RLG00000019741

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000289
Physical Location & Seq
Forward (+)
56173553 .. 56174389
837 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019741

Sequence Viewer

Length: 837 bp
ATGCCTACAGAATATTACAACATTGCAAAGCTTCCCATTGACATCATATTGTTTGAGATATTCTCAAGATTACCGGTCAAGTCCTTGATACGGTTTAGGTGCGTAGGCAGATTTTGGTCCTCCCTCATCCGCCATCCTATCTTTGTCAGAACCTACCAAAAGTTACAGACTCAATCATGCCATAACCACCAACTCCTTCTCAGATTTTGGAACCCAGTCACGAGTCGGTGGCACTTGCTCTCCGCACAACTCAACCAAGAAGGGAGTATTAGCACCACCGACATCCTTCTAAGCCATCATGGACGGTTAGTATGCTCCAATATGGTAAGTATCAATGGCTTAATCTGTGTTTATAATAAAGAGGACCTAGCTGATGATGATAATCGTCTTCATCATCATGCACCCAATCAGCTGGACAATCCCGTTATATTTAACCTCTGCACCCGAGAGTCTATTACTGTTCCCCATGCCTTAAATACTAGCCAGAGCCACTACTTGGTTCATTCGACTTGCATTGGGTTCAGTCCTCAGACAAACGAGAATAAGGTTCTCCAACTACTAGTGCGGCGCCGTCAAACCAACGAAAGCAGTTTCATATTCAAGATTTTCACTCTTGGTGATGCTAGTACATGGAGGCATCTAGAGATAGAAGACAAAGACTTCGATGATCTTGCTCTTGATTGTCAAAATTTACAGTTTAAGCAGAGATCTGTGTTCCTCCAGGGGGCCAGACATTGGCTGCAAACGAATATTAAGGATCAACTTGTTATATTAGTTTTTGACTTTGAACAAGAGCTAGCGATTCAAAGAAATCCCATTTGCTCAAGAATATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

279

Amino Acids

32.49

Weight (kDa)

8.14

Isoelectric Point (pI)

58.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 10 - 49 1.4e-06 F-box domain
FBA_3 PF08268 76 - 265 7.1e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 354, 835
AccB1I GGYRCC 1 cut(s) 567
AccB7I CCANNNNNTGG 2 cut(s) 496, 735
AciI CCGC 3 cut(s) 130, 243, 565
AclWI GGATC 1 cut(s) 765
AcsI RAATTY 1 cut(s) 688
AcyI GRCGYC 1 cut(s) 568
AfaI GTAC 1 cut(s) 628
AfiI CCNNNNNNNGG 4 cut(s) 90, 496, 724, 735
AgeI ACCGGT 1 cut(s) 73
AgsI TTSAA 3 cut(s) 601, 788, 806
AhlI ACTAGT 1 cut(s) 559
AjnI CCWGG 1 cut(s) 720
AluBI AGCT 4 cut(s) 31, 371, 412, 796
AluI AGCT 4 cut(s) 31, 371, 412, 796
AlwI GGATC 1 cut(s) 765
Ama87I CYCGRG 1 cut(s) 444
AoxI GGCC 1 cut(s) 726
ApeKI GCWGC 1 cut(s) 739
ApoI RAATTY 1 cut(s) 688
ArsI GACNNNNNNTTYG 2 cut(s) 644, 676
AsiGI ACCGGT 1 cut(s) 73
AspLEI GCGC 1 cut(s) 570
AspS9I GGNCC 3 cut(s) 117, 364, 726
AsuHPI GGTGA 1 cut(s) 629
AsuNHI GCTAGC 1 cut(s) 796
AvaI CYCGRG 1 cut(s) 444
AvaII GGWCC 2 cut(s) 117, 364
BanI GGYRCC 1 cut(s) 567
BauI CACGAG 1 cut(s) 220
BbsI GAAGAC 2 cut(s) 380, 657
BbvI GCAGC 1 cut(s) 726
BccI CCATC 2 cut(s) 141, 303
BceAI ACGGC 1 cut(s) 555
BcgI CGANNNNNNTGC 2 cut(s) 653, 687
BciT130I CCWGG 1 cut(s) 722
BcuI ACTAGT 1 cut(s) 559
BfaI CTAG 6 cut(s) 368, 480, 560, 624, 641, 797
BfmI CTRYAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 571
BglII AGATCT 1 cut(s) 707
BisI GCNGC 2 cut(s) 566, 740
BlsI GCNGC 2 cut(s) 567, 741
Bme1390I CCNGG 1 cut(s) 722
Bme18I GGWCC 2 cut(s) 117, 364
BmeT110I CYCGRG 1 cut(s) 444
BmgT120I GGNCC 3 cut(s) 117, 364, 726
BmiI GGNNCC 3 cut(s) 212, 569, 727
BmrFI CCNGG 1 cut(s) 722
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 2 cut(s) 610, 646
BmtI GCTAGC 1 cut(s) 800
BmuI ACTGGG 1 cut(s) 209
BpiI GAAGAC 2 cut(s) 380, 657
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpmI CTGGAG 1 cut(s) 704
BpuEI CTTGAG 2 cut(s) 49, 808
BsaBI GATNNNNATC 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 568
BsaJI CCNNGG 1 cut(s) 721
BsaWI WCCGGW 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 496, 724, 735
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 21
Bse8I GATNNNNATC 1 cut(s) 381
BseBI CCWGG 1 cut(s) 722
BseDI CCNNGG 1 cut(s) 721
BseGI GGATG 3 cut(s) 126, 133, 282
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 4 cut(s) 90, 496, 724, 735
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 2 cut(s) 214, 542
BseNI ACTGG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 726
BsgI GTGCAG 1 cut(s) 424
BshFI GGCC 1 cut(s) 728
BshNI GGYRCC 1 cut(s) 567
BshTI ACCGGT 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 444
BsiSI CCGG 1 cut(s) 74
BslI CCNNNNNNNGG 4 cut(s) 90, 496, 724, 735
BsnI GGCC 1 cut(s) 728
BsoBI CYCGRG 1 cut(s) 444
Bsp143I GATC 3 cut(s) 667, 707, 757
BspACI CCGC 3 cut(s) 130, 243, 565
BspANI GGCC 1 cut(s) 728
BspCNI CTCAG 2 cut(s) 213, 541
BspLI GGNNCC 3 cut(s) 212, 569, 727
BspOI GCTAGC 1 cut(s) 800
BspPI GGATC 1 cut(s) 765
BspT107I GGYRCC 1 cut(s) 567
BsrDI GCAATG 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 721
BssMI GATC 3 cut(s) 667, 707, 757
BssNI GRCGYC 1 cut(s) 568
BssSI CACGAG 1 cut(s) 220
Bst2BI CACGAG 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 722
Bst4CI ACNGT 4 cut(s) 93, 306, 460, 696
BstACI GRCGYC 1 cut(s) 568
BstC8I GCNNGC 1 cut(s) 798
BstDEI CTNAG 3 cut(s) 200, 290, 528
BstF5I GGATG 3 cut(s) 126, 133, 282
BstH2I RGCGCY 1 cut(s) 571
BstHHI GCGC 1 cut(s) 570
BstKTI GATC 3 cut(s) 670, 710, 760
BstMBI GATC 3 cut(s) 667, 707, 757
BstNI CCWGG 1 cut(s) 722
BstSCI CCNGG 1 cut(s) 720
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 726
BstV2I GAAGAC 2 cut(s) 380, 657
BstX2I RGATCY 1 cut(s) 707
BstXI CCANNNNNNTGG 1 cut(s) 412
BstYI RGATCY 1 cut(s) 707
BsuRI GGCC 1 cut(s) 728
BtsCI GGATG 3 cut(s) 126, 133, 282
Cac8I GCNNGC 1 cut(s) 798
CfoI GCGC 1 cut(s) 570
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 3 cut(s) 117, 364, 726
Csp6I GTAC 1 cut(s) 627
CspAI ACCGGT 1 cut(s) 73
CviAII CATG 5 cut(s) 177, 299, 398, 467, 630
CviQI GTAC 1 cut(s) 627
DdeI CTNAG 3 cut(s) 200, 290, 528
DinI GGCGCC 1 cut(s) 569
DpnI GATC 3 cut(s) 669, 709, 759
DpnII GATC 3 cut(s) 667, 707, 757
EciI GGCGGA 1 cut(s) 119
Eco47I GGWCC 2 cut(s) 117, 364
Eco88I CYCGRG 1 cut(s) 444
EcoO109I RGGNCCY 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 720
EgeI GGCGCC 1 cut(s) 569
EheI GGCGCC 1 cut(s) 569
FaeI CATG 5 cut(s) 180, 302, 401, 470, 633
FatI CATG 5 cut(s) 176, 298, 397, 466, 629
Fnu4HI GCNGC 2 cut(s) 566, 740
FokI GGATG 3 cut(s) 113, 120, 269
Fsp4HI GCNGC 2 cut(s) 566, 740
FspBI CTAG 6 cut(s) 368, 480, 560, 624, 641, 797
GlaI GCGC 1 cut(s) 569
GluI GCNGC 2 cut(s) 566, 740
GsuI CTGGAG 1 cut(s) 704
HaeII RGCGCY 1 cut(s) 571
HaeIII GGCC 1 cut(s) 728
HapII CCGG 1 cut(s) 74
HhaI GCGC 1 cut(s) 570
Hin1I GRCGYC 1 cut(s) 568
Hin1II CATG 5 cut(s) 180, 302, 401, 470, 633
Hin6I GCGC 1 cut(s) 568
HinP1I GCGC 1 cut(s) 568
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 4 cut(s) 169, 223, 449, 802
HpaII CCGG 1 cut(s) 74
HphI GGTGA 1 cut(s) 629
Hpy188I TCNGA 3 cut(s) 149, 203, 531
Hpy188III TCNNGA 6 cut(s) 66, 220, 601, 641, 677, 825
HpyAV CCTTC 3 cut(s) 206, 254, 296
HpyCH4III ACNGT 4 cut(s) 93, 306, 460, 696
HpyCH4V TGCA 5 cut(s) 26, 401, 441, 513, 742
HpyF3I CTNAG 3 cut(s) 200, 290, 528
Hsp92I GRCGYC 1 cut(s) 568
Hsp92II CATG 5 cut(s) 180, 302, 401, 470, 633
HspAI GCGC 1 cut(s) 568
KasI GGCGCC 1 cut(s) 567
Kzo9I GATC 3 cut(s) 667, 707, 757
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 7 cut(s) 87, 228, 398, 497, 707, 734, 742
Lsp1109I GCAGC 1 cut(s) 726
LweI GCATC 2 cut(s) 610, 646
MaeI CTAG 6 cut(s) 368, 480, 560, 624, 641, 797
MaeIII GTNAC 2 cut(s) 162, 217
MalI GATC 3 cut(s) 669, 709, 759
MboI GATC 3 cut(s) 667, 707, 757
MboII GAAGA 2 cut(s) 380, 662
MflI RGATCY 1 cut(s) 707
MluCI AATT 1 cut(s) 688
Mly113I GGCGCC 1 cut(s) 568
MlyI GAGTC 3 cut(s) 163, 232, 458
MmeI TCCRAC 1 cut(s) 577
MnlI CCTC 7 cut(s) 130, 134, 355, 446, 537, 627, 728
MseI TTAA 5 cut(s) 341, 432, 473, 699, 753
MslI CAYNNNNRTG 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 412
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 722
MvaI CCWGG 1 cut(s) 722
NarI GGCGCC 1 cut(s) 568
NdeII GATC 3 cut(s) 667, 707, 757
NheI GCTAGC 1 cut(s) 796
NlaIII CATG 5 cut(s) 180, 302, 401, 470, 633
NlaIV GGNNCC 3 cut(s) 212, 569, 727
NmuCI GTSAC 1 cut(s) 217
PfeI GAWTC 1 cut(s) 802
PflMI CCANNNNNTGG 2 cut(s) 496, 735
PinAI ACCGGT 1 cut(s) 73
PkrI GCNGC 2 cut(s) 567, 741
PleI GAGTC 3 cut(s) 163, 231, 457
PluTI GGCGCC 1 cut(s) 571
PpsI GAGTC 3 cut(s) 163, 231, 457
PpuMI RGGWCCY 1 cut(s) 364
PsiI TTATAA 2 cut(s) 354, 835
Psp5II RGGWCCY 1 cut(s) 364
Psp6I CCWGG 1 cut(s) 720
PspGI CCWGG 1 cut(s) 720
PspN4I GGNNCC 3 cut(s) 212, 569, 727
PspPI GGNCC 3 cut(s) 117, 364, 726
PspPPI RGGWCCY 1 cut(s) 364
PsuI RGATCY 1 cut(s) 707
PvuII CAGCTG 1 cut(s) 412
RsaI GTAC 1 cut(s) 628
RsaNI GTAC 1 cut(s) 627
RseI CAYNNNNRTG 1 cut(s) 396
SaqAI TTAA 5 cut(s) 341, 432, 473, 699, 753
SatI GCNGC 2 cut(s) 566, 740
Sau3AI GATC 3 cut(s) 667, 707, 757
Sau96I GGNCC 3 cut(s) 117, 364, 726
SchI GAGTC 3 cut(s) 163, 232, 458
ScrFI CCNGG 1 cut(s) 722
SetI ASST 9 cut(s) 33, 101, 155, 369, 373, 414, 438, 549, 798
SfaNI GCATC 2 cut(s) 610, 646
SfcI CTRYAG 1 cut(s) 6
SfoI GGCGCC 1 cut(s) 569
SinI GGWCC 2 cut(s) 117, 364
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 2 cut(s) 64, 823
SmoI CTYRAG 2 cut(s) 64, 823
SpeI ACTAGT 1 cut(s) 559
Sse9I AATT 1 cut(s) 688
SsiI CCGC 3 cut(s) 130, 243, 565
SspDI GGCGCC 1 cut(s) 567
SspI AATATT 3 cut(s) 14, 751, 831
SspMI CTAG 6 cut(s) 368, 480, 560, 624, 641, 797
StyD4I CCNGG 1 cut(s) 720
TaaI ACNGT 4 cut(s) 93, 306, 460, 696
TaqI TCGA 2 cut(s) 506, 663
TasI AATT 1 cut(s) 688
TatI WGTACW 1 cut(s) 626
TauI GCSGC 1 cut(s) 568
TfiI GAWTC 1 cut(s) 802
Tru1I TTAA 5 cut(s) 341, 432, 473, 699, 753
Tru9I TTAA 5 cut(s) 341, 432, 473, 699, 753
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 1 cut(s) 739
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 3 cut(s) 380, 491, 583
Van91I CCANNNNNTGG 2 cut(s) 496, 735
VpaK11BI GGWCC 2 cut(s) 117, 364
XapI RAATTY 1 cut(s) 688
XbaI TCTAGA 1 cut(s) 640
XspI CTAG 6 cut(s) 368, 480, 560, 624, 641, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.