Rh5DG425800

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000289
Physical Location & Seq
Forward (+)
67958657 .. 67960568
1912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG425800.1

Sequence Viewer

Length: 399 bp
ATGATTACAGATTACCCTGTAACAATTATGAATTCTATTCAAATCTTTAAACTAGGTACGAGTTTCTGGAGGGGGATAGAGGCAGATGACAATGATCTACCTTTCGATTATCACAAGTGTCAGTTCCATAAGAGAAGTGTGTGCATGCATGGAGCCATACATTGGATGCATGGGATACAGAATATTATAGTGGTTTATGACCTTAAAGACGAGAGGTTTAGAGTGATCCCGTTTCCTAAAGATTATGATTATCATATTGTTCTTTTTAGCCCGACTTTTGGGAGTATAGTTGAAGTGGGTGGATGCTTGGCTCTAATAGATGACAAGGAGTCGAAACAAAATATGTTGAGGTTATGGAATTTGAAGGACTACCAAAATCAACTAATCAAGTGTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

132

Amino Acids

15.5

Weight (kDa)

6.27

Isoelectric Point (pI)

56.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 9 - 127 1.6e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 162
AclWI GGATC 1 cut(s) 220
AcsI RAATTY 2 cut(s) 31, 358
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 2 cut(s) 162, 278
AgsI TTSAA 3 cut(s) 41, 293, 364
AhdI GACNNNNNGTC 1 cut(s) 328
AlwI GGATC 1 cut(s) 220
ApoI RAATTY 2 cut(s) 31, 358
BciVI GTATCC 1 cut(s) 168
BfaI CTAG 1 cut(s) 53
BfuI GTATCC 1 cut(s) 168
BmeRI GACNNNNNGTC 1 cut(s) 328
BmiI GGNNCC 1 cut(s) 154
BmsI GCATC 2 cut(s) 156, 293
BpmI CTGGAG 1 cut(s) 88
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 278
BseGI GGATG 2 cut(s) 171, 308
BseLI CCNNNNNNNGG 2 cut(s) 162, 278
BslI CCNNNNNNNGG 2 cut(s) 162, 278
Bsp143I GATC 2 cut(s) 94, 225
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 1 cut(s) 220
BssMI GATC 2 cut(s) 94, 225
BstC8I GCNNGC 1 cut(s) 146
BstF5I GGATG 2 cut(s) 171, 308
BstKTI GATC 2 cut(s) 97, 228
BstMBI GATC 2 cut(s) 94, 225
BstNSI RCATGY 1 cut(s) 148
BsuI GTATCC 1 cut(s) 168
BtsCI GGATG 2 cut(s) 171, 308
Cac8I GCNNGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 57
CviAII CATG 3 cut(s) 145, 149, 170
CviJI RGCY 3 cut(s) 155, 270, 311
CviKI_1 RGCY 3 cut(s) 155, 270, 311
CviQI GTAC 1 cut(s) 57
DpnI GATC 2 cut(s) 96, 227
DpnII GATC 2 cut(s) 94, 225
DraI TTTAAA 1 cut(s) 49
DriI GACNNNNNGTC 1 cut(s) 328
Eam1105I GACNNNNNGTC 1 cut(s) 328
EcoRI GAATTC 1 cut(s) 31
EcoT22I ATGCAT 2 cut(s) 150, 171
FaeI CATG 3 cut(s) 148, 152, 173
FatI CATG 3 cut(s) 144, 148, 169
FokI GGATG 2 cut(s) 178, 315
FspBI CTAG 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 88
Hin1II CATG 3 cut(s) 148, 152, 173
HinfI GANTC 1 cut(s) 329
Hpy188III TCNNGA 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 358
HpyCH4V TGCA 3 cut(s) 144, 148, 169
Hsp92II CATG 3 cut(s) 148, 152, 173
Kzo9I GATC 2 cut(s) 94, 225
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 2 cut(s) 30, 52
LweI GCATC 2 cut(s) 156, 293
MaeI CTAG 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 19
MalI GATC 2 cut(s) 96, 227
MboI GATC 2 cut(s) 94, 225
MluCI AATT 3 cut(s) 24, 31, 358
MlyI GAGTC 1 cut(s) 338
MnlI CCTC 4 cut(s) 63, 73, 207, 342
Mph1103I ATGCAT 2 cut(s) 150, 171
MseI TTAA 2 cut(s) 48, 204
NdeII GATC 2 cut(s) 94, 225
NlaIII CATG 3 cut(s) 148, 152, 173
NlaIV GGNNCC 1 cut(s) 154
NsiI ATGCAT 2 cut(s) 150, 171
NspI RCATGY 1 cut(s) 148
PaeI GCATGC 1 cut(s) 148
PflMI CCANNNNNTGG 1 cut(s) 162
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 154
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
SaqAI TTAA 2 cut(s) 48, 204
Sau3AI GATC 2 cut(s) 94, 225
SchI GAGTC 1 cut(s) 338
SetI ASST 5 cut(s) 58, 103, 204, 218, 353
SfaNI GCATC 2 cut(s) 156, 293
SphI GCATGC 1 cut(s) 148
Sse9I AATT 3 cut(s) 24, 31, 358
SspI AATATT 1 cut(s) 184
SspMI CTAG 1 cut(s) 53
TaqI TCGA 2 cut(s) 105, 332
TasI AATT 3 cut(s) 24, 31, 358
Tru1I TTAA 2 cut(s) 48, 204
Tru9I TTAA 2 cut(s) 48, 204
TspDTI ATGAA 1 cut(s) 44
Van91I CCANNNNNTGG 1 cut(s) 162
XapI RAATTY 2 cut(s) 31, 358
XceI RCATGY 1 cut(s) 148
XspI CTAG 1 cut(s) 53
Zsp2I ATGCAT 2 cut(s) 150, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.