FvH4_4g34271

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000289
Physical Location & Seq
Forward (+)
32148832 .. 32150434
1603 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34271.t1

Sequence Viewer

Length: 1113 bp
ATGAACATGGAAAAAACTGATGAAGATCCCAACCTGCCGAGCAAAATCATATGGGTTGAAATACTCCCAAGGCTACCGCGAAAGAAACTGATGCAGTTTCGGTGTGTTAGCAAATCATGGAAAGCTCTCCTCTCTGCTAACCCTGGATTTTGGAGGATCCATCGAAACTTCCACCCCCACAACACCGGTTATCTCCTTTTTAAAGCTCACAGCGGCTCCGCCTTCGGCTCTGGCTCCGATGTTACCCGAAAGCACTACCTTCTCCTCGTCAAAGCCGGCCAAGACAGAAATACTCCATCATATGTCACTGACCTTATGCCACTGCCCTTTCAAATCATCAAAACGCCATATGCTAACAGCTTGGTATTAGGGCGCAGTGGTTGGATTAATGATCCCATTTATATATATAACCCCTTCGCCCAAGATTCTGTTATTGTTCCCAATCCTACTTTCGAATATGAACAGTTGTCTATCGGCTTCAGTCCTAGAACAAACGAGTATAAGGTTGTGGCAACCTTGCGTGTTCCAGGTTACGTAGCAACCTTGCGTGTTGAAGGTTTAGTAGGATTTAAGATTTTCACACTAGGTCAATGTTCATGGAGAGACATGGTGGTAGACTGGTATGACCTGTCATTTGTTCATCCTCCGTCTTCGGACTTCTGGAACAGTACTGTATGTGTCCATGGAGTTCTACACTGGTTAGCTCCTAGTGATGAAGTTATATTTGCTCTTGACATTGGAGATGAGAGGTTTAGAATCATACCAGTACCTTCTCACATTCGAAGTTCCAAAAAGATTATCGAAGTGGATGGATGTCTTTGTATAGTATGTGAGACTGGGAAGGTGTGGATTTTGAAGGACTACATACATCAAGTGTGGGTTGCGGAGACCATCGAATTTCCCCGTCGAATTTTCCGCTTGCCTCAGTGTGCCAGCGACACCGGTGAGCTTGTATTTGGCGTTTCTAAAGACAATTATCTCCAATTATATGACAGGAAAAGTAAAAGCTCTCGGCAGAGTGAAATCATTTTTCCCAAAATGTTTAGTGATCTAGGATTGAGACTGGATTATTCTGATGATCGCTGTGACGATTGTATTGTTCCCTTACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

371

Amino Acids

42.49

Weight (kDa)

8.01

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 112 - 342 6.8e-20 F-box associated beta propeller domain
FBA_1 PF07734 128 - 299 6.1e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 42
AccI GTMKAC 1 cut(s) 615
AccII CGCG 1 cut(s) 79
AciI CCGC 5 cut(s) 77, 213, 219, 884, 916
AclWI GGATC 4 cut(s) 20, 151, 164, 386
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 2 cut(s) 896, 909
AcuI CTGAAG 1 cut(s) 463
AfaI GTAC 2 cut(s) 670, 768
AgeI ACCGGT 2 cut(s) 185, 941
AgsI TTSAA 4 cut(s) 59, 332, 554, 856
AjnI CCWGG 2 cut(s) 142, 526
AjuI GAANNNNNNNTTGG 2 cut(s) 434, 466
AluBI AGCT 6 cut(s) 125, 206, 360, 704, 949, 1008
AluI AGCT 6 cut(s) 125, 206, 360, 704, 949, 1008
Alw26I GTCTC 4 cut(s) 597, 827, 881, 1054
AlwI GGATC 4 cut(s) 20, 151, 164, 386
AoxI GGCC 1 cut(s) 277
ApoI RAATTY 2 cut(s) 896, 909
ArsI GACNNNNNNTTYG 2 cut(s) 617, 649
AseI ATTAAT 1 cut(s) 387
AsiGI ACCGGT 2 cut(s) 185, 941
AspLEI GCGC 1 cut(s) 375
AsuHPI GGTGA 1 cut(s) 956
AsuII TTCGAA 2 cut(s) 453, 781
BamHI GGATCC 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 642
BccI CCATC 4 cut(s) 168, 304, 803, 899
BciT130I CCWGG 2 cut(s) 144, 528
BcoDI GTCTC 4 cut(s) 597, 827, 881, 1054
BfaI CTAG 4 cut(s) 486, 584, 708, 1052
BfuAI ACCTGC 1 cut(s) 42
BisI GCNGC 1 cut(s) 214
BlsI GCNGC 1 cut(s) 215
BmcAI AGTACT 1 cut(s) 670
Bme1390I CCNGG 2 cut(s) 144, 528
BmiI GGNNCC 3 cut(s) 158, 217, 235
BmrFI CCNGG 2 cut(s) 144, 528
BmrI ACTGGG 1 cut(s) 846
BmsI GCATC 1 cut(s) 81
BmuI ACTGGG 1 cut(s) 846
BpiI GAAGAC 1 cut(s) 642
Bpu14I TTCGAA 2 cut(s) 453, 781
BsaAI YACGTR 1 cut(s) 535
BsaBI GATNNNNATC 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 881
BsaJI CCNNGG 3 cut(s) 68, 142, 682
BsaWI WCCGGW 2 cut(s) 185, 941
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bse118I RCCGGY 3 cut(s) 185, 275, 941
Bse1I ACTGG 5 cut(s) 623, 701, 764, 841, 1068
Bse8I GATNNNNATC 1 cut(s) 24
BseBI CCWGG 2 cut(s) 144, 528
BseDI CCNNGG 3 cut(s) 68, 142, 682
BseGI GGATG 3 cut(s) 640, 814, 818
BseJI GATNNNNATC 1 cut(s) 24
BseMII CTCAG 1 cut(s) 938
BseNI ACTGG 5 cut(s) 623, 701, 764, 841, 1068
BseRI GAGGAG 2 cut(s) 119, 254
Bsh1236I CGCG 1 cut(s) 79
BshFI GGCC 1 cut(s) 279
BshTI ACCGGT 2 cut(s) 185, 941
BsiSI CCGG 3 cut(s) 186, 276, 942
BsmAI GTCTC 4 cut(s) 597, 827, 881, 1054
BsnI GGCC 1 cut(s) 279
Bso31I GGTCTC 1 cut(s) 881
Bsp119I TTCGAA 2 cut(s) 453, 781
Bsp143I GATC 5 cut(s) 25, 156, 391, 1048, 1078
Bsp19I CCATGG 1 cut(s) 682
BspACI CCGC 5 cut(s) 77, 213, 219, 884, 916
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 1 cut(s) 937
BspFNI CGCG 1 cut(s) 79
BspLI GGNNCC 3 cut(s) 158, 217, 235
BspMI ACCTGC 1 cut(s) 42
BspPI GGATC 4 cut(s) 20, 151, 164, 386
BspT104I TTCGAA 2 cut(s) 453, 781
BspTNI GGTCTC 1 cut(s) 881
BsrFI RCCGGY 3 cut(s) 185, 275, 941
BsrI ACTGG 5 cut(s) 623, 701, 764, 841, 1068
BssAI RCCGGY 3 cut(s) 185, 275, 941
BssECI CCNNGG 3 cut(s) 68, 142, 682
BssMI GATC 5 cut(s) 25, 156, 391, 1048, 1078
BssT1I CCWWGG 2 cut(s) 68, 682
Bst2UI CCWGG 2 cut(s) 144, 528
Bst4CI ACNGT 4 cut(s) 465, 668, 673, 1110
BstBAI YACGTR 1 cut(s) 535
BstBI TTCGAA 2 cut(s) 453, 781
BstC8I GCNNGC 3 cut(s) 277, 920, 934
BstDEI CTNAG 1 cut(s) 924
BstDSI CCRYGG 1 cut(s) 682
BstF5I GGATG 3 cut(s) 640, 814, 818
BstFNI CGCG 1 cut(s) 79
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 5 cut(s) 28, 159, 394, 1051, 1081
BstMAI GTCTC 4 cut(s) 597, 827, 881, 1054
BstMBI GATC 5 cut(s) 25, 156, 391, 1048, 1078
BstNI CCWGG 2 cut(s) 144, 528
BstSCI CCNGG 2 cut(s) 142, 526
BstSNI TACGTA 1 cut(s) 535
BstUI CGCG 1 cut(s) 79
BstV2I GAAGAC 1 cut(s) 642
BstX2I RGATCY 2 cut(s) 25, 156
BstYI RGATCY 2 cut(s) 25, 156
BsuRI GGCC 1 cut(s) 279
BtgI CCRYGG 1 cut(s) 682
BtsCI GGATG 3 cut(s) 640, 814, 818
BtsI GCAGTG 2 cut(s) 320, 382
BtsIMutI CAGTG 5 cut(s) 306, 320, 382, 694, 932
BveI ACCTGC 1 cut(s) 42
Cac8I GCNNGC 3 cut(s) 277, 920, 934
CfoI GCGC 1 cut(s) 375
Cfr10I RCCGGY 3 cut(s) 185, 275, 941
Csp6I GTAC 2 cut(s) 669, 767
CspAI ACCGGT 2 cut(s) 185, 941
CviAII CATG 5 cut(s) 7, 117, 597, 607, 683
CviQI GTAC 2 cut(s) 669, 767
DdeI CTNAG 1 cut(s) 924
DpnI GATC 5 cut(s) 27, 158, 393, 1050, 1080
DpnII GATC 5 cut(s) 25, 156, 391, 1048, 1078
DraI TTTAAA 1 cut(s) 202
EaeI YGGCCR 1 cut(s) 277
EciI GGCGGA 1 cut(s) 208
Eco105I TACGTA 1 cut(s) 535
Eco130I CCWWGG 2 cut(s) 68, 682
Eco31I GGTCTC 1 cut(s) 881
Eco57I CTGAAG 1 cut(s) 463
EcoRII CCWGG 2 cut(s) 142, 526
EcoT14I CCWWGG 2 cut(s) 68, 682
ErhI CCWWGG 2 cut(s) 68, 682
FaeI CATG 5 cut(s) 10, 120, 600, 610, 686
FatI CATG 5 cut(s) 6, 116, 596, 606, 682
FauNDI CATATG 3 cut(s) 50, 301, 349
FblI GTMKAC 1 cut(s) 615
Fnu4HI GCNGC 1 cut(s) 214
FokI GGATG 3 cut(s) 627, 821, 825
Fsp4HI GCNGC 1 cut(s) 214
FspBI CTAG 4 cut(s) 486, 584, 708, 1052
GlaI GCGC 1 cut(s) 374
GluI GCNGC 1 cut(s) 214
HaeIII GGCC 1 cut(s) 279
HapII CCGG 3 cut(s) 186, 276, 942
HhaI GCGC 1 cut(s) 375
Hin1II CATG 5 cut(s) 10, 120, 600, 610, 686
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HinfI GANTC 2 cut(s) 425, 756
HpaII CCGG 3 cut(s) 186, 276, 942
HphI GGTGA 1 cut(s) 956
Hpy166II GTNNAC 1 cut(s) 616
Hpy188I TCNGA 3 cut(s) 238, 655, 1075
Hpy188III TCNNGA 2 cut(s) 661, 731
Hpy8I GTNNAC 1 cut(s) 616
Hpy99I CGWCG 1 cut(s) 909
HpyAV CCTTC 7 cut(s) 232, 269, 424, 548, 780, 835, 850
HpyCH4III ACNGT 4 cut(s) 465, 668, 673, 1110
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 1 cut(s) 94
HpyF3I CTNAG 1 cut(s) 924
HpySE526I ACGT 1 cut(s) 534
Hsp92II CATG 5 cut(s) 10, 120, 600, 610, 686
HspAI GCGC 1 cut(s) 373
KroI GCCGGC 1 cut(s) 275
KroNI GCCGGC 1 cut(s) 277
Kzo9I GATC 5 cut(s) 25, 156, 391, 1048, 1078
LmnI GCTCC 3 cut(s) 221, 239, 709
LweI GCATC 1 cut(s) 81
MaeI CTAG 4 cut(s) 486, 584, 708, 1052
MaeII ACGT 1 cut(s) 534
MaeIII GTNAC 4 cut(s) 241, 304, 530, 1085
MalI GATC 5 cut(s) 27, 158, 393, 1050, 1080
MboI GATC 5 cut(s) 25, 156, 391, 1048, 1078
MboII GAAGA 2 cut(s) 35, 642
MflI RGATCY 2 cut(s) 25, 156
MluCI AATT 4 cut(s) 896, 909, 973, 983
MmeI TCCRAC 1 cut(s) 362
MnlI CCTC 6 cut(s) 140, 147, 275, 654, 741, 933
MroNI GCCGGC 1 cut(s) 275
MseI TTAA 3 cut(s) 201, 387, 570
MspA1I CMGCKG 1 cut(s) 213
MspI CCGG 3 cut(s) 186, 276, 942
MspR9I CCNGG 2 cut(s) 144, 528
MvaI CCWGG 2 cut(s) 144, 528
MvnI CGCG 1 cut(s) 79
NaeI GCCGGC 1 cut(s) 277
NcoI CCATGG 1 cut(s) 682
NdeI CATATG 3 cut(s) 50, 301, 349
NdeII GATC 5 cut(s) 25, 156, 391, 1048, 1078
NgoMIV GCCGGC 1 cut(s) 275
NlaIII CATG 5 cut(s) 10, 120, 600, 610, 686
NlaIV GGNNCC 3 cut(s) 158, 217, 235
NmeAIII GCCGAG 2 cut(s) 63, 991
NmuCI GTSAC 2 cut(s) 304, 1085
NspV TTCGAA 2 cut(s) 453, 781
PdiI GCCGGC 1 cut(s) 277
PfeI GAWTC 2 cut(s) 425, 756
PinAI ACCGGT 2 cut(s) 185, 941
PkrI GCNGC 1 cut(s) 215
Ppu21I YACGTR 1 cut(s) 535
PshBI ATTAAT 1 cut(s) 387
Psp6I CCWGG 2 cut(s) 142, 526
PspGI CCWGG 2 cut(s) 142, 526
PspN4I GGNNCC 3 cut(s) 158, 217, 235
PsuI RGATCY 2 cut(s) 25, 156
RsaI GTAC 2 cut(s) 670, 768
RsaNI GTAC 2 cut(s) 669, 767
SaqAI TTAA 3 cut(s) 201, 387, 570
SatI GCNGC 1 cut(s) 214
Sau3AI GATC 5 cut(s) 25, 156, 391, 1048, 1078
ScaI AGTACT 1 cut(s) 670
ScrFI CCNGG 2 cut(s) 144, 528
SfaNI GCATC 1 cut(s) 81
SfuI TTCGAA 2 cut(s) 453, 781
SgrAI CRCCGGYG 1 cut(s) 941
SnaBI TACGTA 1 cut(s) 535
Sse9I AATT 4 cut(s) 896, 909, 973, 983
SsiI CCGC 5 cut(s) 77, 213, 219, 884, 916
SspMI CTAG 4 cut(s) 486, 584, 708, 1052
StyD4I CCNGG 2 cut(s) 142, 526
StyI CCWWGG 2 cut(s) 68, 682
TaaI ACNGT 4 cut(s) 465, 668, 673, 1110
TaiI ACGT 1 cut(s) 537
TaqI TCGA 6 cut(s) 163, 453, 781, 801, 894, 907
TasI AATT 4 cut(s) 896, 909, 973, 983
TatI WGTACW 1 cut(s) 668
TauI GCSGC 1 cut(s) 216
TfiI GAWTC 2 cut(s) 425, 756
Tru1I TTAA 3 cut(s) 201, 387, 570
Tru9I TTAA 3 cut(s) 201, 387, 570
TscAI CASTG 5 cut(s) 313, 327, 382, 701, 932
TseFI GTSAC 2 cut(s) 304, 1085
Tsp45I GTSAC 2 cut(s) 304, 1085
TspDTI ATGAA 6 cut(s) 17, 36, 474, 585, 629, 729
TspGWI ACGGA 1 cut(s) 636
TspRI CASTG 5 cut(s) 313, 327, 382, 701, 932
VspI ATTAAT 1 cut(s) 387
XapI RAATTY 2 cut(s) 896, 909
XmiI GTMKAC 1 cut(s) 615
XspI CTAG 4 cut(s) 486, 584, 708, 1052
ZrmI AGTACT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.