Rh2AG399300

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000289
Physical Location & Seq
Forward (+)
59541594 .. 59542061
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG399300.1

Sequence Viewer

Length: 468 bp
ATGCTAGTGTTTCATATTGTTTTCAACATACAGTGGCACCCAAATTTGGCTGAACCAGAGAGAGAGCAGATATGTCAATCTTTGACTTGCAAAAATCTCACTTCTGAAGTTGGAATTCAAGCAGCAAAAAACCGTGTTTTGTCATTAAGAACAATTGAAGAGCTTTTCTATCTCAACAACCAGGAACTTAAAGATGAAGTTGAAGAGCATAAGAACCGGATTTCTGATCTTGAGAGTGCGAACATGAAGATGAATGAAGTCATTGAGAATCTAAAGAAAGAGGTGGAGAAGTTGGGCAGTGGGCATTCAAAACGATCAAACAAGTGGACAACGATGTCTAAGAAATTGGGCTTCAGCAAGAAGCCTCTGCAACTGGGGTGTCGTACAAGTCAGGATGCAGTGCACAACCCAAACCCTAGGAGGAAGGACAACGTTAGTTCTACCGGAAAATACGGACTCCTCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

155

Amino Acids

17.82

Weight (kDa)

9.15

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 334
AccB1I GGYRCC 1 cut(s) 36
AclI AACGTT 1 cut(s) 432
AcsI RAATTY 2 cut(s) 43, 114
AcuI CTGAAG 2 cut(s) 126, 337
AfaI GTAC 1 cut(s) 385
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 5 cut(s) 25, 119, 158, 203, 309
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw21I GWGCWC 1 cut(s) 405
Alw44I GTGCAC 1 cut(s) 401
ApaLI GTGCAC 1 cut(s) 401
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 2 cut(s) 43, 114
AspA2I CCTAGG 1 cut(s) 416
AvrII CCTAGG 1 cut(s) 416
BaeGI GKGCMC 1 cut(s) 405
BanI GGYRCC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 182
BfaI CTAG 2 cut(s) 5, 417
BisI GCNGC 1 cut(s) 123
BlnI CCTAGG 1 cut(s) 416
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 182
BmrI ACTGGG 1 cut(s) 383
BmsI GCATC 1 cut(s) 385
BmuI ACTGGG 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 416
BsaWI WCCGGW 2 cut(s) 216, 443
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse1I ACTGG 1 cut(s) 378
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 416
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 1 cut(s) 46
BseNI ACTGG 1 cut(s) 378
BseRI GAGGAG 2 cut(s) 449, 452
BseSI GKGCMC 1 cut(s) 405
BseXI GCAGC 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 405
BsiSI CCGG 2 cut(s) 217, 444
BslI CCNNNNNNNGG 1 cut(s) 46
BsmI GAATGC 1 cut(s) 304
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 2 cut(s) 226, 314
BspLI GGNNCC 1 cut(s) 38
BspQI GCTCTTC 2 cut(s) 153, 198
BspT107I GGYRCC 1 cut(s) 36
BsrI ACTGG 1 cut(s) 378
BssECI CCNNGG 1 cut(s) 416
BssMI GATC 2 cut(s) 226, 314
BssT1I CCWWGG 1 cut(s) 416
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 2 cut(s) 33, 134
Bst6I CTCTTC 2 cut(s) 153, 198
BstDEI CTNAG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 400
BstKTI GATC 2 cut(s) 229, 317
BstMBI GATC 2 cut(s) 226, 314
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 405
BstV1I GCAGC 1 cut(s) 134
BtsCI GGATG 1 cut(s) 400
BtsI GCAGTG 2 cut(s) 304, 405
BtsIMutI CAGTG 3 cut(s) 38, 304, 405
Csp6I GTAC 1 cut(s) 384
CviAII CATG 1 cut(s) 244
CviJI RGCY 4 cut(s) 50, 163, 351, 364
CviKI_1 RGCY 4 cut(s) 50, 163, 351, 364
CviQI GTAC 1 cut(s) 384
DdeI CTNAG 1 cut(s) 339
DpnI GATC 2 cut(s) 228, 316
DpnII GATC 2 cut(s) 226, 314
DrdI GACNNNNNNGTC 1 cut(s) 334
DseDI GACNNNNNNGTC 1 cut(s) 334
Eam1104I CTCTTC 2 cut(s) 153, 198
EarI CTCTTC 2 cut(s) 153, 198
Eco130I CCWWGG 1 cut(s) 416
Eco57I CTGAAG 2 cut(s) 126, 337
EcoRI GAATTC 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 416
ErhI CCWWGG 1 cut(s) 416
FaeI CATG 1 cut(s) 247
FaiI YATR 5 cut(s) 15, 29, 73, 210, 245
FatI CATG 1 cut(s) 243
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 1 cut(s) 407
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 2 cut(s) 5, 417
GluI GCNGC 1 cut(s) 123
HapII CCGG 2 cut(s) 217, 444
Hin1II CATG 1 cut(s) 247
HinfI GANTC 2 cut(s) 268, 456
HpaII CCGG 2 cut(s) 217, 444
Hpy166II GTNNAC 2 cut(s) 327, 403
Hpy188I TCNGA 3 cut(s) 106, 226, 467
Hpy188III TCNNGA 2 cut(s) 230, 392
Hpy8I GTNNAC 2 cut(s) 327, 403
HpyAV CCTTC 1 cut(s) 418
HpyCH4III ACNGT 2 cut(s) 33, 134
HpyCH4IV ACGT 1 cut(s) 432
HpyCH4V TGCA 4 cut(s) 90, 370, 398, 403
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 1 cut(s) 432
Hsp92II CATG 1 cut(s) 247
Kzo9I GATC 2 cut(s) 226, 314
LguI GCTCTTC 2 cut(s) 153, 198
LpnPI CCDG 7 cut(s) 69, 167, 194, 230, 359, 377, 457
Lsp1109I GCAGC 1 cut(s) 134
LweI GCATC 1 cut(s) 385
MaeI CTAG 2 cut(s) 5, 417
MaeII ACGT 1 cut(s) 432
MalI GATC 2 cut(s) 228, 316
MboI GATC 2 cut(s) 226, 314
MboII GAAGA 3 cut(s) 170, 215, 259
MfeI CAATTG 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 4 cut(s) 43, 114, 153, 344
MlyI GAGTC 1 cut(s) 450
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 3 cut(s) 274, 375, 414
MseI TTAA 2 cut(s) 146, 189
MslI CAYNNNNRTG 1 cut(s) 248
MspI CCGG 2 cut(s) 217, 444
MspR9I CCNGG 1 cut(s) 182
MunI CAATTG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 1 cut(s) 182
NdeII GATC 2 cut(s) 226, 314
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 1 cut(s) 38
PciSI GCTCTTC 2 cut(s) 153, 198
PctI GAATGC 1 cut(s) 304
PfeI GAWTC 1 cut(s) 268
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 1 cut(s) 450
PpsI GAGTC 1 cut(s) 450
Psp1406I AACGTT 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 38
RsaI GTAC 1 cut(s) 385
RsaNI GTAC 1 cut(s) 384
RseI CAYNNNNRTG 1 cut(s) 248
SapI GCTCTTC 2 cut(s) 153, 198
SaqAI TTAA 2 cut(s) 146, 189
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 2 cut(s) 226, 314
SchI GAGTC 1 cut(s) 450
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 1 cut(s) 405
SetI ASST 3 cut(s) 165, 285, 435
SfaNI GCATC 1 cut(s) 385
SmiMI CAYNNNNRTG 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 4 cut(s) 43, 114, 153, 344
SspMI CTAG 2 cut(s) 5, 417
StyD4I CCNGG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 416
TaaI ACNGT 2 cut(s) 33, 134
TaiI ACGT 1 cut(s) 435
TasI AATT 4 cut(s) 43, 114, 153, 344
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 2 cut(s) 146, 189
Tru9I TTAA 2 cut(s) 146, 189
TscAI CASTG 3 cut(s) 38, 304, 405
TseI GCWGC 1 cut(s) 122
TspDTI ATGAA 4 cut(s) 210, 260, 266, 270
TspGWI ACGGA 1 cut(s) 468
TspRI CASTG 3 cut(s) 38, 304, 405
VneI GTGCAC 1 cut(s) 401
XapI RAATTY 2 cut(s) 43, 114
XmaJI CCTAGG 1 cut(s) 416
XspI CTAG 2 cut(s) 5, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.