Rw5G037570

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000289
Physical Location & Seq
Forward (+)
66192147 .. 66193340
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G037570.1

Sequence Viewer

Length: 1014 bp
ATGCTTCCGGAGCTCCCAAACGTAATTACATGCCTTCATATACTCCCAAGGCTACCAGGCAAGTCCCTGATGCGCTTCAGGTGCGTATGCAAATCTTGGTGTGCTCTCACCCGTAACCCTTCATTTATCGAAACTCACCGAAACTTCAATAGCAACAAGCACAGTAATCTACTTCTCGCCACTTGGGACCGAACCACAAAGCAACAGCATTTCTTCTCAGTACAAATCCACCAAGAAGGAAGTCCACTACCAAGCACCAACCACCTTCTGAAACTTCCCACACCACTGACCAAGTATTCGTGCGTCTACAATGCACAGACTATGAATGGCTTGCAGGACCTCCGCATTCATCTATTCAATCCCTGCACTCGGGAATCCATTATTCTTCCTTATCCTACACCCGTACCTGGCACCTTTCATGAGGCATACCGCTTTGGGTTTTGTCCTCTTACAAATGAGTATCAGGTTCTTCAAGTGAAGAAGTCATTAATGATTACAGATTACCCTGTAACAATTATGAATTCTATTCAAATCTTTAAACTAGGTACGAGTTTCTGGAGGGGGATAGAGGCAGATGACAATGATCTACCTTTCGATTATCACAAGTGTCAGTTCCATAAGAGAAGTGTGTGCATGCATGGAGCCATACATTGGATGCATGGGATACAGAATATTATAGTGGTTATGGAATTTGAAGGACTACCAAAATCAACTAATCAAGTGTGGGTAACGGAGACCATCATCTTTCCCTCTTGTTTGCGGGAGTCCAATTTCCGGCCAGTTCCTTTTGGTACAATTCACACTGGGGAGCTCCTACTCCAATCTCCATTCCTAGTCAGACTCGACTCTGCTCATTTGAGGGTTCATCTGTACAATATGAAGAGTAAAAGTTTAAGGACAATTGAAATTTTTTTGCCGGAATGGATAATTCCGCGTTCTCAGACAAAGTTGAAGTTACTTCCTAGTTATGTTGACAGCATCGTCCCCCTAACGCATGTGATCGTTTTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

337

Amino Acids

39.01

Weight (kDa)

9.15

Isoelectric Point (pI)

52.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 5 - 41 3.4e-06 F-box-like
FBA_3 PF08268 66 - 231 3.4e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 980
AccB1I GGYRCC 1 cut(s) 410
AccB7I CCANNNNNTGG 1 cut(s) 651
AccI GTMKAC 1 cut(s) 306
AccII CGCG 1 cut(s) 934
AccIII TCCGGA 1 cut(s) 7
AciI CCGC 4 cut(s) 343, 430, 760, 932
AcoI YGGCCR 1 cut(s) 776
AcsI RAATTY 3 cut(s) 520, 689, 906
AcuI CTGAAG 1 cut(s) 61
AfaI GTAC 5 cut(s) 222, 405, 547, 793, 872
AfiI CCNNNNNNNGG 4 cut(s) 369, 407, 651, 774
AgsI TTSAA 7 cut(s) 148, 358, 473, 530, 695, 905, 952
AjnI CCWGG 2 cut(s) 55, 406
AluBI AGCT 2 cut(s) 13, 811
AluI AGCT 2 cut(s) 13, 811
Alw21I GWGCWC 3 cut(s) 15, 106, 813
Alw26I GTCTC 1 cut(s) 728
Ama87I CYCGRG 1 cut(s) 369
Aor13HI TCCGGA 1 cut(s) 7
AoxI GGCC 1 cut(s) 776
ApoI RAATTY 3 cut(s) 520, 689, 906
ArsI GACNNNNNNTTYG 2 cut(s) 280, 312
AseI ATTAAT 1 cut(s) 488
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 2 cut(s) 187, 337
AsuHPI GGTGA 2 cut(s) 100, 128
AvaI CYCGRG 1 cut(s) 369
AvaII GGWCC 2 cut(s) 187, 337
BaeI ACNNNNGTAYC 2 cut(s) 387, 420
BanI GGYRCC 1 cut(s) 410
BanII GRGCYC 2 cut(s) 15, 813
Bbv12I GWGCWC 3 cut(s) 15, 106, 813
BccI CCATC 1 cut(s) 746
BciT130I CCWGG 2 cut(s) 57, 408
BciVI GTATCC 1 cut(s) 657
BcoDI GTCTC 1 cut(s) 728
BfaI CTAG 3 cut(s) 542, 833, 963
BfuI GTATCC 1 cut(s) 657
Bme1390I CCNGG 2 cut(s) 57, 408
Bme18I GGWCC 2 cut(s) 187, 337
BmeT110I CYCGRG 1 cut(s) 369
BmgT120I GGNCC 2 cut(s) 187, 337
BmiI GGNNCC 3 cut(s) 188, 412, 643
BmrFI CCNGG 2 cut(s) 57, 408
BmrI ACTGGG 1 cut(s) 813
BmsI GCATC 3 cut(s) 60, 645, 987
BmuI ACTGGG 1 cut(s) 813
BpmI CTGGAG 1 cut(s) 577
BsaI GGTCTC 1 cut(s) 728
BsaJI CCNNGG 1 cut(s) 47
BsaWI WCCGGW 1 cut(s) 7
Bsc4I CCNNNNNNNGG 4 cut(s) 369, 407, 651, 774
Bse1I ACTGG 2 cut(s) 779, 808
BseAI TCCGGA 1 cut(s) 7
BseBI CCWGG 2 cut(s) 57, 408
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 660
BseLI CCNNNNNNNGG 4 cut(s) 369, 407, 651, 774
BseMII CTCAG 2 cut(s) 231, 953
BseNI ACTGG 2 cut(s) 779, 808
BsgI GTGCAG 1 cut(s) 349
Bsh1236I CGCG 1 cut(s) 934
BshFI GGCC 1 cut(s) 778
BshNI GGYRCC 1 cut(s) 410
BsiHKAI GWGCWC 3 cut(s) 15, 106, 813
BsiHKCI CYCGRG 1 cut(s) 369
BsiSI CCGG 3 cut(s) 8, 775, 917
BslFI GGGAC 3 cut(s) 49, 200, 968
BslI CCNNNNNNNGG 4 cut(s) 369, 407, 651, 774
BsmAI GTCTC 1 cut(s) 728
BsmFI GGGAC 3 cut(s) 49, 200, 968
BsmI GAATGC 1 cut(s) 345
BsnI GGCC 1 cut(s) 778
Bso31I GGTCTC 1 cut(s) 728
BsoBI CYCGRG 1 cut(s) 369
Bsp1286I GDGCHC 3 cut(s) 15, 106, 813
Bsp13I TCCGGA 1 cut(s) 7
Bsp1407I TGTACA 1 cut(s) 870
Bsp143I GATC 2 cut(s) 583, 999
BspACI CCGC 4 cut(s) 343, 430, 760, 932
BspANI GGCC 1 cut(s) 778
BspCNI CTCAG 2 cut(s) 230, 952
BspEI TCCGGA 1 cut(s) 7
BspFNI CGCG 1 cut(s) 934
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 3 cut(s) 188, 412, 643
BspT107I GGYRCC 1 cut(s) 410
BspTNI GGTCTC 1 cut(s) 728
BsrGI TGTACA 1 cut(s) 870
BsrI ACTGG 2 cut(s) 779, 808
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 2 cut(s) 583, 999
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 57, 408
Bst4CI ACNGT 1 cut(s) 164
Bst6I CTCTTC 1 cut(s) 875
BstAUI TGTACA 1 cut(s) 870
BstC8I GCNNGC 2 cut(s) 332, 635
BstDEI CTNAG 2 cut(s) 217, 939
BstF5I GGATG 1 cut(s) 660
BstFNI CGCG 1 cut(s) 934
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 2 cut(s) 586, 1002
BstMAI GTCTC 1 cut(s) 728
BstMBI GATC 2 cut(s) 583, 999
BstMWI GCNNNNNNNGC 2 cut(s) 10, 81
BstNI CCWGG 2 cut(s) 57, 408
BstNSI RCATGY 3 cut(s) 33, 637, 998
BstSCI CCNGG 2 cut(s) 55, 406
BstUI CGCG 1 cut(s) 934
BsuI GTATCC 1 cut(s) 657
BsuRI GGCC 1 cut(s) 778
BtsCI GGATG 1 cut(s) 660
BtsIMutI CAGTG 2 cut(s) 284, 801
Cac8I GCNNGC 2 cut(s) 332, 635
CciI TCATGA 1 cut(s) 418
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 2 cut(s) 187, 337
CseI GACGC 1 cut(s) 292
Csp6I GTAC 5 cut(s) 221, 404, 546, 792, 871
CviAII CATG 6 cut(s) 30, 419, 634, 638, 659, 995
CviJI RGCY 6 cut(s) 13, 52, 330, 644, 778, 811
CviKI_1 RGCY 6 cut(s) 13, 52, 330, 644, 778, 811
CviQI GTAC 5 cut(s) 221, 404, 546, 792, 871
DdeI CTNAG 2 cut(s) 217, 939
DpnI GATC 2 cut(s) 585, 1001
DpnII GATC 2 cut(s) 583, 999
DraI TTTAAA 1 cut(s) 538
DrdI GACNNNNNNGTC 1 cut(s) 980
DseDI GACNNNNNNGTC 1 cut(s) 980
EaeI YGGCCR 1 cut(s) 776
Eam1104I CTCTTC 1 cut(s) 875
EarI CTCTTC 1 cut(s) 875
Ecl136II GAGCTC 2 cut(s) 13, 811
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 2 cut(s) 15, 813
Eco31I GGTCTC 1 cut(s) 728
Eco47I GGWCC 2 cut(s) 187, 337
Eco53kI GAGCTC 2 cut(s) 13, 811
Eco57I CTGAAG 1 cut(s) 61
Eco88I CYCGRG 1 cut(s) 369
EcoICRI GAGCTC 2 cut(s) 13, 811
EcoO109I RGGNCCY 1 cut(s) 337
EcoRI GAATTC 1 cut(s) 520
EcoRII CCWGG 2 cut(s) 55, 406
EcoT14I CCWWGG 1 cut(s) 47
EcoT22I ATGCAT 2 cut(s) 639, 660
EcoT38I GRGCYC 2 cut(s) 15, 813
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 6 cut(s) 33, 422, 637, 641, 662, 998
FaqI GGGAC 3 cut(s) 49, 200, 968
FatI CATG 6 cut(s) 29, 418, 633, 637, 658, 994
FauI CCCGC 1 cut(s) 753
FblI GTMKAC 1 cut(s) 306
FokI GGATG 1 cut(s) 667
FriOI GRGCYC 2 cut(s) 15, 813
FspBI CTAG 3 cut(s) 542, 833, 963
GlaI GCGC 1 cut(s) 74
GsuI CTGGAG 1 cut(s) 577
HaeIII GGCC 1 cut(s) 778
HapII CCGG 3 cut(s) 8, 775, 917
HgaI GACGC 1 cut(s) 292
HhaI GCGC 1 cut(s) 75
Hin1II CATG 6 cut(s) 33, 422, 637, 641, 662, 998
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 1 cut(s) 973
HindII GTYRAC 1 cut(s) 973
HinfI GANTC 4 cut(s) 374, 764, 840, 845
HpaII CCGG 3 cut(s) 8, 775, 917
HphI GGTGA 2 cut(s) 100, 128
Hpy166II GTNNAC 3 cut(s) 245, 307, 973
Hpy188I TCNGA 3 cut(s) 270, 839, 942
Hpy188III TCNNGA 5 cut(s) 8, 371, 419, 556, 1011
Hpy8I GTNNAC 3 cut(s) 245, 307, 973
HpyAV CCTTC 5 cut(s) 44, 129, 230, 275, 689
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 7 cut(s) 90, 314, 334, 366, 633, 637, 658
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 81
HpyF3I CTNAG 2 cut(s) 217, 939
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 6 cut(s) 33, 422, 637, 641, 662, 998
HspAI GCGC 1 cut(s) 73
Kpn2I TCCGGA 1 cut(s) 7
Kzo9I GATC 2 cut(s) 583, 999
LmnI GCTCC 5 cut(s) 10, 18, 641, 808, 816
LweI GCATC 3 cut(s) 60, 645, 987
MaeI CTAG 3 cut(s) 542, 833, 963
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 4 cut(s) 113, 508, 727, 954
MalI GATC 2 cut(s) 585, 1001
MboI GATC 2 cut(s) 583, 999
MboII GAAGA 5 cut(s) 205, 377, 461, 490, 892
MfeI CAATTG 1 cut(s) 900
MhlI GDGCHC 3 cut(s) 15, 106, 813
MluCI AATT 9 cut(s) 24, 513, 520, 689, 769, 795, 900, 906, 927
MlyI GAGTC 3 cut(s) 773, 834, 839
MnlI CCTC 7 cut(s) 350, 415, 456, 552, 562, 760, 852
Mph1103I ATGCAT 2 cut(s) 639, 660
MroI TCCGGA 1 cut(s) 7
MseI TTAA 3 cut(s) 488, 537, 893
MspI CCGG 3 cut(s) 8, 775, 917
MspR9I CCNGG 2 cut(s) 57, 408
MunI CAATTG 1 cut(s) 900
Mva1269I GAATGC 1 cut(s) 345
MvaI CCWGG 2 cut(s) 57, 408
MvnI CGCG 1 cut(s) 934
MwoI GCNNNNNNNGC 2 cut(s) 10, 81
NdeII GATC 2 cut(s) 583, 999
NlaIII CATG 6 cut(s) 33, 422, 637, 641, 662, 998
NlaIV GGNNCC 3 cut(s) 188, 412, 643
NsiI ATGCAT 2 cut(s) 639, 660
NspI RCATGY 3 cut(s) 33, 637, 998
PaeI GCATGC 1 cut(s) 637
PagI TCATGA 1 cut(s) 418
PctI GAATGC 1 cut(s) 345
PfeI GAWTC 1 cut(s) 374
PflMI CCANNNNNTGG 1 cut(s) 651
PleI GAGTC 3 cut(s) 772, 834, 839
PpsI GAGTC 3 cut(s) 772, 834, 839
PpuMI RGGWCCY 1 cut(s) 337
PshBI ATTAAT 1 cut(s) 488
Psp124BI GAGCTC 2 cut(s) 15, 813
Psp5II RGGWCCY 1 cut(s) 337
Psp6I CCWGG 2 cut(s) 55, 406
PspGI CCWGG 2 cut(s) 55, 406
PspN4I GGNNCC 3 cut(s) 188, 412, 643
PspPI GGNCC 2 cut(s) 187, 337
PspPPI RGGWCCY 1 cut(s) 337
RsaI GTAC 5 cut(s) 222, 405, 547, 793, 872
RsaNI GTAC 5 cut(s) 221, 404, 546, 792, 871
SacI GAGCTC 2 cut(s) 15, 813
SaqAI TTAA 3 cut(s) 488, 537, 893
Sau3AI GATC 2 cut(s) 583, 999
Sau96I GGNCC 2 cut(s) 187, 337
SchI GAGTC 3 cut(s) 773, 834, 839
ScrFI CCNGG 2 cut(s) 57, 408
SduI GDGCHC 3 cut(s) 15, 106, 813
SfaNI GCATC 3 cut(s) 60, 645, 987
SinI GGWCC 2 cut(s) 187, 337
SphI GCATGC 1 cut(s) 637
Sse9I AATT 9 cut(s) 24, 513, 520, 689, 769, 795, 900, 906, 927
SsiI CCGC 4 cut(s) 343, 430, 760, 932
SspI AATATT 1 cut(s) 673
SspMI CTAG 3 cut(s) 542, 833, 963
SstI GAGCTC 2 cut(s) 15, 813
StyD4I CCNGG 2 cut(s) 55, 406
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 164
TaiI ACGT 1 cut(s) 24
TaqI TCGA 3 cut(s) 129, 594, 843
TaqII GACCGA 1 cut(s) 204
TasI AATT 9 cut(s) 24, 513, 520, 689, 769, 795, 900, 906, 927
TatI WGTACW 2 cut(s) 220, 870
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 3 cut(s) 488, 537, 893
Tru9I TTAA 3 cut(s) 488, 537, 893
TscAI CASTG 2 cut(s) 291, 808
TspDTI ATGAA 8 cut(s) 26, 111, 338, 338, 407, 533, 854, 893
TspGWI ACGGA 1 cut(s) 746
TspRI CASTG 2 cut(s) 291, 808
Van91I CCANNNNNTGG 1 cut(s) 651
VpaK11BI GGWCC 2 cut(s) 187, 337
VspI ATTAAT 1 cut(s) 488
XapI RAATTY 3 cut(s) 520, 689, 906
XceI RCATGY 3 cut(s) 33, 637, 998
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 3 cut(s) 542, 833, 963
Zsp2I ATGCAT 2 cut(s) 639, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.