RLG00000005896

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000289
Physical Location & Seq
Reverse (-)
2611807 .. 2612790
984 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005896

Sequence Viewer

Length: 642 bp
ATGGCAACCCAAAAGACTTATATTGCAGGTTTAGTAGAGTTTAAGATTTTCACACTGGGTAAAGGTTCGTGGAGTGACATTGTGGTAGACTGGGATCAGCTGTCATCCGTTCCTCTTGGACCTTGGAACTTCTCCGATACTCAAAATGTATGTGTCCATGGGGCCATACACTGGCTCGCTAGTAGTTATAAGGCTATATTAGCTCTTGACATTGGAGAGGAGAGGTTCAGAATCATACGAGTGCCTAGTGAAGTTGAAAATGTATGGAGAATTATTGAAGTGGATGGATGTCTATGTATAGTATCATCAGTATGTTCCTGGATGATGGGTGTGATGTTGTGGATTTTGAAGGACTACGAACATCAAGCGTGGGTTAAGGAGACCGTCGCCCGTAGCCCTCCGGAATATCCTGCTTCTGACTTGCCTCTGGAATACCGTGCTCCTGACTTGCCTCTATGTACCATCCACACAGGTGAGCTCTTATTTGATGTTCGTCAAGACAAGTATCTCCAATTATATGACATGAAAAGTAAAAAGTATCGGAGGAGCGAAATCATTTTTCCCAAAATGTTGTGTGATCCTGTATTCAGATCGAATTATATCTCTAGTAGTTTTGATGATTGTATTATTCCCTTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

214

Amino Acids

24.55

Weight (kDa)

5.4

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 11 - 185 4e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 189
Acc36I ACCTGC 1 cut(s) 17
AccB7I CCANNNNNTGG 1 cut(s) 171
AccI GTMKAC 1 cut(s) 87
AccIII TCCGGA 1 cut(s) 400
AclWI GGATC 2 cut(s) 102, 572
AfaI GTAC 1 cut(s) 460
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 3 cut(s) 257, 278, 349
AjnI CCWGG 1 cut(s) 317
AleI CACNNNNGTG 1 cut(s) 471
AluBI AGCT 3 cut(s) 100, 203, 478
AluI AGCT 3 cut(s) 100, 203, 478
Alw21I GWGCWC 2 cut(s) 442, 480
Alw26I GTCTC 1 cut(s) 374
AlwI GGATC 2 cut(s) 102, 572
Aor13HI TCCGGA 1 cut(s) 400
AoxI GGCC 1 cut(s) 162
AspS9I GGNCC 2 cut(s) 119, 162
AsuHPI GGTGA 1 cut(s) 485
AvaII GGWCC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 480
Bbv12I GWGCWC 2 cut(s) 442, 480
BccI CCATC 3 cut(s) 278, 319, 470
BciT130I CCWGG 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 374
BfaI CTAG 3 cut(s) 180, 246, 606
BfuAI ACCTGC 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 319
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 2 cut(s) 119, 162
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 319
BmrI ACTGGG 2 cut(s) 65, 100
BmuI ACTGGG 2 cut(s) 65, 100
BsaI GGTCTC 1 cut(s) 374
BsaJI CCNNGG 2 cut(s) 122, 157
BsaWI WCCGGW 1 cut(s) 400
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse1I ACTGG 3 cut(s) 60, 95, 176
BseAI TCCGGA 1 cut(s) 400
BseBI CCWGG 1 cut(s) 319
BseDI CCNNGG 2 cut(s) 122, 157
BseGI GGATG 5 cut(s) 104, 289, 293, 327, 462
BseLI CCNNNNNNNGG 1 cut(s) 171
BseNI ACTGG 3 cut(s) 60, 95, 176
BseRI GAGGAG 2 cut(s) 233, 559
BshFI GGCC 1 cut(s) 164
BsiHKAI GWGCWC 2 cut(s) 442, 480
BsiSI CCGG 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 171
BsmAI GTCTC 1 cut(s) 374
BsnI GGCC 1 cut(s) 164
Bso31I GGTCTC 1 cut(s) 374
Bsp1286I GDGCHC 2 cut(s) 442, 480
Bsp13I TCCGGA 1 cut(s) 400
Bsp143I GATC 3 cut(s) 94, 577, 590
Bsp19I CCATGG 1 cut(s) 157
BspANI GGCC 1 cut(s) 164
BspEI TCCGGA 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 163
BspMI ACCTGC 1 cut(s) 17
BspPI GGATC 2 cut(s) 102, 572
BspTNI GGTCTC 1 cut(s) 374
BsrI ACTGG 3 cut(s) 60, 95, 176
BssECI CCNNGG 2 cut(s) 122, 157
BssMI GATC 3 cut(s) 94, 577, 590
BssT1I CCWWGG 2 cut(s) 122, 157
Bst2UI CCWGG 1 cut(s) 319
Bst4CI ACNGT 2 cut(s) 385, 437
BstC8I GCNNGC 1 cut(s) 177
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 5 cut(s) 104, 289, 293, 327, 462
BstKTI GATC 3 cut(s) 97, 580, 593
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 3 cut(s) 94, 577, 590
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 319
BstSCI CCNGG 1 cut(s) 317
BsuRI GGCC 1 cut(s) 164
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 5 cut(s) 104, 289, 293, 327, 462
BtsIMutI CAGTG 2 cut(s) 53, 169
BveI ACCTGC 1 cut(s) 17
Cac8I GCNNGC 1 cut(s) 177
Cfr13I GGNCC 2 cut(s) 119, 162
Csp6I GTAC 1 cut(s) 459
CviAII CATG 2 cut(s) 158, 523
CviJI RGCY 7 cut(s) 100, 164, 175, 194, 203, 396, 478
CviKI_1 RGCY 7 cut(s) 100, 164, 175, 194, 203, 396, 478
CviQI GTAC 1 cut(s) 459
DpnI GATC 3 cut(s) 96, 579, 592
DpnII GATC 3 cut(s) 94, 577, 590
Ecl136II GAGCTC 1 cut(s) 478
Eco130I CCWWGG 2 cut(s) 122, 157
Eco24I GRGCYC 1 cut(s) 480
Eco31I GGTCTC 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 119
Eco53kI GAGCTC 1 cut(s) 478
EcoICRI GAGCTC 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 317
EcoT14I CCWWGG 2 cut(s) 122, 157
EcoT38I GRGCYC 1 cut(s) 480
ErhI CCWWGG 2 cut(s) 122, 157
FaeI CATG 2 cut(s) 161, 526
FatI CATG 2 cut(s) 157, 522
FblI GTMKAC 1 cut(s) 87
FokI GGATG 5 cut(s) 91, 296, 300, 334, 449
FriOI GRGCYC 1 cut(s) 480
FspBI CTAG 3 cut(s) 180, 246, 606
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 401
Hin1II CATG 2 cut(s) 161, 526
HinfI GANTC 1 cut(s) 231
HpaII CCGG 1 cut(s) 401
HphI GGTGA 1 cut(s) 485
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 5 cut(s) 136, 230, 418, 543, 590
Hpy188III TCNNGA 5 cut(s) 206, 401, 428, 443, 497
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 1 cut(s) 389
HpyAV CCTTC 1 cut(s) 343
HpyCH4III ACNGT 2 cut(s) 385, 437
HpyCH4V TGCA 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
Hsp92II CATG 2 cut(s) 161, 526
Kpn2I TCCGGA 1 cut(s) 400
Kzo9I GATC 3 cut(s) 94, 577, 590
LmnI GCTCC 2 cut(s) 445, 546
MaeI CTAG 3 cut(s) 180, 246, 606
MaeIII GTNAC 1 cut(s) 74
MalI GATC 3 cut(s) 96, 579, 592
MboI GATC 3 cut(s) 94, 577, 590
MhlI GDGCHC 2 cut(s) 442, 480
MluCI AATT 3 cut(s) 270, 512, 595
MnlI CCTC 7 cut(s) 123, 211, 216, 408, 435, 462, 537
MroI TCCGGA 1 cut(s) 400
MseI TTAA 3 cut(s) 42, 375, 635
MslI CAYNNNNRTG 3 cut(s) 239, 310, 471
MspA1I CMGCKG 1 cut(s) 100
MspI CCGG 1 cut(s) 401
MspR9I CCNGG 1 cut(s) 319
MvaI CCWGG 1 cut(s) 319
MwoI GCNNNNNNNGC 1 cut(s) 200
NcoI CCATGG 1 cut(s) 157
NdeII GATC 3 cut(s) 94, 577, 590
NlaIII CATG 2 cut(s) 161, 526
NlaIV GGNNCC 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 74
OliI CACNNNNGTG 1 cut(s) 471
PfeI GAWTC 1 cut(s) 231
PflMI CCANNNNNTGG 1 cut(s) 171
PfoI TCCNGGA 1 cut(s) 317
PsiI TTATAA 1 cut(s) 189
Psp124BI GAGCTC 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 317
PspGI CCWGG 1 cut(s) 317
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 2 cut(s) 119, 162
PvuII CAGCTG 1 cut(s) 100
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
RseI CAYNNNNRTG 3 cut(s) 239, 310, 471
SacI GAGCTC 1 cut(s) 480
SaqAI TTAA 3 cut(s) 42, 375, 635
Sau3AI GATC 3 cut(s) 94, 577, 590
Sau96I GGNCC 2 cut(s) 119, 162
ScrFI CCNGG 1 cut(s) 319
SduI GDGCHC 2 cut(s) 442, 480
SetI ASST 8 cut(s) 31, 67, 102, 124, 205, 227, 475, 480
SinI GGWCC 1 cut(s) 119
SmiMI CAYNNNNRTG 3 cut(s) 239, 310, 471
Sse9I AATT 3 cut(s) 270, 512, 595
SspMI CTAG 3 cut(s) 180, 246, 606
SstI GAGCTC 1 cut(s) 480
StyD4I CCNGG 1 cut(s) 317
StyI CCWWGG 2 cut(s) 122, 157
TaaI ACNGT 2 cut(s) 385, 437
TaqI TCGA 1 cut(s) 593
TasI AATT 3 cut(s) 270, 512, 595
TfiI GAWTC 1 cut(s) 231
Tru1I TTAA 3 cut(s) 42, 375, 635
Tru9I TTAA 3 cut(s) 42, 375, 635
TscAI CASTG 2 cut(s) 60, 176
TseFI GTSAC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 539
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 2 cut(s) 60, 176
Van91I CCANNNNNTGG 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 3 cut(s) 180, 246, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.