FvH4_1g12771

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000289
Physical Location & Seq
Reverse (-)
7051007 .. 7052339
1333 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12771.t1

Sequence Viewer

Length: 1173 bp
ATGGACTACTCATTTGGATTTAGCCTTTTAGGGCTTTCCCCGTGTGGATTCATTGTTGATACTCAAATCCGTATGCAAATCTTGGTTCTCTTTCATTCGGATCAGGAAACCCTGCAAAGCAAGGAAACCTTACGTTTAGTTATTAATAGGGAACCAGCGCCTGTGATTCCCTCACTTAATCGCCGGCTTCTTCCGCAAAAACATAACATGGATTCAAGTTTGTCGAATCCAAGCTCAGCGGGAGGGACAGAGCTATCAACTGAAATCCAAAGCTCTGAAATACTGCCTCGGTTACCGGCGGAGTCTTTGATGAGATTCCGGCAGGTATGCAAATCCTGGTGTTCTCTAATCTGCGAACCTTCCTTTGTTAAAGCACACTACCGCCACTTCCCGCTCCGCCAAGACCACACTCACCTTTTTCTCACCACATCCAGCGGAAACTCGGAGCCATGCCAGCACTTCTTCTCCCTCCAAATCAACCGGAAAGGACAGCTGACATTACCAACCCACATCCTAACACTTCCAGCGTCTAACTTCTCTTTTTTCCGCGGCACACACAGTGTAAATGGTTTAATCCTCTTGTCCGAACCATGCTCACAGTCCGAGCATGCTCACATAGTTAATCCATGCACAAGAGAGGTCATTACTCTTCCTCGCGCTTCCACATGTGACAAAGTTGTACACCGGCTAGGGTTTAGTGAACTTACAAACGAGTATAAGGTTCTGCAAGTGCACAAAATCGTGCACGAAACCGGTACCAAGTTGAAGTTGAAGATTTTCAGTCTAGGTAGTACAAGCTTGTGGAGGGATTTGGACTTGGATCATCTCCCTTTCAATCCAAAATCTTTGAATTTTTCTAGGAGGAGCGTGTGGCTCCGTGGAGGCATACATTGGATGCACGAGGATGAGAATGTCATTGTGGACTACGAAAACCAGATTTGGGGTGTGAAGGGGATCAGGTTCAACTTCTCTTGGCGAAATGCAGGAAGCCCCTCTCCTTTAGGTACAATCCACACAGGAGACCTTGTGCTATCGGATTCAAGCGGTAAGGTCTATCTCTACAATATGGAGAATGAAAGGTGGGGGAACATGAGTAGCATTCGTTTGCCTGACAGAGTTGCTCTCAGAAGCTTACTTACTAGTTATGATGAAACCATTCAACCATTAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

391

Amino Acids

44.33

Weight (kDa)

8.4

Isoelectric Point (pI)

51.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 93 - 124 7.8e-06 F-box-like
FBA_3 PF08268 147 - 280 9.6e-15 F-box associated beta propeller domain
FBA_1 PF07734 178 - 328 1.2e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
Acc65I GGTACC 1 cut(s) 755
AccB1I GGYRCC 1 cut(s) 755
AccBSI CCGCTC 1 cut(s) 394
AccII CGCG 2 cut(s) 549, 657
AclWI GGATC 3 cut(s) 108, 828, 962
AcsI RAATTY 1 cut(s) 850
AdeI CACNNNGTG 1 cut(s) 560
AfaI GTAC 4 cut(s) 681, 757, 793, 1006
AfiI CCNNNNNNNGG 1 cut(s) 940
AflIII ACRYGT 1 cut(s) 665
AgeI ACCGGT 1 cut(s) 752
AgsI TTSAA 8 cut(s) 216, 766, 772, 835, 850, 964, 1041, 1160
AhlI ACTAGT 1 cut(s) 1139
AjnI CCWGG 1 cut(s) 335
AluBI AGCT 6 cut(s) 234, 253, 273, 493, 798, 1131
AluI AGCT 6 cut(s) 234, 253, 273, 493, 798, 1131
Alw21I GWGCWC 2 cut(s) 735, 747
Alw26I GTCTC 1 cut(s) 1014
Alw44I GTGCAC 2 cut(s) 731, 743
AlwI GGATC 3 cut(s) 108, 828, 962
AlwNI CAGNNNCTG 1 cut(s) 161
ApaLI GTGCAC 2 cut(s) 731, 743
ApoI RAATTY 1 cut(s) 850
ArsI GACNNNNNNTTYG 1 cut(s) 28
AseI ATTAAT 1 cut(s) 144
AsiGI ACCGGT 1 cut(s) 752
Asp700I GAANNNNTTC 2 cut(s) 776, 1155
Asp718I GGTACC 1 cut(s) 755
AspLEI GCGC 2 cut(s) 160, 659
AsuHPI GGTGA 2 cut(s) 404, 415
BaeGI GKGCMC 2 cut(s) 735, 747
BanI GGYRCC 1 cut(s) 755
BarI GAAGNNNNNNTAC 2 cut(s) 1120, 1152
BauI CACGAG 1 cut(s) 899
Bbv12I GWGCWC 2 cut(s) 735, 747
BciT130I CCWGG 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 1014
BcuI ACTAGT 1 cut(s) 1139
BfaI CTAG 4 cut(s) 689, 785, 858, 1140
BfoI RGCGCY 1 cut(s) 161
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 1 cut(s) 550
BlpI GCTNAGC 1 cut(s) 235
BlsI GCNGC 1 cut(s) 551
Bme1390I CCNGG 1 cut(s) 337
BmiI GGNNCC 4 cut(s) 153, 447, 757, 875
BmrFI CCNGG 1 cut(s) 337
BmsI GCATC 1 cut(s) 885
BplI GAGNNNNNCTC 2 cut(s) 1107, 1139
Bpu1102I GCTNAGC 1 cut(s) 235
BsaI GGTCTC 1 cut(s) 1014
BsaJI CCNNGG 3 cut(s) 287, 547, 877
BsaWI WCCGGW 2 cut(s) 480, 752
BsaXI ACNNNNNCTCC 4 cut(s) 449, 479, 1011, 1041
Bsc4I CCNNNNNNNGG 1 cut(s) 940
Bse118I RCCGGY 4 cut(s) 183, 295, 684, 752
BseBI CCWGG 1 cut(s) 337
BseDI CCNNGG 3 cut(s) 287, 547, 877
BseGI GGATG 4 cut(s) 428, 510, 900, 910
BseLI CCNNNNNNNGG 1 cut(s) 940
BseMII CTCAG 2 cut(s) 249, 1138
BseRI GAGGAG 1 cut(s) 877
BseSI GKGCMC 2 cut(s) 735, 747
Bsh1236I CGCG 2 cut(s) 549, 657
BshNI GGYRCC 1 cut(s) 755
BshTI ACCGGT 1 cut(s) 752
BsiHKAI GWGCWC 2 cut(s) 735, 747
BsiSI CCGG 6 cut(s) 184, 296, 319, 481, 685, 753
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 1 cut(s) 940
BsmAI GTCTC 1 cut(s) 1014
BsmFI GGGAC 1 cut(s) 259
BsmI GAATGC 1 cut(s) 1098
Bso31I GGTCTC 1 cut(s) 1014
Bsp1286I GDGCHC 2 cut(s) 735, 747
Bsp1407I TGTACA 1 cut(s) 679
Bsp143I GATC 3 cut(s) 100, 820, 954
Bsp1720I GCTNAGC 1 cut(s) 235
BspCNI CTCAG 2 cut(s) 248, 1137
BspFNI CGCG 2 cut(s) 549, 657
BspLI GGNNCC 4 cut(s) 153, 447, 757, 875
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 3 cut(s) 108, 828, 962
BspT107I GGYRCC 1 cut(s) 755
BspTNI GGTCTC 1 cut(s) 1014
BsrBI CCGCTC 1 cut(s) 394
BsrFI RCCGGY 4 cut(s) 183, 295, 684, 752
BsrGI TGTACA 1 cut(s) 679
BssAI RCCGGY 4 cut(s) 183, 295, 684, 752
BssECI CCNNGG 3 cut(s) 287, 547, 877
BssMI GATC 3 cut(s) 100, 820, 954
BssSI CACGAG 1 cut(s) 899
Bst2BI CACGAG 1 cut(s) 899
Bst2UI CCWGG 1 cut(s) 337
Bst4CI ACNGT 2 cut(s) 560, 600
Bst6I CTCTTC 1 cut(s) 654
BstAUI TGTACA 1 cut(s) 679
BstC8I GCNNGC 3 cut(s) 185, 455, 609
BstDEI CTNAG 2 cut(s) 235, 1124
BstDSI CCRYGG 2 cut(s) 547, 877
BstEII GGTNACC 1 cut(s) 291
BstF5I GGATG 4 cut(s) 428, 510, 900, 910
BstFNI CGCG 2 cut(s) 549, 657
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 2 cut(s) 160, 659
BstKTI GATC 3 cut(s) 103, 823, 957
BstMAI GTCTC 1 cut(s) 1014
BstMBI GATC 3 cut(s) 100, 820, 954
BstMWI GCNNNNNNNGC 2 cut(s) 193, 454
BstNI CCWGG 1 cut(s) 337
BstNSI RCATGY 2 cut(s) 611, 669
BstPI GGTNACC 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 335
BstSLI GKGCMC 2 cut(s) 735, 747
BstUI CGCG 2 cut(s) 549, 657
BtgI CCRYGG 2 cut(s) 547, 877
BtsCI GGATG 4 cut(s) 428, 510, 900, 910
BtsIMutI CAGTG 1 cut(s) 565
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 3 cut(s) 185, 455, 609
CaiI CAGNNNCTG 1 cut(s) 161
CfoI GCGC 2 cut(s) 160, 659
Cfr10I RCCGGY 4 cut(s) 183, 295, 684, 752
Cfr42I CCGCGG 1 cut(s) 550
CseI GACGC 1 cut(s) 516
Csp6I GTAC 4 cut(s) 680, 756, 792, 1005
CspAI ACCGGT 1 cut(s) 752
CviAII CATG 8 cut(s) 208, 450, 591, 608, 627, 666, 1090, 1170
CviQI GTAC 4 cut(s) 680, 756, 792, 1005
DdeI CTNAG 2 cut(s) 235, 1124
DpnI GATC 3 cut(s) 102, 822, 956
DpnII GATC 3 cut(s) 100, 820, 954
DraIII CACNNNGTG 1 cut(s) 560
Eam1104I CTCTTC 1 cut(s) 654
EarI CTCTTC 1 cut(s) 654
EciI GGCGGA 2 cut(s) 314, 386
Eco31I GGTCTC 1 cut(s) 1014
Eco91I GGTNACC 1 cut(s) 291
EcoO65I GGTNACC 1 cut(s) 291
EcoRII CCWGG 1 cut(s) 335
FaeI CATG 8 cut(s) 211, 453, 594, 611, 630, 669, 1093, 1173
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 1 cut(s) 259
FatI CATG 8 cut(s) 207, 449, 590, 607, 626, 665, 1089, 1169
FauI CCCGC 2 cut(s) 232, 399
Fnu4HI GCNGC 1 cut(s) 550
FokI GGATG 4 cut(s) 415, 497, 907, 917
Fsp4HI GCNGC 1 cut(s) 550
FspBI CTAG 4 cut(s) 689, 785, 858, 1140
GlaI GCGC 2 cut(s) 159, 658
GluI GCNGC 1 cut(s) 550
HaeII RGCGCY 1 cut(s) 161
HapII CCGG 6 cut(s) 184, 296, 319, 481, 685, 753
HgaI GACGC 1 cut(s) 516
HhaI GCGC 2 cut(s) 160, 659
Hin1II CATG 8 cut(s) 211, 453, 594, 611, 630, 669, 1093, 1173
Hin6I GCGC 2 cut(s) 158, 657
HinP1I GCGC 2 cut(s) 158, 657
HindIII AAGCTT 2 cut(s) 796, 1129
HinfI GANTC 7 cut(s) 48, 166, 212, 226, 302, 315, 1037
HpaII CCGG 6 cut(s) 184, 296, 319, 481, 685, 753
HphI GGTGA 2 cut(s) 404, 415
Hpy166II GTNNAC 5 cut(s) 682, 701, 733, 745, 922
Hpy188I TCNGA 7 cut(s) 100, 277, 445, 586, 604, 1036, 1127
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 5 cut(s) 682, 701, 733, 745, 922
HpyAV CCTTC 2 cut(s) 369, 943
HpyCH4III ACNGT 2 cut(s) 560, 600
HpyCH4IV ACGT 1 cut(s) 133
HpyCH4V TGCA 9 cut(s) 76, 115, 330, 630, 727, 733, 745, 898, 983
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 454
HpyF3I CTNAG 2 cut(s) 235, 1124
HpySE526I ACGT 1 cut(s) 133
Hsp92II CATG 8 cut(s) 211, 453, 594, 611, 630, 669, 1093, 1173
HspAI GCGC 2 cut(s) 158, 657
KpnI GGTACC 1 cut(s) 759
KroI GCCGGC 1 cut(s) 183
KroNI GCCGGC 1 cut(s) 185
KspI CCGCGG 1 cut(s) 550
Kzo9I GATC 3 cut(s) 100, 820, 954
LmnI GCTCC 4 cut(s) 399, 445, 864, 879
LweI GCATC 1 cut(s) 885
MaeI CTAG 4 cut(s) 689, 785, 858, 1140
MaeII ACGT 1 cut(s) 133
MaeIII GTNAC 2 cut(s) 291, 668
MalI GATC 3 cut(s) 102, 822, 956
MbiI CCGCTC 1 cut(s) 394
MboI GATC 3 cut(s) 100, 820, 954
MboII GAAGA 4 cut(s) 182, 454, 641, 784
MhlI GDGCHC 2 cut(s) 735, 747
MluCI AATT 1 cut(s) 850
MlyI GAGTC 1 cut(s) 311
MroNI GCCGGC 1 cut(s) 183
MroXI GAANNNNTTC 2 cut(s) 776, 1155
MseI TTAA 6 cut(s) 144, 177, 369, 572, 621, 1166
MslI CAYNNNNRTG 2 cut(s) 903, 1168
MspA1I CMGCKG 4 cut(s) 239, 435, 493, 549
MspI CCGG 6 cut(s) 184, 296, 319, 481, 685, 753
MspR9I CCNGG 1 cut(s) 337
Mva1269I GAATGC 1 cut(s) 1098
MvaI CCWGG 1 cut(s) 337
MvnI CGCG 2 cut(s) 549, 657
MwoI GCNNNNNNNGC 2 cut(s) 193, 454
NaeI GCCGGC 1 cut(s) 185
NdeII GATC 3 cut(s) 100, 820, 954
NgoMIV GCCGGC 1 cut(s) 183
NlaIII CATG 8 cut(s) 211, 453, 594, 611, 630, 669, 1093, 1173
NlaIV GGNNCC 4 cut(s) 153, 447, 757, 875
NmuCI GTSAC 1 cut(s) 668
NspI RCATGY 2 cut(s) 611, 669
PaeI GCATGC 1 cut(s) 611
PciI ACATGT 1 cut(s) 665
PctI GAATGC 1 cut(s) 1098
PdiI GCCGGC 1 cut(s) 185
PdmI GAANNNNTTC 2 cut(s) 776, 1155
PfeI GAWTC 6 cut(s) 48, 166, 212, 226, 315, 1037
PinAI ACCGGT 1 cut(s) 752
PkrI GCNGC 1 cut(s) 551
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PscI ACATGT 1 cut(s) 665
PshBI ATTAAT 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 335
PspEI GGTNACC 1 cut(s) 291
PspGI CCWGG 1 cut(s) 335
PspN4I GGNNCC 4 cut(s) 153, 447, 757, 875
PstNI CAGNNNCTG 1 cut(s) 161
PvuII CAGCTG 1 cut(s) 493
RsaI GTAC 4 cut(s) 681, 757, 793, 1006
RsaNI GTAC 4 cut(s) 680, 756, 792, 1005
RseI CAYNNNNRTG 2 cut(s) 903, 1168
SacII CCGCGG 1 cut(s) 550
SaqAI TTAA 6 cut(s) 144, 177, 369, 572, 621, 1166
SatI GCNGC 1 cut(s) 550
Sau3AI GATC 3 cut(s) 100, 820, 954
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 337
SduI GDGCHC 2 cut(s) 735, 747
SfaNI GCATC 1 cut(s) 885
Sfr303I CCGCGG 1 cut(s) 550
SgrBI CCGCGG 1 cut(s) 550
SmiMI CAYNNNNRTG 2 cut(s) 903, 1168
SpeI ACTAGT 1 cut(s) 1139
SphI GCATGC 1 cut(s) 611
Sse9I AATT 1 cut(s) 850
SspMI CTAG 4 cut(s) 689, 785, 858, 1140
StyD4I CCNGG 1 cut(s) 335
TaaI ACNGT 2 cut(s) 560, 600
TaiI ACGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 224
TasI AATT 1 cut(s) 850
TatI WGTACW 2 cut(s) 679, 791
TauI GCSGC 1 cut(s) 552
TfiI GAWTC 6 cut(s) 48, 166, 212, 226, 315, 1037
Tru1I TTAA 6 cut(s) 144, 177, 369, 572, 621, 1166
Tru9I TTAA 6 cut(s) 144, 177, 369, 572, 621, 1166
TscAI CASTG 1 cut(s) 565
TseFI GTSAC 1 cut(s) 668
Tsp45I GTSAC 1 cut(s) 668
TspDTI ATGAA 4 cut(s) 40, 83, 1089, 1164
TspGWI ACGGA 2 cut(s) 59, 866
TspRI CASTG 1 cut(s) 565
VneI GTGCAC 2 cut(s) 731, 743
VspI ATTAAT 1 cut(s) 144
XapI RAATTY 1 cut(s) 850
XceI RCATGY 2 cut(s) 611, 669
XmnI GAANNNNTTC 2 cut(s) 776, 1155
XspI CTAG 4 cut(s) 689, 785, 858, 1140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.