RLG00000009284

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000289
Physical Location & Seq
Forward (+)
50238875 .. 50239953
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009284

Sequence Viewer

Length: 999 bp
ATGGAAGATGATGCAGAAACGACATCCTGGTCCTCTCTCATCCTCAACCCTGGTTTCGCTACCGCTTACCGAAACCTCTACTCCAGGGAGAGAAAGCGCTCTCACCTCCTCTTCTTTACCTGCGAATCTGAATATCCAAAGGAGCAACGCGTCTTCTCCGTTCAACTCAACCAAGGAGGGAGCCAAACACCCGCCACCCACATTCTTACTTTAAAGCAACTATATCAAGCACAAAGCACTAAGGGCTTGGTCTGTTTTTCCCTTTCTAAAACTTCGAGTTCTTACCTTGAGGTCCTTGACAACCGTGTTCATGTATTCAATCCCTCAACTCGACATGTGGTTACTCTCCCCCAAACTTCACGCTTGAATCTCACTGTCTATGTTGCACACCACTTTGGATTCAGCTCTCTTACAAACGAGTACAAGGTTCTCCAAATCCAAAGATATAAGCGGGGTTTAATTTTTAACACTTTTGTCCTTGGTACAAGTACTACATGGCGGCAGGTAGAGGTAGACCAGCTTGCTGATCTCCCTTTCGATCCTCTAGAGTTCAAATTTGATACTAGCAGTGTATCCACCCATGGGGTTATAGATTGGCTGCACCCAACATTAAATATTATAGTGGCTTTCGACATGAATGGGGCTGAGAGATTTAAGGTGGTACCAATTCCTGATGGTATTGATCTACATGATCCCCTTGTCAAACTAGATAAAGTGGATGGATGTCTGGCTCTAATAGATGGGCGAAAGCAGCGAAAATACATGAAGGGGTTATGGATTTTGAAGGAGTACAAAAATCAGGTCTGGGTTAAGGAGGATATATTGTTTCCTTATCAGAATGATATAGTACGGGGCTTAGCCGATCTTCGTTTGCATCAATACAATATGAAGACTAAAAGTTATAGGTTTAGTCAAATTTTGTTGCCGGAATGGAGGAATGATAGTCGAATGCTGGAGATGCTAACTAGTTATGATGAAGCCATTGTAACTTTAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

333

Amino Acids

38.51

Weight (kDa)

8.58

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 37 - 285 2.5e-23 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 28
Acc36I ACCTGC 2 cut(s) 128, 493
Acc65I GGTACC 1 cut(s) 661
AccB1I GGYRCC 1 cut(s) 661
AccI GTMKAC 1 cut(s) 513
AccII CGCG 1 cut(s) 150
AciI CCGC 4 cut(s) 63, 192, 451, 499
AclWI GGATC 2 cut(s) 533, 686
AcsI RAATTY 2 cut(s) 554, 915
AfaI GTAC 6 cut(s) 422, 484, 490, 663, 791, 849
AfeI AGCGCT 1 cut(s) 98
AfiI CCNNNNNNNGG 1 cut(s) 582
AflIII ACRYGT 2 cut(s) 148, 334
AgsI TTSAA 5 cut(s) 164, 319, 367, 553, 784
AhlI ACTAGT 1 cut(s) 965
AjnI CCWGG 3 cut(s) 26, 49, 83
AluBI AGCT 2 cut(s) 405, 520
AluI AGCT 2 cut(s) 405, 520
AlwI GGATC 2 cut(s) 533, 686
Aor51HI AGCGCT 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 598, 751
ApoI RAATTY 2 cut(s) 554, 915
ArsI GACNNNNNNTTYG 2 cut(s) 786, 818
Asp718I GGTACC 1 cut(s) 661
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 2 cut(s) 30, 292
AsuHPI GGTGA 1 cut(s) 95
AvaII GGWCC 2 cut(s) 30, 292
BanI GGYRCC 1 cut(s) 661
BbsI GAAGAC 2 cut(s) 145, 896
BbvI GCAGC 2 cut(s) 585, 763
BccI CCATC 3 cut(s) 668, 713, 734
BciT130I CCWGG 3 cut(s) 28, 51, 85
BciVI GTATCC 1 cut(s) 583
BcuI ACTAGT 1 cut(s) 965
BfaI CTAG 4 cut(s) 545, 564, 707, 966
BfoI RGCGCY 1 cut(s) 100
BfuAI ACCTGC 2 cut(s) 128, 493
BfuI GTATCC 1 cut(s) 583
BisI GCNGC 3 cut(s) 500, 599, 752
BlpI GCTNAGC 1 cut(s) 856
BlsI GCNGC 3 cut(s) 501, 600, 753
BmcAI AGTACT 1 cut(s) 490
Bme1390I CCNGG 3 cut(s) 28, 51, 85
Bme18I GGWCC 2 cut(s) 30, 292
BmgT120I GGNCC 2 cut(s) 30, 292
BmiI GGNNCC 2 cut(s) 182, 663
BmrFI CCNGG 3 cut(s) 28, 51, 85
BmsI GCATC 2 cut(s) 883, 948
BpiI GAAGAC 2 cut(s) 145, 896
BpmI CTGGAG 2 cut(s) 67, 974
Bpu1102I GCTNAGC 1 cut(s) 856
BpuEI CTTGAG 1 cut(s) 308
BsaJI CCNNGG 5 cut(s) 49, 84, 172, 478, 580
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 1 cut(s) 582
BseBI CCWGG 3 cut(s) 28, 51, 85
BseDI CCNNGG 5 cut(s) 49, 84, 172, 478, 580
BseGI GGATG 4 cut(s) 23, 39, 724, 728
BseLI CCNNNNNNNGG 1 cut(s) 582
BseMII CTCAG 1 cut(s) 636
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 2 cut(s) 585, 763
BsgI GTGCAG 1 cut(s) 584
Bsh1236I CGCG 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 661
BsiSI CCGG 1 cut(s) 926
BslI CCNNNNNNNGG 1 cut(s) 582
BsmI GAATGC 1 cut(s) 954
Bsp143I GATC 5 cut(s) 526, 538, 682, 691, 862
Bsp1720I GCTNAGC 1 cut(s) 856
Bsp19I CCATGG 1 cut(s) 580
BspACI CCGC 4 cut(s) 63, 192, 451, 499
BspCNI CTCAG 1 cut(s) 637
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 2 cut(s) 182, 663
BspMI ACCTGC 2 cut(s) 128, 493
BspPI GGATC 2 cut(s) 533, 686
BspT107I GGYRCC 1 cut(s) 661
BssECI CCNNGG 5 cut(s) 49, 84, 172, 478, 580
BssMI GATC 5 cut(s) 526, 538, 682, 691, 862
BssT1I CCWWGG 3 cut(s) 172, 478, 580
Bst2UI CCWGG 3 cut(s) 28, 51, 85
Bst4CI ACNGT 2 cut(s) 305, 376
Bst6I CTCTTC 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 522
BstDEI CTNAG 3 cut(s) 240, 645, 856
BstDSI CCRYGG 1 cut(s) 580
BstF5I GGATG 4 cut(s) 23, 39, 724, 728
BstFNI CGCG 1 cut(s) 150
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 5 cut(s) 529, 541, 685, 694, 865
BstMBI GATC 5 cut(s) 526, 538, 682, 691, 862
BstMWI GCNNNNNNNGC 3 cut(s) 243, 751, 958
BstNI CCWGG 3 cut(s) 28, 51, 85
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 3 cut(s) 26, 49, 83
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 585, 763
BstV2I GAAGAC 2 cut(s) 145, 896
BsuI GTATCC 1 cut(s) 583
BtgI CCRYGG 1 cut(s) 580
BtsCI GGATG 4 cut(s) 23, 39, 724, 728
BtsI GCAGTG 1 cut(s) 574
BtsIMutI CAGTG 2 cut(s) 372, 574
BveI ACCTGC 2 cut(s) 128, 493
Cac8I GCNNGC 1 cut(s) 522
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 30, 292
CseI GACGC 1 cut(s) 139
Csp6I GTAC 6 cut(s) 421, 483, 489, 662, 790, 848
CviAII CATG 7 cut(s) 311, 335, 495, 581, 634, 689, 763
CviQI GTAC 6 cut(s) 421, 483, 489, 662, 790, 848
DdeI CTNAG 3 cut(s) 240, 645, 856
DpnI GATC 5 cut(s) 528, 540, 684, 693, 864
DpnII GATC 5 cut(s) 526, 538, 682, 691, 862
DraI TTTAAA 1 cut(s) 213
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco130I CCWWGG 3 cut(s) 172, 478, 580
Eco47I GGWCC 2 cut(s) 30, 292
Eco47III AGCGCT 1 cut(s) 98
EcoO109I RGGNCCY 1 cut(s) 292
EcoRII CCWGG 3 cut(s) 26, 49, 83
EcoT14I CCWWGG 3 cut(s) 172, 478, 580
ErhI CCWWGG 3 cut(s) 172, 478, 580
FaeI CATG 7 cut(s) 314, 338, 498, 584, 637, 692, 766
FatI CATG 7 cut(s) 310, 334, 494, 580, 633, 688, 762
FauI CCCGC 2 cut(s) 199, 444
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 3 cut(s) 500, 599, 752
FokI GGATG 4 cut(s) 10, 26, 731, 735
Fsp4HI GCNGC 3 cut(s) 500, 599, 752
FspBI CTAG 4 cut(s) 545, 564, 707, 966
GlaI GCGC 1 cut(s) 98
GluI GCNGC 3 cut(s) 500, 599, 752
GsuI CTGGAG 2 cut(s) 67, 974
HaeII RGCGCY 1 cut(s) 100
HapII CCGG 1 cut(s) 926
HgaI GACGC 1 cut(s) 139
HhaI GCGC 1 cut(s) 99
Hin1II CATG 7 cut(s) 314, 338, 498, 584, 637, 692, 766
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 3 cut(s) 125, 367, 399
HpaII CCGG 1 cut(s) 926
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 2 cut(s) 130, 837
Hpy188III TCNNGA 2 cut(s) 545, 671
Hpy8I GTNNAC 1 cut(s) 514
HpyAV CCTTC 2 cut(s) 760, 778
HpyCH4III ACNGT 2 cut(s) 305, 376
HpyCH4V TGCA 4 cut(s) 14, 386, 601, 874
HpyF10VI GCNNNNNNNGC 3 cut(s) 243, 751, 958
HpyF3I CTNAG 3 cut(s) 240, 645, 856
Hsp92II CATG 7 cut(s) 314, 338, 498, 584, 637, 692, 766
HspAI GCGC 1 cut(s) 97
KpnI GGTACC 1 cut(s) 665
Kzo9I GATC 5 cut(s) 526, 538, 682, 691, 862
LmnI GCTCC 2 cut(s) 142, 180
Lsp1109I GCAGC 2 cut(s) 585, 763
LweI GCATC 2 cut(s) 883, 948
MaeI CTAG 4 cut(s) 545, 564, 707, 966
MaeIII GTNAC 2 cut(s) 340, 985
MalI GATC 5 cut(s) 528, 540, 684, 693, 864
MboI GATC 5 cut(s) 526, 538, 682, 691, 862
MboII GAAGA 5 cut(s) 17, 103, 145, 857, 901
MluCI AATT 4 cut(s) 459, 554, 666, 915
MluI ACGCGT 1 cut(s) 148
MseI TTAA 7 cut(s) 212, 458, 465, 611, 654, 810, 992
MspI CCGG 1 cut(s) 926
MspR9I CCNGG 3 cut(s) 28, 51, 85
Mva1269I GAATGC 1 cut(s) 954
MvaI CCWGG 3 cut(s) 28, 51, 85
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 3 cut(s) 243, 751, 958
NcoI CCATGG 1 cut(s) 580
NdeII GATC 5 cut(s) 526, 538, 682, 691, 862
NlaIII CATG 7 cut(s) 314, 338, 498, 584, 637, 692, 766
NlaIV GGNNCC 2 cut(s) 182, 663
NspI RCATGY 1 cut(s) 338
PciI ACATGT 1 cut(s) 334
PctI GAATGC 1 cut(s) 954
PfeI GAWTC 3 cut(s) 125, 367, 399
PkrI GCNGC 3 cut(s) 501, 600, 753
PpuMI RGGWCCY 1 cut(s) 292
PscI ACATGT 1 cut(s) 334
Psp5II RGGWCCY 1 cut(s) 292
Psp6I CCWGG 3 cut(s) 26, 49, 83
PspGI CCWGG 3 cut(s) 26, 49, 83
PspN4I GGNNCC 2 cut(s) 182, 663
PspPI GGNCC 2 cut(s) 30, 292
PspPPI RGGWCCY 1 cut(s) 292
RsaI GTAC 6 cut(s) 422, 484, 490, 663, 791, 849
RsaNI GTAC 6 cut(s) 421, 483, 489, 662, 790, 848
SaqAI TTAA 7 cut(s) 212, 458, 465, 611, 654, 810, 992
SatI GCNGC 3 cut(s) 500, 599, 752
Sau3AI GATC 5 cut(s) 526, 538, 682, 691, 862
Sau96I GGNCC 2 cut(s) 30, 292
ScaI AGTACT 1 cut(s) 490
ScrFI CCNGG 3 cut(s) 28, 51, 85
SfaNI GCATC 2 cut(s) 883, 948
SinI GGWCC 2 cut(s) 30, 292
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
SpeI ACTAGT 1 cut(s) 965
Sse9I AATT 4 cut(s) 459, 554, 666, 915
SsiI CCGC 4 cut(s) 63, 192, 451, 499
SspI AATATT 1 cut(s) 616
SspMI CTAG 4 cut(s) 545, 564, 707, 966
StyD4I CCNGG 3 cut(s) 26, 49, 83
StyI CCWWGG 3 cut(s) 172, 478, 580
TaaI ACNGT 2 cut(s) 305, 376
TaqI TCGA 5 cut(s) 275, 331, 537, 630, 946
TasI AATT 4 cut(s) 459, 554, 666, 915
TatI WGTACW 3 cut(s) 420, 488, 789
TauI GCSGC 1 cut(s) 502
TfiI GAWTC 3 cut(s) 125, 367, 399
Tru1I TTAA 7 cut(s) 212, 458, 465, 611, 654, 810, 992
Tru9I TTAA 7 cut(s) 212, 458, 465, 611, 654, 810, 992
TscAI CASTG 2 cut(s) 379, 574
TseI GCWGC 2 cut(s) 598, 751
TspDTI ATGAA 5 cut(s) 299, 650, 779, 902, 990
TspGWI ACGGA 1 cut(s) 148
TspRI CASTG 2 cut(s) 379, 574
VpaK11BI GGWCC 2 cut(s) 30, 292
XapI RAATTY 2 cut(s) 554, 915
XbaI TCTAGA 1 cut(s) 544
XceI RCATGY 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 513
XspI CTAG 4 cut(s) 545, 564, 707, 966
ZrmI AGTACT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.