(s) 684
BssSI CACGAG 1 cut(s) 209
BssT1I CCWWGG 1 cut(s) 836
Bst2BI CACGAG 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 4 cut(s) 51, 469, 514, 614
Bst6I CTCTTC 2 cut(s) 462, 864
BstACI GRCGYC 1 cut(s) 684
BstBAI YACGTR 1 cut(s) 396
BstDEI CTNAG 4 cut(s) 146, 305, 697, 913
BstDSI CCRYGG 1 cut(s) 836
BstF5I GGATG 7 cut(s) 30, 126, 326, 409, 670, 725, 847
BstFNI CGCG 1 cut(s) 132
BstKTI GATC 3 cut(s) 136, 216, 604
BstMAI GTCTC 4 cut(s) 57, 501, 503, 943
BstMBI GATC 3 cut(s) 133, 213, 601
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstNI CCWGG 1 cut(s) 260
BstNSI RCATGY 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 258
BstUI CGCG 1 cut(s) 132
BstV2I GAAGAC 1 cut(s) 187
BtgI CCRYGG 1 cut(s) 836
BtgZI GCGATG 1 cut(s) 343
BtsCI GGATG 7 cut(s) 30, 126, 326, 409, 670, 725, 847
BtsIMutI CAGTG 1 cut(s) 465
BveI ACCTGC 1 cut(s) 300
CaiI CAGNNNCTG 1 cut(s) 467
Cfr13I GGNCC 1 cut(s) 117
CseI GACGC 3 cut(s) 91, 416, 808
Csp6I GTAC 2 cut(s) 642, 648
CviAII CATG 7 cut(s) 247, 344, 353, 619, 657, 766, 837
CviJI RGCY 8 cut(s) 70, 174, 372, 419, 485, 701, 728, 917
CviKI_1 RGCY 8 cut(s) 70, 174, 372, 419, 485, 701, 728, 917
CviQI GTAC 2 cut(s) 642, 648
DdeI CTNAG 4 cut(s) 146, 305, 697, 913
DpnI GATC 3 cut(s) 135, 215, 603
DpnII GATC 3 cut(s) 133, 213, 601
Eam1104I CTCTTC 2 cut(s) 462, 864
EarI CTCTTC 2 cut(s) 462, 864
Eco130I CCWWGG 1 cut(s) 836
Eco47I GGWCC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 881
Eco72I CACGTG 1 cut(s) 396
Eco88I CYCGRG 1 cut(s) 441
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 836
ErhI CCWWGG 1 cut(s) 836
FaeI CATG 7 cut(s) 250, 347, 356, 622, 660, 769, 840
FaqI GGGAC 1 cut(s) 67
FatI CATG 7 cut(s) 246, 343, 352, 618, 656, 765, 836
FauI CCCGC 1 cut(s) 465
FokI GGATG 7 cut(s) 17, 113, 313, 416, 677, 732, 854
GsaI CCCAGC 1 cut(s) 419
HapII CCGG 2 cut(s) 599, 743
HgaI GACGC 3 cut(s) 91, 416, 808
Hin1I GRCGYC 1 cut(s) 684
Hin1II CATG 7 cut(s) 250, 347, 356, 622, 660, 769, 840
HinfI GANTC 1 cut(s) 389
HpaII CCGG 2 cut(s) 599, 743
HphI GGTGA 2 cut(s) 176, 896
Hpy166II GTNNAC 2 cut(s) 540, 887
Hpy188III TCNNGA 5 cut(s) 461, 599, 625, 743, 830
Hpy8I GTNNAC 2 cut(s) 540, 887
HpyAV CCTTC 3 cut(s) 257, 778, 930
HpyCH4III ACNGT 4 cut(s) 51, 469, 514, 614
HpyCH4IV ACGT 2 cut(s) 395, 684
HpyCH4V TGCA 7 cut(s) 23, 108, 166, 250, 653, 758, 934
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 4 cut(s) 146, 305, 697, 913
HpySE526I ACGT 2 cut(s) 395, 684
Hsp92I GRCGYC 1 cut(s) 684
Hsp92II CATG 7 cut(s) 250, 347, 356, 622, 660, 769, 840
Kpn2I TCCGGA 2 cut(s) 598, 742
Kzo9I GATC 3 cut(s) 133, 213, 601
LguI GCTCTTC 1 cut(s) 462
LmnI GCTCC 3 cut(s) 340, 745, 922
LweI GCATC 2 cut(s) 662, 943
MaeII ACGT 2 cut(s) 395, 684
MaeIII GTNAC 1 cut(s) 298
MalI GATC 3 cut(s) 135, 215, 603
MboI GATC 3 cut(s) 133, 213, 601
MboII GAAGA 4 cut(s) 187, 190, 449, 851
MluCI AATT 2 cut(s) 430, 845
MmeI TCCRAC 1 cut(s) 459
MnlI CCTC 9 cut(s) 71, 84, 130, 197, 291, 394, 555, 654, 867
MroI TCCGGA 2 cut(s) 598, 742
MseI TTAA 6 cut(s) 96, 374, 429, 810, 954, 961
MslI CAYNNNNRTG 1 cut(s) 882
MspI CCGG 2 cut(s) 599, 743
MspR9I CCNGG 1 cut(s) 260
Mva1269I GAATGC 2 cut(s) 760, 858
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 416
NcoI CCATGG 1 cut(s) 836
NdeII GATC 3 cut(s) 133, 213, 601
NlaIII CATG 7 cut(s) 250, 347, 356, 622, 660, 769, 840
NspI RCATGY 1 cut(s) 347
OliI CACNNNNGTG 1 cut(s) 882
PciSI GCTCTTC 1 cut(s) 462
PctI GAATGC 2 cut(s) 760, 858
PfeI GAWTC 1 cut(s) 389
PmaCI CACGTG 1 cut(s) 396
PmlI CACGTG 1 cut(s) 396
Ppu21I YACGTR 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 258
PspCI CACGTG 1 cut(s) 396
PspFI CCCAGC 1 cut(s) 415
PspGI CCWGG 1 cut(s) 258
PspPI GGNCC 1 cut(s) 117
PstNI CAGNNNCTG 1 cut(s) 467
RsaI GTAC 2 cut(s) 643, 649
RsaNI GTAC 2 cut(s) 642, 648
RseI CAYNNNNRTG 1 cut(s) 882
SapI GCTCTTC 1 cut(s) 462
SaqAI TTAA 6 cut(s) 96, 374, 429, 810, 954, 961
Sau3AI GATC 3 cut(s) 133, 213, 601
Sau96I GGNCC 1 cut(s) 117
ScaI AGTACT 1 cut(s) 649
ScrFI CCNGG 1 cut(s) 260
SfaNI GCATC 2 cut(s) 662, 943
SinI GGWCC 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 882
Sse9I AATT 2 cut(s) 430, 845
SsiI CCGC 2 cut(s) 130, 472
StyD4I CCNGG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 836
TaaI ACNGT 4 cut(s) 51, 469, 514, 614
TaiI ACGT 2 cut(s) 398, 687
TaqI TCGA 2 cut(s) 216, 288
TasI AATT 2 cut(s) 430, 845
TatI WGTACW 1 cut(s) 647
TfiI GAWTC 1 cut(s) 389
Tru1I TTAA 6 cut(s) 96, 374, 429, 810, 954, 961
Tru9I TTAA 6 cut(s) 96, 374, 429, 810, 954, 961
TscAI CASTG 1 cut(s) 472
TspDTI ATGAA 2 cut(s) 19, 858
TspRI CASTG 1 cut(s) 472
VpaK11BI GGWCC 1 cut(s) 117
XceI RCATGY 1 cut(s) 347
ZraI GACGTC 1 cut(s) 685
ZrmI AGTACT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.