Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000771

Physical Location & Seq

Genomic Coordinates Reverse (-)

11448654 .. 11454516

Gene Structure 5863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1124700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2901 bp

ATGACTTTGCGGAGCGGGTTTCCGCTGCTGCACCAGCAATTCAAGGCGCTGTTCAGGAAGAACCTCCTCCTCTCATGGCGGAACAAGAGGGCCACATTTCTCCAGCTCTTCTCCTCCTTCTTCTTCATCTTCCTCATCTTCTGCATCCAGAAGGCGATCGACGCGCGCAACGCCTCCTCCACGGCGTTCGAGAGCGTCGCCAATCCTCCCGCCCTGGCCGCCCCGCCGATCCCGCCGTGCGAGGACAAATACTACATTAAGACGCCGTGCTTTGACTTCGTGTGGAGCGGAAGCGACAGCGCGAGAATTCAGAGAATCGTCGGCGCTATTAGGGATAATAATCCCGGTAGGCCAATTCCGTCGGGTAAGGTCAAATCGTTTAGGACAACAGCTGAAGTGGATGCATGGCTGTATGGTAATCCTATGCACTGCCCAGGAGCTTTGCATTTTGTGGAAAGAAACGCCACTGTTATCAGCTACGGCATACAGACTAATTCTACTCCTGTTGCAAAACGAGGGCAATATGAAGATCCCACTTTCAAATTTCAAATTCCGCTCCAGATTGCTGCTGAGCGTGAAATTGCTCGTTCTCTGATTGGAGATCCAAATTTTAGCTGGTTTGTTGCGTTCAAGGAATTTGCACACCCTGCAATGGAGCTTTTCTCTGCATTCGACACAGTAGGACCGACCTTTTTTCTTGCAACTGCCATGTTTGGATTTGTGTTTCAAATGACTTCTTTGATCACAGAGAAAGAACTAAAGCTTAGACAGGCAATGACAATGATGGGTCTCTATGATTCTGCATACTGGTTCTCATGGCTCACATGGGAGGGAATTATTACACTTCTTTCATCACTTTTCATCGTTCTCTTTGGAATGATGTTTCAGTTTGATTTTTTCCTTAACAACAGTTTTCTGGTCTTGTTCCTTGTCTTCTTTCTTTTCCAACTCAATATGCTTGGTTTCGCCTTTATGTTGTCAGCCTTCATAAGCAAATCATCATCATCAACAACTGTGGGGTTCTCTATATTTATTGTTGGTTTTATGACCCAGCTTGTTACAGCGTTCGGATTTCCGTATTCTAATAGTATCTCCAAGACCTACCGAATCATCTGGTCATTTTTTCCACCTAATCTCCTTGCCAAAGCTCTACAGTTACTAGCTGGTGCAACATCCACTCCTCAAGATATTGGGATTAGCTGGAGTAGAAGAACAAAGTGTGCACCAAATGATGATGAATGTGTTATAACAATTAATGACATATACGTATGGCTGGTGGTCACGTTCTTCCTCTGGTTTGTACTGGCTATCTACTTCGATAATATCATCCCCAACATATCTGGTGTGAGAAAATCGGTGTTTTACTTTTTAAATCCTTGGTACTGGTTTGGGAAAGGTGGAAACAAAGTGAAAGAGGGCGGCATTTGCAGTTGCATAGGTTCAGTTTCATCACAGGAGCAACTTACTGCAGATGATGAAGATGTCCTTGAAGAGGAGAACATTGTAAAACAGCAAACTAGGGAGGGCATAGTAGATCCAAACGTTGCTGTTCAGATACGTGGCCTTGTCAAGACATATCCAGGAACCACCAAAATTGGTTGTTGTAGTTGCAAGAGGACTTCATCTTACCATGCCCTCAAGGGTTTATGGGTGAACTTTTCCAAGGATCAGTTATTTTGTTTACTTGGACCAAATGGAGCTGGAAAAACCACGGCAATTAATTGTCTAACTGGAATCACACCAGTGACAGGCGGAGATGCATTGATTTATGGATATTCTGCTCGAAGCTCGGTCGGCATGGCAAAAATTAGAAAAATGATAGGAGTTTGTCCGCAGTTTGATATTCTATGGGATGCATTATCTGGCAAAGAGCACCTCCACCTGTTTGCTAGTATCAAGGGCTTACCCCCGTCTTCAATCAAATCGGTTGCTAAGAAGTCATTGGCAGAGGTGAGGCTCACTGAGTCAGCCAAAATGAGAGCTGGGAGTTACAGTGGAGGAATGAAACGTCGCCTGAGCTTTGCGATAGCCCTCATTGGTGATCCGAAGTTAGTCATTTTAGATGAACCGACAACTGGTATGGATCCCATAACAAGAAGGCATGTGTGGGACATCATAGAGGATGCAAAAAAAGGGCGTGCAATTGTCCTTACCACTCACTCGATGGAAGAAGCTGACATTTTAAGTGATCGTATAGGAATAATGGCAAAGGGTAGGCTCCGTTGCATTGGAACTTCAATCAGGCTTAAGTCTCGGTTTGGGACTGGTTTTATTGCTAATGTGAGCTTCACTGGAAGCACCAATGGACAAAGTTCTCCAAACTGGGATGCAGTTACTACACCTCACCATGAGGCTGTGAAGCAGTTCTTTAAAGATCATTTGGATGTTTTACCGAAAGAAGAGAACAAGGCCTTTCTGACTTTTGTTATTCCTCACGACAAAGAGGGGCTTTTGAAGAAGTTTTTTGCGGAGCTACAAGACAGAGAAAGTGAATTCGGTATATCAGACATCCAGCTTGGTCTTACAACTCTCGAAGAAGTTTTCTTGAATATTGCGAGGCAGGCAGAGCTAGAAACTGCCACAGCTGAGGGGAGGTTGGTCCCTCTCAATTTAACATCCGGAGCCTATGTTGAGATACCTGTAGGAGCTAGGTTTGTGGGGATTCCAGGGACAGCTTCTGCAGAAAATCCGAGAGGGACTATGGTAGAAGTTTACTGGGAGCAAGATGATTCCGGTGCCCTCTGCATATCTGGCTACTCAGCCGAAGCTCCAATACCACCTCATGTTGAATCAATGTCTTCCTCGGCTCCAACTTCACGCAGAAGCAGCCGGTCACGACAAGTTCATGGAATTGTGATTCACCCGGACCAAATCAGTAATACTAGTCCTACTGTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

967

Amino Acids

107.22

Weight (kDa)

8.66

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_3	PF12698	222 - 438	2.5e-18	ABC-2 family transporter protein
ABC_tran	PF00005	547 - 692	2.1e-23	ABC transporter
AAA_21	PF13304	656 - 724	3.2e-09	AAA domain, putative AbiEii toxin, Type IV TA system
ABCA11_C	PF25158	847 - 901	6.9e-29	ABC transporter A family member 11-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47730 AT5G61690 AT5G61690 AT5G61730 AT5G61730
fragaria_vesca	FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_5g15280 FvH4_5g17010 FvH4_5g17010 FvH4_5g17010
malus_domestica	MD00G1160200.v1.1 MD11G1124700.v1.1
prunus_persica	Prupe.5G188400_v2.0.a1 Prupe.5G229500_v2.0.a1 Prupe.6G093200_v2.0.a1 Prupe.6G093200_v2.0.a1
pyrus_communis	pycom06g19960 pycom11g10520
rosa_chinensis	RchiOBHm_Chr5g0061021 RchiOBHm_Chr7g0178841 RchiOBHm_Chr7g0180781
rosa_laevigata	RLG00000005230 RLG00000005399 RLG00000005401 RLG00000005403 RLG00000005405 RLG00000035420
rosa_multiflora	Rmu_co8148594.1_g000001 Rmu_co8316781.1_g000001 Rmu_co8482325.1_g000001 Rmu_co8514565.1_g000001 Rmu_sc0000888.1_g000001 Rmu_sc0007457.1_g000010 Rmu_sc0026332.1_g000001 Rmu_ssc0000131.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019630 Rroxscaffold_3G00272530 Rroxscaffold_3G00274500
rosa_rugosa	Rorug01G0114900 Rorug01G0115000 Rorug05G0336100 Rorug06G0420200 Rorug06G0420200 Rorug06G0420300 Rorug06G0420300 Rorug06G0436000
rosa_samantha	Rh1BG106800 Rh5AG398400 Rh5BG411300 Rh5CG436300 Rh5DG425700 Rh7AG019700 Rh7AG037700 Rh7BG019100 Rh7BG037400 Rh7CG019800 Rh7CG039100 Rh7DG019700
rosa_wichuraiana	Rw5G037560 Rw7G001590 Rw7G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1247
AccB1I	GGYRCC	1 cut(s)	2735
AccBSI	CCGCTC	3 cut(s)	15, 288, 556
AccII	CGCG	3 cut(s)	164, 166, 302
AccIII	TCCGGA	1 cut(s)	2618
AclI	AACGTT	1 cut(s)	1542
AclWI	GGATC	8 cut(s)	223, 524, 596, 1529, 1674, 2036, 2078, 2091
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	6 cut(s)	306, 542, 549, 607, 635, 2492
AcuI	CTGAAG	1 cut(s)	414
AcyI	GRCGYC	1 cut(s)	263
AfaI	GTAC	2 cut(s)	1302, 1382
AfiI	CCNNNNNNNGG	4 cut(s)	652, 1492, 1748, 2075
AflII	CTTAAG	1 cut(s)	2246
AhlI	ACTAGT	1 cut(s)	2882
AjnI	CCWGG	4 cut(s)	213, 433, 1579, 2665
AleI	CACNNNNGTG	1 cut(s)	1742
Alw21I	GWGCWC	2 cut(s)	1225, 1875
Alw26I	GTCTC	2 cut(s)	794, 2256
Alw44I	GTGCAC	1 cut(s)	1221
AlwI	GGATC	8 cut(s)	223, 524, 596, 1529, 1674, 2036, 2078, 2091
AlwNI	CAGNNNCTG	1 cut(s)	2678
Aor13HI	TCCGGA	1 cut(s)	2618
AoxI	GGCC	5 cut(s)	90, 216, 350, 1561, 2409
ApaLI	GTGCAC	1 cut(s)	1221
ApeKI	GCWGC	4 cut(s)	25, 28, 566, 2826
ApoI	RAATTY	6 cut(s)	306, 542, 549, 607, 635, 2492
AseI	ATTAAT	2 cut(s)	1254, 1719
Asp700I	GAANNNNTTC	1 cut(s)	2363
AspLEI	GCGC	5 cut(s)	49, 166, 168, 302, 326
AspS9I	GGNCC	5 cut(s)	90, 683, 1688, 2599, 2866
AsuC2I	CCSGG	2 cut(s)	345, 2864
AsuHPI	GGTGA	5 cut(s)	1663, 1963, 2051, 2336, 2852
AvaII	GGWCC	4 cut(s)	683, 1688, 2599, 2866
BaeGI	GKGCMC	2 cut(s)	1225, 2740
BamHI	GGATCC	1 cut(s)	2083
BanI	GGYRCC	1 cut(s)	2735
BarI	GAAGNNNNNNTAC	2 cut(s)	2757, 2789
BbsI	GAAGAC	3 cut(s)	925, 1905, 2790
Bbv12I	GWGCWC	2 cut(s)	1225, 1875
BbvCI	CCTCAGC	1 cut(s)	2586
BbvI	GCAGC	4 cut(s)	12, 15, 553, 2838
BccI	CCATC	2 cut(s)	778, 2158
BceAI	ACGGC	5 cut(s)	198, 220, 250, 496, 1728
BciT130I	CCWGG	4 cut(s)	215, 435, 1581, 2667
BclI	TGATCA	1 cut(s)	741
BcnI	CCSGG	2 cut(s)	345, 2864
BcoDI	GTCTC	2 cut(s)	794, 2256
BcuI	ACTAGT	1 cut(s)	2882
BfaI	CTAG	6 cut(s)	1160, 1518, 1890, 2570, 2649, 2883
BfmI	CTRYAG	4 cut(s)	1151, 1467, 2640, 2679
BfoI	RGCGCY	2 cut(s)	50, 327
BfrI	CTTAAG	1 cut(s)	2246
BisI	GCNGC	6 cut(s)	26, 29, 219, 567, 1420, 2827
BlpI	GCTNAGC	1 cut(s)	570
BlsI	GCNGC	6 cut(s)	27, 30, 220, 568, 1421, 2828
Bme1390I	CCNGG	6 cut(s)	215, 345, 435, 1581, 2667, 2864
Bme18I	GGWCC	4 cut(s)	683, 1688, 2599, 2866
BmgT120I	GGNCC	5 cut(s)	90, 683, 1688, 2599, 2866
BmiI	GGNNCC	7 cut(s)	1585, 2085, 2219, 2601, 2623, 2737, 2808
BmrFI	CCNGG	6 cut(s)	215, 345, 435, 1581, 2667, 2864
BmrI	ACTGGG	2 cut(s)	2332, 2725
BmsI	GCATC	6 cut(s)	153, 391, 1747, 1843, 2113, 2317
BmuI	ACTGGG	2 cut(s)	2332, 2725
BpiI	GAAGAC	3 cut(s)	925, 1905, 2790
BplI	GAGNNNNNCTC	2 cut(s)	647, 679
BpmI	CTGGAG	3 cut(s)	86, 542, 1222
Bpu10I	CCTNAGC	2 cut(s)	2015, 2586
Bpu1102I	GCTNAGC	1 cut(s)	570
BpuEI	CTTGAG	2 cut(s)	1167, 1622
BpuMI	CCSGG	2 cut(s)	345, 2864
BsaAI	YACGTR	2 cut(s)	1267, 1559
BsaBI	GATNNNNATC	1 cut(s)	339
BsaHI	GRCGYC	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	794
BsaJI	CCNNGG	8 cut(s)	180, 213, 433, 1376, 1662, 1710, 2666, 2802
BsaWI	WCCGGW	2 cut(s)	2618, 2732
Bsc4I	CCNNNNNNNGG	4 cut(s)	652, 1492, 1748, 2075
Bse118I	RCCGGY	1 cut(s)	2829
Bse3DI	GCAATG	2 cut(s)	657, 780
Bse8I	GATNNNNATC	1 cut(s)	339
BseAI	TCCGGA	1 cut(s)	2618
BseBI	CCWGG	4 cut(s)	215, 435, 1581, 2667
BseDI	CCNNGG	8 cut(s)	180, 213, 433, 1376, 1662, 1710, 2666, 2802
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	4 cut(s)	652, 1492, 1748, 2075
BseMI	GCAATG	2 cut(s)	657, 780
BseMII	CTCAG	5 cut(s)	561, 1953, 2006, 2577, 2772
BsePI	GCGCGC	1 cut(s)	164
BseRI	GAGGAG	6 cut(s)	56, 59, 103, 166, 1170, 1508
BseSI	GKGCMC	2 cut(s)	1225, 2740
BseXI	GCAGC	4 cut(s)	12, 15, 553, 2838
BseYI	CCCAGC	2 cut(s)	1050, 1982
BsgI	GTGCAG	1 cut(s)	14
Bsh1236I	CGCG	3 cut(s)	164, 166, 302
Bsh1285I	CGRYCG	2 cut(s)	159, 1794
BshFI	GGCC	5 cut(s)	92, 218, 352, 1563, 2411
BshNI	GGYRCC	1 cut(s)	2735
BsiEI	CGRYCG	2 cut(s)	159, 1794
BsiHKAI	GWGCWC	2 cut(s)	1225, 1875
BsiSI	CCGG	5 cut(s)	345, 2619, 2733, 2830, 2864
BslFI	GGGAC	5 cut(s)	2123, 2275, 2585, 2683, 2710
BslI	CCNNNNNNNGG	4 cut(s)	652, 1492, 1748, 2075
BsmAI	GTCTC	2 cut(s)	794, 2256
BsmFI	GGGAC	5 cut(s)	2123, 2275, 2585, 2683, 2710
BsmI	GAATGC	1 cut(s)	668
BsnI	GGCC	5 cut(s)	92, 218, 352, 1563, 2411
Bso31I	GGTCTC	1 cut(s)	794
Bsp1286I	GDGCHC	3 cut(s)	1225, 1875, 2740
Bsp13I	TCCGGA	1 cut(s)	2618
Bsp1720I	GCTNAGC	1 cut(s)	570
BspANI	GGCC	5 cut(s)	92, 218, 352, 1563, 2411
BspCNI	CTCAG	5 cut(s)	562, 1954, 2007, 2578, 2771
BspEI	TCCGGA	1 cut(s)	2618
BspFNI	CGCG	3 cut(s)	164, 166, 302
BspLI	GGNNCC	7 cut(s)	1585, 2085, 2219, 2601, 2623, 2737, 2808
BspMAI	CTGCAG	2 cut(s)	1471, 2683
BspPI	GGATC	8 cut(s)	223, 524, 596, 1529, 1674, 2036, 2078, 2091
BspQI	GCTCTTC	1 cut(s)	113
BspT107I	GGYRCC	1 cut(s)	2735
BspTI	CTTAAG	1 cut(s)	2246
BspTNI	GGTCTC	1 cut(s)	794
BsrBI	CCGCTC	3 cut(s)	15, 288, 556
BsrDI	GCAATG	2 cut(s)	657, 780
BsrFI	RCCGGY	1 cut(s)	2829
BssAI	RCCGGY	1 cut(s)	2829
BssECI	CCNNGG	8 cut(s)	180, 213, 433, 1376, 1662, 1710, 2666, 2802
BssHII	GCGCGC	1 cut(s)	164
BssNI	GRCGYC	1 cut(s)	263
BssT1I	CCWWGG	2 cut(s)	1376, 1662
Bst2UI	CCWGG	4 cut(s)	215, 435, 1581, 2667
Bst4CI	ACNGT	7 cut(s)	469, 679, 911, 1015, 1155, 1994, 2893
Bst6I	CTCTTC	3 cut(s)	113, 1485, 2394
BstACI	GRCGYC	1 cut(s)	263
BstAFI	CTTAAG	1 cut(s)	2246
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstBAI	YACGTR	2 cut(s)	1267, 1559
BstC8I	GCNNGC	3 cut(s)	166, 2139, 2562
BstDEI	CTNAG	7 cut(s)	570, 764, 1932, 1962, 2015, 2586, 2758
BstDSI	CCRYGG	2 cut(s)	180, 1710
BstENI	CCTNNNNNAGG	1 cut(s)	1490
BstFNI	CGCG	3 cut(s)	164, 166, 302
BstH2I	RGCGCY	2 cut(s)	50, 327
BstHHI	GCGC	5 cut(s)	49, 166, 168, 302, 326
BstMAI	GTCTC	2 cut(s)	794, 2256
BstMCI	CGRYCG	2 cut(s)	159, 1794
BstNI	CCWGG	4 cut(s)	215, 435, 1581, 2667
BstNSI	RCATGY	1 cut(s)	2105
BstSCI	CCNGG	6 cut(s)	213, 343, 433, 1579, 2665, 2862
BstSFI	CTRYAG	4 cut(s)	1151, 1467, 2640, 2679
BstSLI	GKGCMC	2 cut(s)	1225, 2740
BstSNI	TACGTA	1 cut(s)	1267
BstUI	CGCG	3 cut(s)	164, 166, 302
BstV1I	GCAGC	4 cut(s)	12, 15, 553, 2838
BstV2I	GAAGAC	3 cut(s)	925, 1905, 2790
BstX2I	RGATCY	4 cut(s)	529, 601, 1534, 2083
BstYI	RGATCY	4 cut(s)	529, 601, 1534, 2083
BsuRI	GGCC	5 cut(s)	92, 218, 352, 1563, 2411
BtgI	CCRYGG	2 cut(s)	180, 1710
BtsI	GCAGTG	1 cut(s)	427
BtsIMutI	CAGTG	6 cut(s)	427, 465, 1749, 1959, 1999, 2289
Cac8I	GCNNGC	3 cut(s)	166, 2139, 2562
CaiI	CAGNNNCTG	1 cut(s)	2678
CfoI	GCGC	5 cut(s)	49, 166, 168, 302, 326
Cfr10I	RCCGGY	1 cut(s)	2829
Cfr13I	GGNCC	5 cut(s)	90, 683, 1688, 2599, 2866
CseI	GACGC	3 cut(s)	170, 184, 271
Csp6I	GTAC	2 cut(s)	1301, 1381
CspCI	CAANNNNNGTGG	4 cut(s)	996, 1031, 1576, 1611
CviQI	GTAC	2 cut(s)	1301, 1381
DdeI	CTNAG	7 cut(s)	570, 764, 1932, 1962, 2015, 2586, 2758
DraI	TTTAAA	2 cut(s)	1371, 2371
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	3 cut(s)	113, 1485, 2394
EarI	CTCTTC	3 cut(s)	113, 1485, 2394
EciI	GGCGGA	2 cut(s)	94, 1767
Eco105I	TACGTA	1 cut(s)	1267
Eco130I	CCWWGG	2 cut(s)	1376, 1662
Eco147I	AGGCCT	1 cut(s)	2411
Eco31I	GGTCTC	1 cut(s)	794
Eco47I	GGWCC	4 cut(s)	683, 1688, 2599, 2866
Eco57I	CTGAAG	1 cut(s)	414
EcoNI	CCTNNNNNAGG	1 cut(s)	1490
EcoRI	GAATTC	2 cut(s)	306, 2492
EcoRII	CCWGG	4 cut(s)	213, 433, 1579, 2665
EcoT14I	CCWWGG	2 cut(s)	1376, 1662
EcoT22I	ATGCAT	3 cut(s)	406, 1762, 1858
ErhI	CCWWGG	2 cut(s)	1376, 1662
FalI	AAGNNNNNCTT	6 cut(s)	1470, 1502, 2351, 2383, 2433, 2465
FaqI	GGGAC	5 cut(s)	2123, 2275, 2585, 2683, 2710
FauI	CCCGC	4 cut(s)	8, 217, 231, 240
FbaI	TGATCA	1 cut(s)	741
Fnu4HI	GCNGC	6 cut(s)	26, 29, 219, 567, 1420, 2827
Fsp4HI	GCNGC	6 cut(s)	26, 29, 219, 567, 1420, 2827
FspBI	CTAG	6 cut(s)	1160, 1518, 1890, 2570, 2649, 2883
GlaI	GCGC	5 cut(s)	48, 165, 167, 301, 325
GluI	GCNGC	6 cut(s)	26, 29, 219, 567, 1420, 2827
GsaI	CCCAGC	2 cut(s)	1054, 1986
GsuI	CTGGAG	3 cut(s)	86, 542, 1222
HaeII	RGCGCY	2 cut(s)	50, 327
HaeIII	GGCC	5 cut(s)	92, 218, 352, 1563, 2411
HapII	CCGG	5 cut(s)	345, 2619, 2733, 2830, 2864
HgaI	GACGC	3 cut(s)	170, 184, 271
HhaI	GCGC	5 cut(s)	49, 166, 168, 302, 326
Hin1I	GRCGYC	1 cut(s)	263
Hin6I	GCGC	5 cut(s)	47, 164, 166, 300, 324
HinP1I	GCGC	5 cut(s)	47, 164, 166, 300, 324
HindIII	AAGCTT	1 cut(s)	761
HinfI	GANTC	9 cut(s)	315, 797, 1107, 1734, 1964, 2662, 2729, 2789, 2857
HpaII	CCGG	5 cut(s)	345, 2619, 2733, 2830, 2864
HphI	GGTGA	5 cut(s)	1663, 1963, 2051, 2336, 2852
Hpy166II	GTNNAC	4 cut(s)	1223, 1654, 1682, 2713
Hpy188I	TCNGA	8 cut(s)	312, 594, 1070, 1554, 2046, 2418, 2506, 2691
Hpy8I	GTNNAC	4 cut(s)	1223, 1654, 1682, 2713
Hpy99I	CGWCG	5 cut(s)	164, 200, 323, 364, 2013
HpyAV	CCTTC	4 cut(s)	127, 145, 994, 2091
HpyCH4III	ACNGT	7 cut(s)	469, 679, 911, 1015, 1155, 1994, 2893
HpyCH4IV	ACGT	5 cut(s)	1266, 1283, 1542, 1558, 2008
HpyF3I	CTNAG	7 cut(s)	570, 764, 1932, 1962, 2015, 2586, 2758
HpySE526I	ACGT	5 cut(s)	1266, 1283, 1542, 1558, 2008
Hsp92I	GRCGYC	1 cut(s)	263
HspAI	GCGC	5 cut(s)	47, 164, 166, 300, 324
Kpn2I	TCCGGA	1 cut(s)	2618
Ksp22I	TGATCA	1 cut(s)	741
LguI	GCTCTTC	1 cut(s)	113
Lsp1109I	GCAGC	4 cut(s)	12, 15, 553, 2838
LweI	GCATC	6 cut(s)	153, 391, 1747, 1843, 2113, 2317
MaeI	CTAG	6 cut(s)	1160, 1518, 1890, 2570, 2649, 2883
MaeII	ACGT	5 cut(s)	1266, 1283, 1542, 1558, 2008
MaeIII	GTNAC	7 cut(s)	1057, 1155, 1279, 1744, 1988, 2332, 2832
MbiI	CCGCTC	3 cut(s)	15, 288, 556
MfeI	CAATTG	1 cut(s)	2142
MflI	RGATCY	4 cut(s)	529, 601, 1534, 2083
MhlI	GDGCHC	3 cut(s)	1225, 1875, 2740
MlyI	GAGTC	1 cut(s)	1973
MmeI	TCCRAC	2 cut(s)	970, 2834
Mph1103I	ATGCAT	3 cut(s)	406, 1762, 1858
MroI	TCCGGA	1 cut(s)	2618
MroXI	GAANNNNTTC	1 cut(s)	2363
MslI	CAYNNNNRTG	2 cut(s)	1742, 2382
MspA1I	CMGCKG	3 cut(s)	25, 392, 2585
MspCI	CTTAAG	1 cut(s)	2246
MspI	CCGG	5 cut(s)	345, 2619, 2733, 2830, 2864
MspR9I	CCNGG	6 cut(s)	215, 345, 435, 1581, 2667, 2864
MunI	CAATTG	1 cut(s)	2142
Mva1269I	GAATGC	1 cut(s)	668
MvaI	CCWGG	4 cut(s)	215, 435, 1581, 2667
MvnI	CGCG	3 cut(s)	164, 166, 302
NciI	CCSGG	2 cut(s)	345, 2864
NlaIV	GGNNCC	7 cut(s)	1585, 2085, 2219, 2601, 2623, 2737, 2808
NmeAIII	GCCGAG	1 cut(s)	2783
NmuCI	GTSAC	3 cut(s)	1279, 1744, 2832
NsiI	ATGCAT	3 cut(s)	406, 1762, 1858
NspI	RCATGY	1 cut(s)	2105
OliI	CACNNNNGTG	1 cut(s)	1742
PauI	GCGCGC	1 cut(s)	164
PceI	AGGCCT	1 cut(s)	2411
PciSI	GCTCTTC	1 cut(s)	113
PctI	GAATGC	1 cut(s)	668
PdmI	GAANNNNTTC	1 cut(s)	2363
PfeI	GAWTC	8 cut(s)	315, 797, 1107, 1734, 2662, 2729, 2789, 2857
PfoI	TCCNGGA	1 cut(s)	1579
PkrI	GCNGC	6 cut(s)	27, 30, 220, 568, 1421, 2828
Ple19I	CGATCG	1 cut(s)	159
PleI	GAGTC	1 cut(s)	1972
PpsI	GAGTC	1 cut(s)	1972
Ppu21I	YACGTR	2 cut(s)	1267, 1559
PshBI	ATTAAT	2 cut(s)	1254, 1719
PsiI	TTATAA	1 cut(s)	1247
Psp1406I	AACGTT	1 cut(s)	1542
Psp6I	CCWGG	4 cut(s)	213, 433, 1579, 2665
PspFI	CCCAGC	2 cut(s)	1050, 1982
PspGI	CCWGG	4 cut(s)	213, 433, 1579, 2665
PspN4I	GGNNCC	7 cut(s)	1585, 2085, 2219, 2601, 2623, 2737, 2808
PspPI	GGNCC	5 cut(s)	90, 683, 1688, 2599, 2866
PstI	CTGCAG	2 cut(s)	1471, 2683
PstNI	CAGNNNCTG	1 cut(s)	2678
PsuI	RGATCY	4 cut(s)	529, 601, 1534, 2083
PteI	GCGCGC	1 cut(s)	164
PvuI	CGATCG	1 cut(s)	159
PvuII	CAGCTG	2 cut(s)	392, 2585
RsaI	GTAC	2 cut(s)	1302, 1382
RsaNI	GTAC	2 cut(s)	1301, 1381
RseI	CAYNNNNRTG	2 cut(s)	1742, 2382
SapI	GCTCTTC	1 cut(s)	113
SatI	GCNGC	6 cut(s)	26, 29, 219, 567, 1420, 2827
Sau96I	GGNCC	5 cut(s)	90, 683, 1688, 2599, 2866
SchI	GAGTC	1 cut(s)	1973
ScrFI	CCNGG	6 cut(s)	215, 345, 435, 1581, 2667, 2864
SduI	GDGCHC	3 cut(s)	1225, 1875, 2740
SfaNI	GCATC	6 cut(s)	153, 391, 1747, 1843, 2113, 2317
SfcI	CTRYAG	4 cut(s)	1151, 1467, 2640, 2679
SinI	GGWCC	4 cut(s)	683, 1688, 2599, 2866
SmiMI	CAYNNNNRTG	2 cut(s)	1742, 2382
SmlI	CTYRAG	3 cut(s)	1182, 1637, 2246
SmoI	CTYRAG	3 cut(s)	1182, 1637, 2246
SnaBI	TACGTA	1 cut(s)	1267
SpeI	ACTAGT	1 cut(s)	2882
SseBI	AGGCCT	1 cut(s)	2411
SspI	AATATT	1 cut(s)	2551
SspMI	CTAG	6 cut(s)	1160, 1518, 1890, 2570, 2649, 2883
StuI	AGGCCT	1 cut(s)	2411
StyD4I	CCNGG	6 cut(s)	213, 343, 433, 1579, 2665, 2862
StyI	CCWWGG	2 cut(s)	1376, 1662
TaaI	ACNGT	7 cut(s)	469, 679, 911, 1015, 1155, 1994, 2893
TaiI	ACGT	5 cut(s)	1269, 1286, 1545, 1561, 2011
TaqI	TCGA	7 cut(s)	159, 189, 672, 1317, 1783, 2162, 2532
TaqII	GACCGA	2 cut(s)	700, 1780
TatI	WGTACW	1 cut(s)	1300
TauI	GCSGC	2 cut(s)	221, 1422
TfiI	GAWTC	8 cut(s)	315, 797, 1107, 1734, 2662, 2729, 2789, 2857
TscAI	CASTG	6 cut(s)	434, 472, 1749, 1966, 1999, 2296
TseFI	GTSAC	3 cut(s)	1279, 1744, 2832
TseI	GCWGC	4 cut(s)	25, 28, 566, 2826
Tsp45I	GTSAC	3 cut(s)	1279, 1744, 2832
TspGWI	ACGGA	3 cut(s)	348, 1065, 2210
TspRI	CASTG	6 cut(s)	434, 472, 1749, 1966, 1999, 2296
Vha464I	CTTAAG	1 cut(s)	2246
VneI	GTGCAC	1 cut(s)	1221
VpaK11BI	GGWCC	4 cut(s)	683, 1688, 2599, 2866
VspI	ATTAAT	2 cut(s)	1254, 1719
XagI	CCTNNNNNAGG	1 cut(s)	1490
XapI	RAATTY	6 cut(s)	306, 542, 549, 607, 635, 2492
XceI	RCATGY	1 cut(s)	2105
XcmI	CCANNNNNNNNNTGG	2 cut(s)	612, 2161
XmnI	GAANNNNTTC	1 cut(s)	2363
XspI	CTAG	6 cut(s)	1160, 1518, 1890, 2570, 2649, 2883
Zsp2I	ATGCAT	3 cut(s)	406, 1762, 1858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.