FvH4_3g33611

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000289
Physical Location & Seq
Forward (+)
29141658 .. 29142148
491 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33611.t1

Sequence Viewer

Length: 390 bp
ATGGGATCTCTTCAAGGGCTCCCAGATGAAGTCATATTTTTTCATATACTACCAAAGGCTGCCTGCCAAGTCCCTTACGCGTTTCAGGACTATGATGATCAGGTATGGGTCAAAGAGACAATCATATATCCCTTTTCTTGGTGCGATCCAGGATACGCCATTCCCTTCTGTACTCTTCGCACCGGTGAGCTTATCCTCCAAAGTTCGACGATGTTCACAGGGAGAGATACATTTAGACGTGATTTGACACATGTATGGGTGCGTATATATGATATGAAACTGAAAATCGTAAGGAGAAGTAAAATTGATATGCCCGGATGGACATTTCCGAGGGGTGCTGAACTGGAGTTTCTTGCTAGTTATGATGACACCATTATTTCCCTAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

130

Amino Acids

15.08

Weight (kDa)

5.61

Isoelectric Point (pI)

60.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 80
AclWI GGATC 2 cut(s) 13, 140
AfaI GTAC 1 cut(s) 172
AfiI CCNNNNNNNGG 1 cut(s) 138
AflIII ACRYGT 2 cut(s) 78, 250
AgeI ACCGGT 1 cut(s) 182
AgsI TTSAA 1 cut(s) 14
AjiI CACGTC 1 cut(s) 239
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 2 cut(s) 13, 140
ApeKI GCWGC 1 cut(s) 59
AsiGI ACCGGT 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 197
BanII GRGCYC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 312
BciT130I CCWGG 1 cut(s) 150
BciVI GTATCC 1 cut(s) 146
BclI TGATCA 1 cut(s) 97
BcnI CCSGG 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 357
BfuI GTATCC 1 cut(s) 146
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 2 cut(s) 150, 315
BmgBI CACGTC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 20
BmrFI CCNGG 2 cut(s) 150, 315
BpmI CTGGAG 1 cut(s) 365
BpuMI CCSGG 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 329
BsaWI WCCGGW 1 cut(s) 182
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 348
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 329
BseGI GGATG 1 cut(s) 323
BseLI CCNNNNNNNGG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 80
BshTI ACCGGT 1 cut(s) 182
BsiSI CCGG 2 cut(s) 183, 315
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 3 cut(s) 5, 97, 145
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 20
BspPI GGATC 2 cut(s) 13, 140
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 1 cut(s) 348
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 3 cut(s) 5, 97, 145
Bst2UI CCWGG 1 cut(s) 150
Bst6I CTCTTC 2 cut(s) 15, 180
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 383
BstF5I GGATG 1 cut(s) 323
BstFNI CGCG 1 cut(s) 80
BstKTI GATC 3 cut(s) 8, 100, 148
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 3 cut(s) 5, 97, 145
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 1 cut(s) 254
BstSCI CCNGG 2 cut(s) 148, 313
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BsuI GTATCC 1 cut(s) 146
BtrI CACGTC 1 cut(s) 239
BtsCI GGATG 1 cut(s) 323
Cac8I GCNNGC 1 cut(s) 64
Cfr10I RCCGGY 1 cut(s) 182
Csp6I GTAC 1 cut(s) 171
CspAI ACCGGT 1 cut(s) 182
CviAII CATG 1 cut(s) 251
CviJI RGCY 3 cut(s) 19, 59, 190
CviKI_1 RGCY 3 cut(s) 19, 59, 190
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 1 cut(s) 383
DpnI GATC 3 cut(s) 7, 99, 147
DpnII GATC 3 cut(s) 5, 97, 145
Eam1104I CTCTTC 2 cut(s) 15, 180
EarI CTCTTC 2 cut(s) 15, 180
Eco24I GRGCYC 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 1 cut(s) 254
FaqI GGGAC 1 cut(s) 56
FatI CATG 1 cut(s) 250
FbaI TGATCA 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 330
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 357
GluI GCNGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 365
HapII CCGG 2 cut(s) 183, 315
Hin1II CATG 1 cut(s) 254
HpaII CCGG 2 cut(s) 183, 315
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 1 cut(s) 330
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 216
Hpy99I CGWCG 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 238
HpyF3I CTNAG 1 cut(s) 383
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 1 cut(s) 254
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 3 cut(s) 5, 97, 145
LmnI GCTCC 1 cut(s) 24
Lsp1109I GCAGC 1 cut(s) 46
MaeI CTAG 1 cut(s) 357
MaeII ACGT 1 cut(s) 238
MalI GATC 3 cut(s) 7, 99, 147
MboI GATC 3 cut(s) 5, 97, 145
MboII GAAGA 1 cut(s) 167
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 1 cut(s) 303
MluI ACGCGT 1 cut(s) 78
MnlI CCTC 2 cut(s) 206, 324
MslI CAYNNNNRTG 1 cut(s) 253
MspI CCGG 2 cut(s) 183, 315
MspR9I CCNGG 2 cut(s) 150, 315
MvaI CCWGG 1 cut(s) 150
MvnI CGCG 1 cut(s) 80
NciI CCSGG 1 cut(s) 315
NdeII GATC 3 cut(s) 5, 97, 145
NlaIII CATG 1 cut(s) 254
NlaIV GGNNCC 1 cut(s) 20
NspI RCATGY 1 cut(s) 254
PciI ACATGT 1 cut(s) 250
PfoI TCCNGGA 1 cut(s) 148
PinAI ACCGGT 1 cut(s) 182
PkrI GCNGC 1 cut(s) 61
PscI ACATGT 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 20
PsuI RGATCY 1 cut(s) 5
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
RseI CAYNNNNRTG 1 cut(s) 253
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 3 cut(s) 5, 97, 145
ScrFI CCNGG 2 cut(s) 150, 315
SduI GDGCHC 1 cut(s) 21
SetI ASST 3 cut(s) 105, 192, 241
SgrAI CRCCGGYG 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 253
Sse9I AATT 1 cut(s) 303
SspMI CTAG 1 cut(s) 357
StyD4I CCNGG 2 cut(s) 148, 313
TaiI ACGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 206
TasI AATT 1 cut(s) 303
TatI WGTACW 1 cut(s) 170
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 3 cut(s) 32, 42, 290
XceI RCATGY 1 cut(s) 254
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.