MD11G1124500.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000289
Physical Location & Seq
Reverse (-)
11440861 .. 11442156
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1124500.v1.1.491

Sequence Viewer

Length: 1296 bp
ATGGAATCATCAACTGGTCCAGAGCTCCCCAGCCAAATTACATGCTTCGAGATACTCCCAAGGCTACCGTCTAAGTCTTTGATGCGCTTCAAATGCGTATGCAAGTCTTGGTCCTCTATCACCCAAAACCCTTCCTTTGTTGAGGCCCATCACCACTTTGGACGCAACAAGTACGCACACCTCCTTCTCACCACTTGGGACCAAGCCACAAGCCAGCAACACTTCTTCTCCTCACAAATCGACCAACAAGGAAGTCTTACACCCGCCACACATGTTCTAACCCTTCCAACGCTGCGAACCAATGGATGTCTCTATACTGCACAAAGTATCAATGGCTTGGTATGTCTGTACCTTCAAGTAAACCCTGTTCAAATCAATCAAGTAAGCTCCGTTCACAATGCCTCAATTTCCAATCAAATTGGTCATGGAAACCCCGTTCACATATTTAACCCTTGCACACGAGAGTCTATTGCCCTTCCCAACACTTCATCCGCATCTAGCACAACCTACGTTACACATAATTTTGGGTTTGTAAGAGGAGAGTCTATTGCTCTTCCCCACACTTCATCCGCATCTAGCACAACCTATGTTACACATCATTTTGGGTTTAGTCCTCTTACAAACAAGTACAAGGTTCTCCAAGTGCAAAAGTTTGTCCGAGCTGGGAGTATACATTTTATGTTCAATATATTCACATTGGGGATAAATTTGTGGAAACGCATAGAGGCGGACCTTAATAATCTCCCTTTTGATCCTCATAGCTGCCTGTTTTATGAAGCAAGCGTGTGCGTCAATGGGGCCATACATTGGATGAATGGGTCACAAAATATGATTGTGGGTTTCGACATTGAAGATGAAAAATTTAGTAGAGTGATCCAACTTCCTAAAGATTATAATCTTTGTAGGGTTTATCAGTTTATGGTTGAAGTGGGTGGACGTTTGGCTCTAGGCGACAGGGTGCAGTTGATGAGGCAAAATATAATGAGGTTATGGATTTTGAACGACTATGAAAATCAAGTGTGGGTTAAGGAGTCTTTCAAATTTCCCATTCATTGGAGGGAGTTGGGATACCCTTTACGTTTCTATACCATTCACACTGGTGAGCTCCTCGTCCAATTTCCCAGATTAAATACGGACCAGGTCGACCTTGCGTGTATGAGGGTGCATCTGTACGACATGAAGAGTGAAAGTTTTAGGAGTTATGAGATTGTTTTGCCCGCAGAATGGACATTTCGGAACAATACTCGGTTGAAGGTACTTACTAGTTATGAGGATAGCATTGTTCCATTAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

432

Amino Acids

49.4

Weight (kDa)

8.47

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 69 - 406 1.8e-35 F-box associated beta propeller domain
FBA_1 PF07734 195 - 342 1e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 894
AccB7I CCANNNNNTGG 2 cut(s) 807, 1053
AccI GTMKAC 2 cut(s) 670, 1143
AciI CCGC 5 cut(s) 264, 492, 570, 728, 1218
AclWI GGATC 2 cut(s) 746, 868
AcsI RAATTY 3 cut(s) 706, 860, 1040
AfaI GTAC 5 cut(s) 173, 350, 629, 1172, 1257
AfiI CCNNNNNNNGG 3 cut(s) 807, 1053, 1224
AflIII ACRYGT 1 cut(s) 271
AgsI TTSAA 9 cut(s) 91, 356, 371, 685, 851, 926, 1000, 1039, 1252
AhlI ACTAGT 1 cut(s) 1262
AjnI CCWGG 1 cut(s) 1137
AleI CACNNNNGTG 1 cut(s) 1098
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 5 cut(s) 25, 387, 662, 762, 1105
AluI AGCT 5 cut(s) 25, 387, 662, 762, 1105
Alw21I GWGCWC 2 cut(s) 27, 1107
Alw26I GTCTC 1 cut(s) 314
AlwI GGATC 2 cut(s) 746, 868
AoxI GGCC 2 cut(s) 144, 798
ApeKI GCWGC 2 cut(s) 292, 762
ApoI RAATTY 3 cut(s) 706, 860, 1040
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 7 cut(s) 17, 111, 145, 199, 730, 798, 1135
AsuHPI GGTGA 4 cut(s) 112, 143, 181, 1112
AvaII GGWCC 5 cut(s) 17, 111, 199, 730, 1135
BanII GRGCYC 2 cut(s) 27, 1107
BauI CACGAG 1 cut(s) 459
Bbv12I GWGCWC 2 cut(s) 27, 1107
BbvI GCAGC 2 cut(s) 279, 749
BccI CCATC 1 cut(s) 156
BciT130I CCWGG 1 cut(s) 1139
BciVI GTATCC 1 cut(s) 1061
BcoDI GTCTC 1 cut(s) 314
BcuI ACTAGT 1 cut(s) 1262
BfaI CTAG 4 cut(s) 498, 576, 947, 1263
BfuI GTATCC 1 cut(s) 1061
BisI GCNGC 2 cut(s) 293, 763
BlsI GCNGC 2 cut(s) 294, 764
Bme1390I CCNGG 1 cut(s) 1139
Bme18I GGWCC 5 cut(s) 17, 111, 199, 730, 1135
BmgT120I GGNCC 7 cut(s) 17, 111, 145, 199, 730, 798, 1135
BmiI GGNNCC 2 cut(s) 200, 799
BmrFI CCNGG 1 cut(s) 1139
BmsI GCATC 4 cut(s) 72, 503, 581, 1174
BsaBI GATNNNNATC 1 cut(s) 894
BsaJI CCNNGG 1 cut(s) 59
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 3 cut(s) 807, 1053, 1224
Bse1I ACTGG 2 cut(s) 19, 1102
Bse8I GATNNNNATC 1 cut(s) 894
BseBI CCWGG 1 cut(s) 1139
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 4 cut(s) 311, 488, 566, 816
BseJI GATNNNNATC 1 cut(s) 894
BseLI CCNNNNNNNGG 3 cut(s) 807, 1053, 1224
BseNI ACTGG 2 cut(s) 19, 1102
BseRI GAGGAG 3 cut(s) 220, 552, 1097
BseXI GCAGC 2 cut(s) 279, 749
BseYI CCCAGC 2 cut(s) 29, 662
BsgI GTGCAG 2 cut(s) 303, 980
BshFI GGCC 2 cut(s) 146, 800
BsiHKAI GWGCWC 2 cut(s) 27, 1107
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 3 cut(s) 807, 1053, 1224
BsmAI GTCTC 1 cut(s) 314
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 2 cut(s) 146, 800
Bsp1286I GDGCHC 2 cut(s) 27, 1107
Bsp143I GATC 2 cut(s) 751, 873
BspACI CCGC 5 cut(s) 264, 492, 570, 728, 1218
BspANI GGCC 2 cut(s) 146, 800
BspLI GGNNCC 2 cut(s) 200, 799
BspPI GGATC 2 cut(s) 746, 868
BspQI GCTCTTC 1 cut(s) 558
BsrI ACTGG 2 cut(s) 19, 1102
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 2 cut(s) 751, 873
BssNAI GTATAC 1 cut(s) 671
BssSI CACGAG 1 cut(s) 459
BssT1I CCWWGG 1 cut(s) 59
Bst1107I GTATAC 1 cut(s) 671
Bst2BI CACGAG 1 cut(s) 459
Bst2UI CCWGG 1 cut(s) 1139
Bst4CI ACNGT 1 cut(s) 69
Bst6I CTCTTC 2 cut(s) 558, 1175
BstC8I GCNNGC 3 cut(s) 215, 781, 1218
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 4 cut(s) 311, 488, 566, 816
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 2 cut(s) 754, 876
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 2 cut(s) 751, 873
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstNI CCWGG 1 cut(s) 1139
BstNSI RCATGY 2 cut(s) 45, 275
BstSCI CCNGG 1 cut(s) 1137
BstV1I GCAGC 2 cut(s) 279, 749
BstZ17I GTATAC 1 cut(s) 671
BsuI GTATCC 1 cut(s) 1061
BsuRI GGCC 2 cut(s) 146, 800
BtsCI GGATG 4 cut(s) 311, 488, 566, 816
BtsIMutI CAGTG 1 cut(s) 1095
Cac8I GCNNGC 3 cut(s) 215, 781, 1218
CfoI GCGC 1 cut(s) 87
Cfr13I GGNCC 7 cut(s) 17, 111, 145, 199, 730, 798, 1135
CseI GACGC 2 cut(s) 171, 778
CsiI ACCWGGT 1 cut(s) 1137
Csp6I GTAC 5 cut(s) 172, 349, 628, 1171, 1256
CviAII CATG 4 cut(s) 42, 272, 425, 1177
CviQI GTAC 5 cut(s) 172, 349, 628, 1171, 1256
DdeI CTNAG 1 cut(s) 72
DpnI GATC 2 cut(s) 753, 875
DpnII GATC 2 cut(s) 751, 873
Eam1104I CTCTTC 2 cut(s) 558, 1175
EarI CTCTTC 2 cut(s) 558, 1175
EciI GGCGGA 1 cut(s) 743
Ecl136II GAGCTC 2 cut(s) 25, 1105
Eco130I CCWWGG 1 cut(s) 59
Eco24I GRGCYC 2 cut(s) 27, 1107
Eco47I GGWCC 5 cut(s) 17, 111, 199, 730, 1135
Eco53kI GAGCTC 2 cut(s) 25, 1105
EcoICRI GAGCTC 2 cut(s) 25, 1105
EcoRII CCWGG 1 cut(s) 1137
EcoT14I CCWWGG 1 cut(s) 59
EcoT38I GRGCYC 2 cut(s) 27, 1107
ErhI CCWWGG 1 cut(s) 59
FaeI CATG 4 cut(s) 45, 275, 428, 1180
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FaqI GGGAC 1 cut(s) 212
FatI CATG 4 cut(s) 41, 271, 424, 1176
FauI CCCGC 2 cut(s) 271, 1225
FblI GTMKAC 2 cut(s) 670, 1143
Fnu4HI GCNGC 2 cut(s) 293, 763
FokI GGATG 4 cut(s) 318, 475, 553, 823
FriOI GRGCYC 2 cut(s) 27, 1107
Fsp4HI GCNGC 2 cut(s) 293, 763
FspBI CTAG 4 cut(s) 498, 576, 947, 1263
GlaI GCGC 1 cut(s) 86
GluI GCNGC 2 cut(s) 293, 763
GsaI CCCAGC 2 cut(s) 33, 666
HaeIII GGCC 2 cut(s) 146, 800
HgaI GACGC 2 cut(s) 171, 778
HhaI GCGC 1 cut(s) 87
Hin1II CATG 4 cut(s) 45, 275, 428, 1180
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HincII GTYRAC 1 cut(s) 1144
HindII GTYRAC 1 cut(s) 1144
HinfI GANTC 4 cut(s) 5, 464, 542, 1031
HphI GGTGA 4 cut(s) 112, 143, 181, 1112
Hpy166II GTNNAC 6 cut(s) 361, 394, 439, 671, 935, 1144
Hpy188I TCNGA 2 cut(s) 659, 1236
Hpy188III TCNNGA 2 cut(s) 20, 49
Hpy8I GTNNAC 6 cut(s) 361, 394, 439, 671, 935, 1144
HpyAV CCTTC 6 cut(s) 141, 194, 293, 362, 485, 1246
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4IV ACGT 3 cut(s) 510, 937, 1078
HpyCH4V TGCA 6 cut(s) 102, 320, 456, 646, 961, 1165
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 3 cut(s) 510, 937, 1078
Hsp92II CATG 4 cut(s) 45, 275, 428, 1180
HspAI GCGC 1 cut(s) 85
Kzo9I GATC 2 cut(s) 751, 873
LguI GCTCTTC 1 cut(s) 558
LmnI GCTCC 3 cut(s) 30, 392, 1110
Lsp1109I GCAGC 2 cut(s) 279, 749
LweI GCATC 4 cut(s) 72, 503, 581, 1174
MabI ACCWGGT 1 cut(s) 1137
MaeI CTAG 4 cut(s) 498, 576, 947, 1263
MaeII ACGT 3 cut(s) 510, 937, 1078
MaeIII GTNAC 3 cut(s) 511, 589, 819
MalI GATC 2 cut(s) 753, 875
MboI GATC 2 cut(s) 751, 873
MboII GAAGA 4 cut(s) 217, 545, 863, 1192
MhlI GDGCHC 2 cut(s) 27, 1107
MluCI AATT 8 cut(s) 36, 405, 417, 520, 706, 860, 1040, 1115
MlyI GAGTC 3 cut(s) 473, 551, 1040
MmeI TCCRAC 2 cut(s) 311, 901
MseI TTAA 5 cut(s) 447, 735, 1026, 1127, 1289
MslI CAYNNNNRTG 2 cut(s) 1098, 1291
MspR9I CCNGG 1 cut(s) 1139
MvaI CCWGG 1 cut(s) 1139
MwoI GCNNNNNNNGC 1 cut(s) 93
NdeII GATC 2 cut(s) 751, 873
NlaIII CATG 4 cut(s) 45, 275, 428, 1180
NlaIV GGNNCC 2 cut(s) 200, 799
NmuCI GTSAC 1 cut(s) 819
NspI RCATGY 2 cut(s) 45, 275
OliI CACNNNNGTG 1 cut(s) 1098
PciI ACATGT 1 cut(s) 271
PciSI GCTCTTC 1 cut(s) 558
PfeI GAWTC 1 cut(s) 5
PflFI GACNNNGTC 1 cut(s) 1139
PflMI CCANNNNNTGG 2 cut(s) 807, 1053
PkrI GCNGC 2 cut(s) 294, 764
PleI GAGTC 3 cut(s) 472, 550, 1039
PpsI GAGTC 3 cut(s) 472, 550, 1039
PscI ACATGT 1 cut(s) 271
PsiI TTATAA 1 cut(s) 894
Psp124BI GAGCTC 2 cut(s) 27, 1107
Psp6I CCWGG 1 cut(s) 1137
PspFI CCCAGC 2 cut(s) 29, 662
PspGI CCWGG 1 cut(s) 1137
PspN4I GGNNCC 2 cut(s) 200, 799
PspPI GGNCC 7 cut(s) 17, 111, 145, 199, 730, 798, 1135
PsrI GAACNNNNNNTAC 4 cut(s) 351, 375, 383, 407
PsyI GACNNNGTC 1 cut(s) 1139
RsaI GTAC 5 cut(s) 173, 350, 629, 1172, 1257
RsaNI GTAC 5 cut(s) 172, 349, 628, 1171, 1256
RseI CAYNNNNRTG 2 cut(s) 1098, 1291
SacI GAGCTC 2 cut(s) 27, 1107
SalI GTCGAC 1 cut(s) 1142
SapI GCTCTTC 1 cut(s) 558
SaqAI TTAA 5 cut(s) 447, 735, 1026, 1127, 1289
SatI GCNGC 2 cut(s) 293, 763
Sau3AI GATC 2 cut(s) 751, 873
Sau96I GGNCC 7 cut(s) 17, 111, 145, 199, 730, 798, 1135
SchI GAGTC 3 cut(s) 473, 551, 1040
ScrFI CCNGG 1 cut(s) 1139
SduI GDGCHC 2 cut(s) 27, 1107
SexAI ACCWGGT 1 cut(s) 1137
SfaNI GCATC 4 cut(s) 72, 503, 581, 1174
SinI GGWCC 5 cut(s) 17, 111, 199, 730, 1135
SmiMI CAYNNNNRTG 2 cut(s) 1098, 1291
SpeI ACTAGT 1 cut(s) 1262
Sse9I AATT 8 cut(s) 36, 405, 417, 520, 706, 860, 1040, 1115
SsiI CCGC 5 cut(s) 264, 492, 570, 728, 1218
SspMI CTAG 4 cut(s) 498, 576, 947, 1263
SstI GAGCTC 2 cut(s) 27, 1107
StyD4I CCNGG 1 cut(s) 1137
StyI CCWWGG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 69
TaiI ACGT 3 cut(s) 513, 940, 1081
TaqI TCGA 4 cut(s) 48, 240, 843, 1143
TasI AATT 8 cut(s) 36, 405, 417, 520, 706, 860, 1040, 1115
TatI WGTACW 1 cut(s) 627
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 5 cut(s) 447, 735, 1026, 1127, 1289
Tru9I TTAA 5 cut(s) 447, 735, 1026, 1127, 1289
TscAI CASTG 1 cut(s) 1102
TseFI GTSAC 1 cut(s) 819
TseI GCWGC 2 cut(s) 292, 762
Tsp45I GTSAC 1 cut(s) 819
TspDTI ATGAA 8 cut(s) 477, 555, 789, 827, 870, 1023, 1040, 1193
TspGWI ACGGA 2 cut(s) 379, 1148
TspRI CASTG 1 cut(s) 1102
Tth111I GACNNNGTC 1 cut(s) 1139
Van91I CCANNNNNTGG 2 cut(s) 807, 1053
VpaK11BI GGWCC 5 cut(s) 17, 111, 199, 730, 1135
XapI RAATTY 3 cut(s) 706, 860, 1040
XceI RCATGY 2 cut(s) 45, 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 155
XmiI GTMKAC 2 cut(s) 670, 1143
XspI CTAG 4 cut(s) 498, 576, 947, 1263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.