Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000771

Physical Location & Seq

Genomic Coordinates Forward (+)

1224526 .. 1229121

Gene Structure 4596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG019100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2487 bp

ATGACTTCACTGACCGGTTTTCCGCTACTGCTGCAACAATTCAAGGCTCTGTTCAACAAGAACCTCCTCCTCGCATGGCGCAACAAGACCGCCACCTTTCTCCAGCTCCTCTCTCCCTTATTCTTCATCTTCCTCATCTTCTGCTTCCAGAAGGCCTACGACGCTCAGACTCAGTCTTCCACTGCGTACCGGAGCTTCACCGATCCTCAGCCGCTGGTTTCGCTTCCGATCCCGCCCTGCGAGGACAAGTTCTCTATCAAAACGCCGTGCTATGATTTCGTGTGGAGCGGAGATCAGAGCCCTAGGATTCGGAGCGTTGTCGATGCCATCATGGCTAATAATCCCGGAAGGCCAATCCCGGCGACAAAGGTTAAATCGTTTAGAACCCCGGCTGAAGTAGATGAATGGCTGTATAAGAATCCTTTGTATTGCGCAGGAGCTTTGCATTTTGTGGAAAGAAATGCCACTGTGATTAGCTATGGCCTGCAGACTAATTCTACTTCTGTTGAAAAACAAGGGAAAACTGAGGATCCCACATTCAAATTTCAAATTCCACTTCAGATTGCTGCGGAGCGTGAGATTGCTAGGTCTCTAATTGGAGATTCAAAATTTAGCTGGGTTGTTGCATTCAAGGAATTTGCACACCCTGCAATGGAGAGGCCTTCTGCAATGGATAACATGGGACCAAGGTTTTTTTTCGCAGCTGCCATGTTTGGTTTTGTCTTTCAAATGACTTCTTTGATCACAGAGAAAGAACTTAAGCTGCGACAGGCAATGACAATGATGGGCCTTTATGATAGTGCATACTGGTTCTCATGGCTTGCATGGGAGGGAATTATTACACTACTCTCAGCTCTTTTCACAGTACTCTTTGGAATGATGTTTCGGTTTAATTTTTTCTTAAACAACAGCTTTGCAGTCTTATTCCTTGTTTTCTATCTTTTCCAACTCAATATGATTGGTTTTGCCTTTATGTTATCGGCCTTCATAAAAAAGTCATCTTCAACCACAACTGTCGGTTTCTCCATTTTTATCATTGGCTTTTTAATCCAGCTGGCTACATCAAACAACTATCCAAGCATTTCTAGGACTAAGCGAAACTTGTGGTCTCTATTTCCACCTAAACTTCTTTCCCAGGCTCTATATATACTCAGTGAGGCGACATCCACTCCTAAAAAGACCGGCATTAGCTGGAGTAGAAGGGCAAACTGCGGACCAGGGGATGAAAATTGTGTTATAACAATTAATGACATTTATATATGGCTGGTGGCTACATTCTTCCTCTGGTTCGTATTGGCTATATACTTCGATAATATCATCCCAAATGTATCTGGTGTGAGAAAATCAGTTTTTTACTTTCTGAAGCCAGGATACTGGACAGGGAAAAGTGGAAACAAAGTGGAAGAGCGTGGCATTTGTAGTTGCATAGGTTCACTTCCACCACTGGAGCATATTACTCCACAAGATGAAGATGTCCTTGAAGAGGAGAACATTGTTAAAGAGCAAACTAAGGAAGGCACAGTTGGTCCAAACCTTGCAGTTCAGATACGTGGCCTTGTAAAAACATATCCTGGCAAAAGACATGGTTGCTGCTGTAGCAAGAGGACGTCACCATACCATGCTCTCAAGGGGTTATGGGTCAACTTTGCAAAGGATCAGTTATTTTGTCTACTTGGACCCAATGGAGCTGGGAAAACCACAGCAATAAATTGTTTAACTGGCATCACACCAGTGACTGGAGGAGATGCGTTGATCTATGGAAATTCTGCCCGAAGCTCTGTCGGCATGGCAAATATTCGAAAAATGATAGGAGTTTGTCCACAGTTTGATATTCTTTGGGATACATTGTCTGGGCAAGAGCATCTTCACATATTCGCTAGTATCAAAGGCCTTCCTCCAGCATCAATAAAATTGACAACTGGTATGGATCCAATATCTAGAAGGCATGTATGGGACATCATAGAGGATGCAAAGAAAGGTCGTGCAATCGTCCTGACCACTCACTCAATGGAAGAAGCTGACATATTAGGTGACCGGATAGGAATTATGGCAAAGGGTAGGCTCCGCTGCATTGGAACTTCAATCAGGCTGAAGTCACGATTTGGGACTGGTTTCATTGCTAATGTGAGATTCAAAGAAAGCACCAATGGGGATGAAGTTGCAACATCTCATCACGAAGCTGTGAAGCAGTTATTTAAATATCGTTTGGATGTTTCACCAAAAGAAGAGACTACAGCCTATCTGACTTTTGTGATTCCTCATAATCGAGAGGGAATTTTGGCGAAATTTTTCGCGGAACTTCAAGATCAAGAAGATGAATTTGGCATAGCAGACATTCAACTTGGACTTACAACTCTAGAAGAAGTTTTCCTAAATATCGCAAGGCGGGCAGAGCTAGAAAGTGCCACAGCTGAGGGGAGGTTGGTTACTCTCACTTTAACATCTGGGGTATTGGTTCAGGTAAACCCACTTCTTTCATTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

828

Amino Acids

92.78

Weight (kDa)

8.87

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_3	PF12698	231 - 435	1.2e-17	ABC-2 family transporter protein
ABC_tran	PF00005	543 - 645	3.4e-10	ABC transporter
ABCA11_C	PF25158	789 - 821	2.3e-13	ABC transporter A family member 11-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47730 AT5G61690 AT5G61690 AT5G61730 AT5G61730
fragaria_vesca	FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_5g15280 FvH4_5g17010 FvH4_5g17010 FvH4_5g17010
malus_domestica	MD00G1160200.v1.1 MD11G1124700.v1.1
prunus_persica	Prupe.5G188400_v2.0.a1 Prupe.5G229500_v2.0.a1 Prupe.6G093200_v2.0.a1 Prupe.6G093200_v2.0.a1
pyrus_communis	pycom06g19960 pycom11g10520
rosa_chinensis	RchiOBHm_Chr5g0061021 RchiOBHm_Chr7g0178841 RchiOBHm_Chr7g0180781
rosa_laevigata	RLG00000005230 RLG00000005399 RLG00000005401 RLG00000005403 RLG00000005405 RLG00000035420
rosa_multiflora	Rmu_co8148594.1_g000001 Rmu_co8316781.1_g000001 Rmu_co8482325.1_g000001 Rmu_co8514565.1_g000001 Rmu_sc0000888.1_g000001 Rmu_sc0007457.1_g000010 Rmu_sc0026332.1_g000001 Rmu_ssc0000131.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019630 Rroxscaffold_3G00272530 Rroxscaffold_3G00274500
rosa_rugosa	Rorug01G0114900 Rorug01G0115000 Rorug05G0336100 Rorug06G0420200 Rorug06G0420200 Rorug06G0420300 Rorug06G0420300 Rorug06G0436000
rosa_samantha	Rh1BG106800 Rh5AG398400 Rh5BG411300 Rh5CG436300 Rh5DG425700 Rh7AG019700 Rh7AG037700 Rh7BG019100 Rh7BG037400 Rh7CG019800 Rh7CG039100 Rh7DG019700
rosa_wichuraiana	Rw5G037560 Rw7G001590 Rw7G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1238
AatII	GACGTC	1 cut(s)	1610
Acc16I	TGCGCA	1 cut(s)	433
AccB7I	CCANNNNNTGG	1 cut(s)	1736
AccBSI	CCGCTC	1 cut(s)	288
AccI	GTMKAC	1 cut(s)	1669
AccII	CGCG	1 cut(s)	2294
AclWI	GGATC	7 cut(s)	197, 223, 524, 537, 1662, 1922, 1935
AcsI	RAATTY	8 cut(s)	542, 549, 608, 635, 1762, 2274, 2285, 2318
AcuI	CTGAAG	4 cut(s)	414, 542, 1382, 2111
AcyI	GRCGYC	1 cut(s)	1607
AfaI	GTAC	2 cut(s)	188, 867
AfiI	CCNNNNNNNGG	3 cut(s)	652, 1483, 1736
AflII	CTTAAG	1 cut(s)	758
AgeI	ACCGGT	1 cut(s)	14
AjnI	CCWGG	4 cut(s)	1134, 1216, 1366, 1570
AjuI	GAANNNNNNNTTGG	4 cut(s)	1506, 1538, 2304, 2336
AleI	CACNNNNGTG	1 cut(s)	1730
Alw26I	GTCTC	3 cut(s)	594, 1113, 2222
AlwI	GGATC	7 cut(s)	197, 223, 524, 537, 1662, 1922, 1935
AlwNI	CAGNNNCTG	2 cut(s)	214, 1736
AoxI	GGCC	8 cut(s)	153, 350, 481, 659, 787, 981, 1552, 1888
ApeKI	GCWGC	7 cut(s)	31, 566, 701, 704, 763, 1590, 2067
ApoI	RAATTY	8 cut(s)	542, 549, 608, 635, 1762, 2274, 2285, 2318
AseI	ATTAAT	1 cut(s)	1245
AsiGI	ACCGGT	1 cut(s)	14
Asp700I	GAANNNNTTC	1 cut(s)	2288
AspA2I	CCTAGG	1 cut(s)	302
AspLEI	GCGC	2 cut(s)	81, 434
AspS9I	GGNCC	5 cut(s)	683, 787, 1214, 1526, 1676
AsuC2I	CCSGG	3 cut(s)	345, 359, 389
AsuHPI	GGTGA	4 cut(s)	190, 1602, 2042, 2208
AsuII	TTCGAA	1 cut(s)	1798
AvaII	GGWCC	4 cut(s)	683, 1214, 1526, 1676
AvrII	CCTAGG	1 cut(s)	302
BamHI	GGATCC	2 cut(s)	529, 1927
BanII	GRGCYC	1 cut(s)	302
BarI	GAAGNNNNNNTAC	6 cut(s)	179, 211, 1355, 1387, 2454, 2486
BbsI	GAAGAC	1 cut(s)	168
BbvCI	CCTCAGC	2 cut(s)	207, 2412
BbvI	GCAGC	7 cut(s)	18, 553, 691, 713, 750, 1577, 2054
BccI	CCATC	2 cut(s)	335, 778
BceAI	ACGGC	1 cut(s)	250
BciT130I	CCWGG	4 cut(s)	1136, 1218, 1368, 1572
BciVI	GTATCC	2 cut(s)	1364, 1834
BclI	TGATCA	1 cut(s)	741
BcnI	CCSGG	3 cut(s)	345, 359, 389
BcoDI	GTCTC	3 cut(s)	594, 1113, 2222
BfaI	CTAG	7 cut(s)	303, 585, 1086, 1878, 1938, 2357, 2396
BfmI	CTRYAG	3 cut(s)	485, 1594, 2232
BfrI	CTTAAG	1 cut(s)	758
BfuI	GTATCC	2 cut(s)	1364, 1834
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	8 cut(s)	32, 212, 567, 702, 705, 764, 1591, 2068
BlnI	CCTAGG	1 cut(s)	302
BlsI	GCNGC	8 cut(s)	33, 213, 568, 703, 706, 765, 1592, 2069
BmcAI	AGTACT	1 cut(s)	867
Bme1390I	CCNGG	7 cut(s)	345, 359, 389, 1136, 1218, 1368, 1572
Bme18I	GGWCC	4 cut(s)	683, 1214, 1526, 1676
BmgT120I	GGNCC	5 cut(s)	683, 787, 1214, 1526, 1676
BmiI	GGNNCC	5 cut(s)	531, 684, 1678, 1929, 2063
BmrFI	CCNGG	7 cut(s)	345, 359, 389, 1136, 1218, 1368, 1572
BmsI	GCATC	6 cut(s)	313, 1731, 1735, 1870, 1910, 1957
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	5 cut(s)	86, 1213, 1466, 1758, 1881
Bpu10I	CCTNAGC	2 cut(s)	207, 2412
Bpu14I	TTCGAA	1 cut(s)	1798
BpuEI	CTTGAG	1 cut(s)	1610
BpuMI	CCSGG	3 cut(s)	345, 359, 389
BsaAI	YACGTR	1 cut(s)	1550
BsaHI	GRCGYC	1 cut(s)	1607
BsaI	GGTCTC	2 cut(s)	594, 1113
BsaJI	CCNNGG	5 cut(s)	302, 387, 686, 1134, 1217
BsaWI	WCCGGW	3 cut(s)	14, 189, 2034
BsaXI	ACNNNNNCTCC	2 cut(s)	1153, 1183
Bsc4I	CCNNNNNNNGG	3 cut(s)	652, 1483, 1736
Bse118I	RCCGGY	2 cut(s)	14, 1181
Bse1I	ACTGG	8 cut(s)	812, 1379, 1449, 1723, 1730, 1741, 1924, 2113
Bse3DI	GCAATG	4 cut(s)	657, 675, 780, 2115
BseBI	CCWGG	4 cut(s)	1136, 1218, 1368, 1572
BseDI	CCNNGG	5 cut(s)	302, 387, 686, 1134, 1217
BseGI	GGATG	6 cut(s)	1163, 1228, 1317, 1972, 2158, 2215
BseLI	CCNNNNNNNGG	3 cut(s)	652, 1483, 1736
BseMI	GCAATG	4 cut(s)	657, 675, 780, 2115
BseMII	CTCAG	7 cut(s)	179, 185, 221, 516, 864, 1165, 2403
BseNI	ACTGG	8 cut(s)	812, 1379, 1449, 1723, 1730, 1741, 1924, 2113
BseRI	GAGGAG	5 cut(s)	56, 59, 98, 1499, 1755
BseXI	GCAGC	7 cut(s)	18, 553, 691, 713, 750, 1577, 2054
BseYI	CCCAGC	2 cut(s)	615, 1688
Bsh1236I	CGCG	1 cut(s)	2294
BshFI	GGCC	8 cut(s)	155, 352, 483, 661, 789, 983, 1554, 1890
BshTI	ACCGGT	1 cut(s)	14
BsiSI	CCGG	7 cut(s)	15, 190, 345, 359, 389, 1182, 2035
BslFI	GGGAC	3 cut(s)	696, 1967, 2119
BslI	CCNNNNNNNGG	3 cut(s)	652, 1483, 1736
BsmAI	GTCTC	3 cut(s)	594, 1113, 2222
BsmFI	GGGAC	3 cut(s)	696, 1967, 2119
BsmI	GAATGC	1 cut(s)	626
BsnI	GGCC	8 cut(s)	155, 352, 483, 661, 789, 983, 1554, 1890
Bso31I	GGTCTC	2 cut(s)	594, 1113
Bsp119I	TTCGAA	1 cut(s)	1798
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	9 cut(s)	202, 228, 292, 529, 741, 1654, 1752, 1927, 2305
BspANI	GGCC	8 cut(s)	155, 352, 483, 661, 789, 983, 1554, 1890
BspCNI	CTCAG	7 cut(s)	178, 184, 220, 517, 863, 1164, 2404
BspFNI	CGCG	1 cut(s)	2294
BspLI	GGNNCC	5 cut(s)	531, 684, 1678, 1929, 2063
BspMAI	CTGCAG	1 cut(s)	489
BspPI	GGATC	7 cut(s)	197, 223, 524, 537, 1662, 1922, 1935
BspQI	GCTCTTC	1 cut(s)	1398
BspT104I	TTCGAA	1 cut(s)	1798
BspTI	CTTAAG	1 cut(s)	758
BspTNI	GGTCTC	2 cut(s)	594, 1113
BsrBI	CCGCTC	1 cut(s)	288
BsrDI	GCAATG	4 cut(s)	657, 675, 780, 2115
BsrFI	RCCGGY	2 cut(s)	14, 1181
BsrI	ACTGG	8 cut(s)	812, 1379, 1449, 1723, 1730, 1741, 1924, 2113
BssAI	RCCGGY	2 cut(s)	14, 1181
BssECI	CCNNGG	5 cut(s)	302, 387, 686, 1134, 1217
BssMI	GATC	9 cut(s)	202, 228, 292, 529, 741, 1654, 1752, 1927, 2305
BssNI	GRCGYC	1 cut(s)	1607
BssT1I	CCWWGG	2 cut(s)	302, 686
Bst2UI	CCWGG	4 cut(s)	1136, 1218, 1368, 1572
Bst4CI	ACNGT	5 cut(s)	469, 865, 1015, 1522, 1824
Bst6I	CTCTTC	3 cut(s)	1398, 1476, 2220
BstACI	GRCGYC	1 cut(s)	1607
BstAFI	CTTAAG	1 cut(s)	758
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstBAI	YACGTR	1 cut(s)	1550
BstBI	TTCGAA	1 cut(s)	1798
BstC8I	GCNNGC	4 cut(s)	485, 822, 1056, 2388
BstDEI	CTNAG	9 cut(s)	165, 171, 207, 525, 850, 1092, 1151, 1509, 2412
BstEII	GGTNACC	1 cut(s)	2030
BstENI	CCTNNNNNAGG	1 cut(s)	1481
BstF5I	GGATG	6 cut(s)	1163, 1228, 1317, 1972, 2158, 2215
BstFNI	CGCG	1 cut(s)	2294
BstHHI	GCGC	2 cut(s)	81, 434
BstKTI	GATC	9 cut(s)	205, 231, 295, 532, 744, 1657, 1755, 1930, 2308
BstMAI	GTCTC	3 cut(s)	594, 1113, 2222
BstMBI	GATC	9 cut(s)	202, 228, 292, 529, 741, 1654, 1752, 1927, 2305
BstMWI	GCNNNNNNNGC	9 cut(s)	31, 161, 220, 332, 647, 1596, 1782, 2387, 2392
BstNI	CCWGG	4 cut(s)	1136, 1218, 1368, 1572
BstNSI	RCATGY	1 cut(s)	1949
BstPI	GGTNACC	1 cut(s)	2030
BstSCI	CCNGG	7 cut(s)	343, 357, 387, 1134, 1216, 1366, 1570
BstSFI	CTRYAG	3 cut(s)	485, 1594, 2232
BstUI	CGCG	1 cut(s)	2294
BstV1I	GCAGC	7 cut(s)	18, 553, 691, 713, 750, 1577, 2054
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	2 cut(s)	529, 1927
BstXI	CCANNNNNNTGG	1 cut(s)	1374
BstYI	RGATCY	2 cut(s)	529, 1927
BsuI	GTATCC	2 cut(s)	1364, 1834
BsuRI	GGCC	8 cut(s)	155, 352, 483, 661, 789, 983, 1554, 1890
BtsCI	GGATG	6 cut(s)	1163, 1228, 1317, 1972, 2158, 2215
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	6 cut(s)	8, 180, 465, 1159, 1442, 1737
Cac8I	GCNNGC	4 cut(s)	485, 822, 1056, 2388
CaiI	CAGNNNCTG	2 cut(s)	214, 1736
CfoI	GCGC	2 cut(s)	81, 434
Cfr10I	RCCGGY	2 cut(s)	14, 1181
Cfr13I	GGNCC	5 cut(s)	683, 787, 1214, 1526, 1676
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	2 cut(s)	187, 866
CspAI	ACCGGT	1 cut(s)	14
CviQI	GTAC	2 cut(s)	187, 866
DdeI	CTNAG	9 cut(s)	165, 171, 207, 525, 850, 1092, 1151, 1509, 2412
DpnI	GATC	9 cut(s)	204, 230, 294, 531, 743, 1656, 1754, 1929, 2307
DpnII	GATC	9 cut(s)	202, 228, 292, 529, 741, 1654, 1752, 1927, 2305
DraI	TTTAAA	1 cut(s)	2197
Eam1104I	CTCTTC	3 cut(s)	1398, 1476, 2220
EarI	CTCTTC	3 cut(s)	1398, 1476, 2220
Eco130I	CCWWGG	2 cut(s)	302, 686
Eco147I	AGGCCT	3 cut(s)	155, 661, 1890
Eco24I	GRGCYC	1 cut(s)	302
Eco31I	GGTCTC	2 cut(s)	594, 1113
Eco47I	GGWCC	4 cut(s)	683, 1214, 1526, 1676
Eco57I	CTGAAG	4 cut(s)	414, 542, 1382, 2111
Eco91I	GGTNACC	1 cut(s)	2030
EcoNI	CCTNNNNNAGG	1 cut(s)	1481
EcoO65I	GGTNACC	1 cut(s)	2030
EcoRII	CCWGG	4 cut(s)	1134, 1216, 1366, 1570
EcoT14I	CCWWGG	2 cut(s)	302, 686
EcoT38I	GRGCYC	1 cut(s)	302
ErhI	CCWWGG	2 cut(s)	302, 686
FalI	AAGNNNNNCTT	6 cut(s)	1085, 1117, 1461, 1493, 1848, 1880
FaqI	GGGAC	3 cut(s)	696, 1967, 2119
FauI	CCCGC	2 cut(s)	240, 2379
FbaI	TGATCA	1 cut(s)	741
FblI	GTMKAC	1 cut(s)	1669
Fnu4HI	GCNGC	8 cut(s)	32, 212, 567, 702, 705, 764, 1591, 2068
FokI	GGATG	6 cut(s)	1150, 1235, 1304, 1979, 2165, 2222
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	8 cut(s)	32, 212, 567, 702, 705, 764, 1591, 2068
FspBI	CTAG	7 cut(s)	303, 585, 1086, 1878, 1938, 2357, 2396
FspI	TGCGCA	1 cut(s)	433
GlaI	GCGC	2 cut(s)	80, 433
GluI	GCNGC	8 cut(s)	32, 212, 567, 702, 705, 764, 1591, 2068
GsaI	CCCAGC	2 cut(s)	619, 1692
GsuI	CTGGAG	5 cut(s)	86, 1213, 1466, 1758, 1881
HaeIII	GGCC	8 cut(s)	155, 352, 483, 661, 789, 983, 1554, 1890
HapII	CCGG	7 cut(s)	15, 190, 345, 359, 389, 1182, 2035
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	2 cut(s)	81, 434
Hin1I	GRCGYC	1 cut(s)	1607
Hin6I	GCGC	2 cut(s)	79, 432
HinP1I	GCGC	2 cut(s)	79, 432
HincII	GTYRAC	1 cut(s)	1642
HindII	GTYRAC	1 cut(s)	1642
HinfI	GANTC	6 cut(s)	169, 307, 418, 602, 2130, 2254
HpaII	CCGG	7 cut(s)	15, 190, 345, 359, 389, 1182, 2035
HphI	GGTGA	4 cut(s)	190, 1602, 2042, 2208
Hpy166II	GTNNAC	5 cut(s)	1433, 1642, 1670, 1820, 2464
Hpy188I	TCNGA	8 cut(s)	168, 228, 297, 312, 561, 1362, 1545, 2244
Hpy188III	TCNNGA	9 cut(s)	148, 1938, 1993, 2097, 2174, 2267, 2303, 2309, 2357
Hpy8I	GTNNAC	5 cut(s)	1433, 1642, 1670, 1820, 2464
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	8 cut(s)	145, 342, 672, 994, 1194, 1508, 1901, 1935
HpyCH4III	ACNGT	5 cut(s)	469, 865, 1015, 1522, 1824
HpyCH4IV	ACGT	2 cut(s)	1549, 1607
HpyF10VI	GCNNNNNNNGC	9 cut(s)	31, 161, 220, 332, 647, 1596, 1782, 2387, 2392
HpyF3I	CTNAG	9 cut(s)	165, 171, 207, 525, 850, 1092, 1151, 1509, 2412
HpySE526I	ACGT	2 cut(s)	1549, 1607
Hsp92I	GRCGYC	1 cut(s)	1607
HspAI	GCGC	2 cut(s)	79, 432
Ksp22I	TGATCA	1 cut(s)	741
Kzo9I	GATC	9 cut(s)	202, 228, 292, 529, 741, 1654, 1752, 1927, 2305
LguI	GCTCTTC	1 cut(s)	1398
LmnI	GCTCC	9 cut(s)	111, 192, 285, 312, 437, 571, 1447, 1685, 2067
Lsp1109I	GCAGC	7 cut(s)	18, 553, 691, 713, 750, 1577, 2054
LweI	GCATC	6 cut(s)	313, 1731, 1735, 1870, 1910, 1957
MaeI	CTAG	7 cut(s)	303, 585, 1086, 1878, 1938, 2357, 2396
MaeII	ACGT	2 cut(s)	1549, 1607
MaeIII	GTNAC	5 cut(s)	1608, 1732, 2030, 2094, 2425
MalI	GATC	9 cut(s)	204, 230, 294, 531, 743, 1656, 1754, 1929, 2307
MbiI	CCGCTC	1 cut(s)	288
MboI	GATC	9 cut(s)	202, 228, 292, 529, 741, 1654, 1752, 1927, 2305
MflI	RGATCY	2 cut(s)	529, 1927
MhlI	GDGCHC	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	970
MroXI	GAANNNNTTC	1 cut(s)	2288
MslI	CAYNNNNRTG	1 cut(s)	1730
MspA1I	CMGCKG	5 cut(s)	214, 704, 1054, 2067, 2411
MspCI	CTTAAG	1 cut(s)	758
MspI	CCGG	7 cut(s)	15, 190, 345, 359, 389, 1182, 2035
MspR9I	CCNGG	7 cut(s)	345, 359, 389, 1136, 1218, 1368, 1572
Mva1269I	GAATGC	1 cut(s)	626
MvaI	CCWGG	4 cut(s)	1136, 1218, 1368, 1572
MvnI	CGCG	1 cut(s)	2294
MwoI	GCNNNNNNNGC	9 cut(s)	31, 161, 220, 332, 647, 1596, 1782, 2387, 2392
NciI	CCSGG	3 cut(s)	345, 359, 389
NdeII	GATC	9 cut(s)	202, 228, 292, 529, 741, 1654, 1752, 1927, 2305
NlaIV	GGNNCC	5 cut(s)	531, 684, 1678, 1929, 2063
NmuCI	GTSAC	4 cut(s)	1608, 1732, 2030, 2094
NsbI	TGCGCA	1 cut(s)	433
NspI	RCATGY	1 cut(s)	1949
NspV	TTCGAA	1 cut(s)	1798
OliI	CACNNNNGTG	1 cut(s)	1730
PceI	AGGCCT	3 cut(s)	155, 661, 1890
PciSI	GCTCTTC	1 cut(s)	1398
PctI	GAATGC	1 cut(s)	626
PdmI	GAANNNNTTC	1 cut(s)	2288
PfeI	GAWTC	5 cut(s)	307, 418, 602, 2130, 2254
PflFI	GACNNNGTC	1 cut(s)	172
PflMI	CCANNNNNTGG	1 cut(s)	1736
PfoI	TCCNGGA	1 cut(s)	343
PinAI	ACCGGT	1 cut(s)	14
PkrI	GCNGC	8 cut(s)	33, 213, 568, 703, 706, 765, 1592, 2069
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Ppu21I	YACGTR	1 cut(s)	1550
PshBI	ATTAAT	1 cut(s)	1245
PsiI	TTATAA	1 cut(s)	1238
Psp6I	CCWGG	4 cut(s)	1134, 1216, 1366, 1570
PspEI	GGTNACC	1 cut(s)	2030
PspFI	CCCAGC	2 cut(s)	615, 1688
PspGI	CCWGG	4 cut(s)	1134, 1216, 1366, 1570
PspN4I	GGNNCC	5 cut(s)	531, 684, 1678, 1929, 2063
PspPI	GGNCC	5 cut(s)	683, 787, 1214, 1526, 1676
PstI	CTGCAG	1 cut(s)	489
PstNI	CAGNNNCTG	2 cut(s)	214, 1736
PsuI	RGATCY	2 cut(s)	529, 1927
PsyI	GACNNNGTC	1 cut(s)	172
PvuII	CAGCTG	3 cut(s)	704, 1054, 2411
RsaI	GTAC	2 cut(s)	188, 867
RsaNI	GTAC	2 cut(s)	187, 866
RseI	CAYNNNNRTG	1 cut(s)	1730
SapI	GCTCTTC	1 cut(s)	1398
SatI	GCNGC	8 cut(s)	32, 212, 567, 702, 705, 764, 1591, 2068
Sau3AI	GATC	9 cut(s)	202, 228, 292, 529, 741, 1654, 1752, 1927, 2305
Sau96I	GGNCC	5 cut(s)	683, 787, 1214, 1526, 1676
ScaI	AGTACT	1 cut(s)	867
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	7 cut(s)	345, 359, 389, 1136, 1218, 1368, 1572
SduI	GDGCHC	1 cut(s)	302
SfaNI	GCATC	6 cut(s)	313, 1731, 1735, 1870, 1910, 1957
SfcI	CTRYAG	3 cut(s)	485, 1594, 2232
SfuI	TTCGAA	1 cut(s)	1798
SinI	GGWCC	4 cut(s)	683, 1214, 1526, 1676
SmiI	ATTTAAAT	1 cut(s)	2197
SmiMI	CAYNNNNRTG	1 cut(s)	1730
SmlI	CTYRAG	2 cut(s)	758, 1625
SmoI	CTYRAG	2 cut(s)	758, 1625
SseBI	AGGCCT	3 cut(s)	155, 661, 1890
SspI	AATATT	1 cut(s)	1795
SspMI	CTAG	7 cut(s)	303, 585, 1086, 1878, 1938, 2357, 2396
StuI	AGGCCT	3 cut(s)	155, 661, 1890
StyD4I	CCNGG	7 cut(s)	343, 357, 387, 1134, 1216, 1366, 1570
StyI	CCWWGG	2 cut(s)	302, 686
SwaI	ATTTAAAT	1 cut(s)	2197
TaaI	ACNGT	5 cut(s)	469, 865, 1015, 1522, 1824
TaiI	ACGT	2 cut(s)	1552, 1610
TaqI	TCGA	4 cut(s)	321, 1308, 1798, 2266
TatI	WGTACW	1 cut(s)	865
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	5 cut(s)	307, 418, 602, 2130, 2254
TscAI	CASTG	6 cut(s)	15, 187, 472, 1159, 1449, 1737
TseFI	GTSAC	4 cut(s)	1608, 1732, 2030, 2094
TseI	GCWGC	7 cut(s)	31, 566, 701, 704, 763, 1590, 2067
Tsp45I	GTSAC	4 cut(s)	1608, 1732, 2030, 2094
TspDTI	ATGAA	9 cut(s)	115, 417, 976, 1239, 1482, 2104, 2169, 2331, 2466
TspRI	CASTG	6 cut(s)	15, 187, 472, 1159, 1449, 1737
Tth111I	GACNNNGTC	1 cut(s)	172
Van91I	CCANNNNNTGG	1 cut(s)	1736
Vha464I	CTTAAG	1 cut(s)	758
VpaK11BI	GGWCC	4 cut(s)	683, 1214, 1526, 1676
VspI	ATTAAT	1 cut(s)	1245
XagI	CCTNNNNNAGG	1 cut(s)	1481
XapI	RAATTY	8 cut(s)	542, 549, 608, 635, 1762, 2274, 2285, 2318
XbaI	TCTAGA	2 cut(s)	1937, 2356
XceI	RCATGY	1 cut(s)	1949
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2005
XmaJI	CCTAGG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	1669
XmnI	GAANNNNTTC	1 cut(s)	2288
XspI	CTAG	7 cut(s)	303, 585, 1086, 1878, 1938, 2357, 2396
ZraI	GACGTC	1 cut(s)	1608
ZrmI	AGTACT	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.