Rmu_co8310765.1_g000001

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8310765.1
OG0000289
Physical Location & Seq
Reverse (-)
2 .. 815
814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8310765.1_g000001.1.cds

Sequence Viewer

Length: 814 bp
atggaagctgactcagtgatcagcggagagctcccacccgaaatcatatgcttccagatactcccaaggctaccgaccaagtttgtgatccgttgcagatgcgtctgcaaatcatggtcctctctcacccgcaacccttcttttctcaccgtccaccgtagcttccggtgcagcccttccactcacctcctcttcaccacgtcggacgactccacaaccacacttcaacactttcactctgtgaaactcaaccaagaagaaggagaaaagaatgttattaatccaacaacagacctctttagccttccagcaccgtcctattcctttctcggcggcacacatagtatcaacggcttgacgattttagccgatcaacttaatgccaaaacggtttatgttttcaatccctgtactgaacagattataactcttccccataccagccttgaagccgaattgtttacacaccatctcggattcagtgctgttacaaacgagtataaggttttccaagtgcattggtctggtaatgaggattacccgaattatgtgacttctctgaggttcaaaattttcactctgggtacaactacatggaggcacatagagttggactttccttttgatcctgaaaggctagactttgctaagaaaagtgtatgcctccatggaggcatacattggatgcatacgaatcagaagattatagttgcatttgatgttggagccgagagattcagagccaacatcccacttcccggagattgtgactccgggaatattgttgaagtgggtggatgtgtggctgtgtatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

271

Amino Acids

30.48

Weight (kDa)

6.09

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 425
AciI CCGC 3 cut(s) 24, 130, 333
AclWI GGATC 2 cut(s) 82, 620
AcsI RAATTY 1 cut(s) 570
AdeI CACNNNGTG 1 cut(s) 241
AfaI GTAC 2 cut(s) 412, 586
AfiI CCNNNNNNNGG 1 cut(s) 758
AgsI TTSAA 5 cut(s) 227, 403, 449, 568, 788
AjiI CACGTC 1 cut(s) 201
AluBI AGCT 3 cut(s) 8, 31, 162
AluI AGCT 3 cut(s) 8, 31, 162
Alw21I GWGCWC 1 cut(s) 33
AlwI GGATC 2 cut(s) 82, 620
ApeKI GCWGC 1 cut(s) 171
ApoI RAATTY 1 cut(s) 570
ArsI GACNNNNNNTTYG 2 cut(s) 605, 637
AseI ATTAAT 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 117
AsuC2I CCSGG 2 cut(s) 759, 775
AsuHPI GGTGA 4 cut(s) 118, 139, 176, 187
AvaII GGWCC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 183
BccI CCATC 1 cut(s) 477
BceAI ACGGC 1 cut(s) 367
BclI TGATCA 1 cut(s) 18
BcnI CCSGG 2 cut(s) 759, 775
BfaI CTAG 1 cut(s) 638
BisI GCNGC 2 cut(s) 172, 334
BlsI GCNGC 2 cut(s) 173, 335
Bme1390I CCNGG 2 cut(s) 759, 775
Bme18I GGWCC 1 cut(s) 117
BmgBI CACGTC 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 727
BmrFI CCNGG 2 cut(s) 759, 775
BmsI GCATC 2 cut(s) 89, 675
BpuMI CCSGG 2 cut(s) 759, 775
BsaJI CCNNGG 2 cut(s) 65, 667
BsaWI WCCGGW 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 758
BseDI CCNNGG 2 cut(s) 65, 667
BseGI GGATG 3 cut(s) 690, 747, 803
BseLI CCNNNNNNNGG 1 cut(s) 758
BseMII CTCAG 2 cut(s) 27, 551
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 183
BsgI GTGCAG 1 cut(s) 190
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 3 cut(s) 166, 759, 774
BslI CCNNNNNNNGG 1 cut(s) 758
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 4 cut(s) 18, 87, 370, 625
Bsp19I CCATGG 1 cut(s) 667
BspACI CCGC 3 cut(s) 24, 130, 333
BspCNI CTCAG 2 cut(s) 26, 552
BspLI GGNNCC 1 cut(s) 727
BspPI GGATC 2 cut(s) 82, 620
BssECI CCNNGG 2 cut(s) 65, 667
BssMI GATC 4 cut(s) 18, 87, 370, 625
BssT1I CCWWGG 2 cut(s) 65, 667
Bst4CI ACNGT 4 cut(s) 151, 158, 315, 391
Bst6I CTCTTC 2 cut(s) 197, 435
BstDEI CTNAG 3 cut(s) 13, 560, 648
BstDSI CCRYGG 1 cut(s) 667
BstF5I GGATG 3 cut(s) 690, 747, 803
BstKTI GATC 4 cut(s) 21, 90, 373, 628
BstMBI GATC 4 cut(s) 18, 87, 370, 625
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstSCI CCNGG 2 cut(s) 757, 773
BstV1I GCAGC 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 667
BtrI CACGTC 1 cut(s) 201
BtsCI GGATG 3 cut(s) 690, 747, 803
BtsIMutI CAGTG 2 cut(s) 21, 487
Cfr13I GGNCC 1 cut(s) 117
CseI GACGC 1 cut(s) 91
Csp6I GTAC 2 cut(s) 411, 585
CviAII CATG 3 cut(s) 114, 594, 668
CviQI GTAC 2 cut(s) 411, 585
DdeI CTNAG 3 cut(s) 13, 560, 648
DpnI GATC 4 cut(s) 20, 89, 372, 627
DpnII GATC 4 cut(s) 18, 87, 370, 625
DraIII CACNNNGTG 1 cut(s) 241
Eam1104I CTCTTC 2 cut(s) 197, 435
EarI CTCTTC 2 cut(s) 197, 435
Ecl136II GAGCTC 1 cut(s) 31
Eco130I CCWWGG 2 cut(s) 65, 667
Eco24I GRGCYC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 31
EcoT14I CCWWGG 2 cut(s) 65, 667
EcoT22I ATGCAT 1 cut(s) 690
EcoT38I GRGCYC 1 cut(s) 33
ErhI CCWWGG 2 cut(s) 65, 667
FaeI CATG 3 cut(s) 117, 597, 671
FatI CATG 3 cut(s) 113, 593, 667
FauI CCCGC 1 cut(s) 137
FauNDI CATATG 1 cut(s) 47
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 2 cut(s) 172, 334
FokI GGATG 3 cut(s) 697, 734, 810
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 2 cut(s) 172, 334
FspBI CTAG 1 cut(s) 638
GluI GCNGC 2 cut(s) 172, 334
HapII CCGG 3 cut(s) 166, 759, 774
HgaI GACGC 1 cut(s) 91
Hin1II CATG 3 cut(s) 117, 597, 671
HinfI GANTC 6 cut(s) 11, 209, 477, 694, 735, 770
HpaII CCGG 3 cut(s) 166, 759, 774
HphI GGTGA 4 cut(s) 118, 139, 176, 187
Hpy166II GTNNAC 2 cut(s) 154, 462
Hpy188I TCNGA 5 cut(s) 205, 476, 561, 699, 740
Hpy188III TCNNGA 2 cut(s) 55, 629
Hpy8I GTNNAC 2 cut(s) 154, 462
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 4 cut(s) 147, 186, 254, 314
HpyCH4III ACNGT 4 cut(s) 151, 158, 315, 391
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 6 cut(s) 96, 108, 171, 517, 688, 713
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 3 cut(s) 13, 560, 648
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 3 cut(s) 117, 597, 671
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 4 cut(s) 18, 87, 370, 625
LmnI GCTCC 2 cut(s) 36, 725
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 2 cut(s) 89, 675
MaeI CTAG 1 cut(s) 638
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 3 cut(s) 487, 550, 767
MalI GATC 4 cut(s) 20, 89, 372, 627
MboI GATC 4 cut(s) 18, 87, 370, 625
MboII GAAGA 4 cut(s) 184, 269, 422, 712
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 3 cut(s) 455, 544, 570
MlyI GAGTC 3 cut(s) 5, 203, 764
MmeI TCCRAC 4 cut(s) 183, 308, 591, 703
MnlI CCTC 9 cut(s) 130, 197, 200, 305, 526, 555, 591, 665, 674
Mph1103I ATGCAT 1 cut(s) 690
MseI TTAA 2 cut(s) 279, 378
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 3 cut(s) 166, 759, 774
MspR9I CCNGG 2 cut(s) 759, 775
MwoI GCNNNNNNNGC 1 cut(s) 168
NciI CCSGG 2 cut(s) 759, 775
NcoI CCATGG 1 cut(s) 667
NdeI CATATG 1 cut(s) 47
NdeII GATC 4 cut(s) 18, 87, 370, 625
NlaIII CATG 3 cut(s) 117, 597, 671
NlaIV GGNNCC 1 cut(s) 727
NmeAIII GCCGAG 2 cut(s) 309, 754
NmuCI GTSAC 2 cut(s) 550, 767
NsiI ATGCAT 1 cut(s) 690
PfeI GAWTC 3 cut(s) 477, 694, 735
PfoI TCCNGGA 2 cut(s) 757, 773
PkrI GCNGC 2 cut(s) 173, 335
PleI GAGTC 3 cut(s) 5, 203, 764
PpsI GAGTC 3 cut(s) 5, 203, 764
PshBI ATTAAT 1 cut(s) 279
PsiI TTATAA 1 cut(s) 425
Psp124BI GAGCTC 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 727
PspPI GGNCC 1 cut(s) 117
RsaI GTAC 2 cut(s) 412, 586
RsaNI GTAC 2 cut(s) 411, 585
SacI GAGCTC 1 cut(s) 33
SaqAI TTAA 2 cut(s) 279, 378
SatI GCNGC 2 cut(s) 172, 334
Sau3AI GATC 4 cut(s) 18, 87, 370, 625
Sau96I GGNCC 1 cut(s) 117
SchI GAGTC 3 cut(s) 5, 203, 764
ScrFI CCNGG 2 cut(s) 759, 775
SduI GDGCHC 1 cut(s) 33
SetI ASST 8 cut(s) 10, 33, 164, 189, 203, 297, 507, 566
SfaNI GCATC 2 cut(s) 89, 675
SinI GGWCC 1 cut(s) 117
Sse9I AATT 3 cut(s) 455, 544, 570
SsiI CCGC 3 cut(s) 24, 130, 333
SspI AATATT 1 cut(s) 781
SspMI CTAG 1 cut(s) 638
SstI GAGCTC 1 cut(s) 33
StyD4I CCNGG 2 cut(s) 757, 773
StyI CCWWGG 2 cut(s) 65, 667
TaaI ACNGT 4 cut(s) 151, 158, 315, 391
TaiI ACGT 1 cut(s) 203
TasI AATT 3 cut(s) 455, 544, 570
TatI WGTACW 1 cut(s) 410
TauI GCSGC 1 cut(s) 336
TfiI GAWTC 3 cut(s) 477, 694, 735
Tru1I TTAA 2 cut(s) 279, 378
Tru9I TTAA 2 cut(s) 279, 378
TscAI CASTG 2 cut(s) 21, 487
TseFI GTSAC 2 cut(s) 550, 767
TseI GCWGC 1 cut(s) 171
Tsp45I GTSAC 2 cut(s) 550, 767
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 2 cut(s) 21, 487
VpaK11BI GGWCC 1 cut(s) 117
VspI ATTAAT 1 cut(s) 279
XapI RAATTY 1 cut(s) 570
XspI CTAG 1 cut(s) 638
Zsp2I ATGCAT 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.