Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000771

Physical Location & Seq

Genomic Coordinates Reverse (-)

67396224 .. 67398154

Gene Structure 1931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005405

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAGTTCACTGACTGGTTTTCCGCTACTGTTGCAACAATTCAAGGCTCTGTTCAACAAGAACCTCCTCCTCGCATGGCGCAACAAGACCGCCACTTTTCTCCAGCTCCTCTCTGCCTTATTCTTCATCTTCCTCATCTTCTGCTTCCAGAAGGCCTACAACGCTATGACTCAGTCTTCCACTGCGTACCGGAGCGTCACTGATCCTCAGCCGCTGGTTTCGCTTCCGATCCCGCCCTGCGAGGACAAGTTCTCTATCAAAACGCATTGCTATGATTTTGTGTGGAGCGGAGATCAGAGCCCTAGGATTCGGAGCGTTGTCGATGCCATCATGGCTAATAATCCCAGAAGGCCAATCCCGGCAACAAAGGTTAAATCGTTTAGAACGCCGGCTGAAGTAGATGAATGGCTATATAAGAATCCTTTGTATTGCCCAGGAGCTTTGCATTTTGTGGAAAGAAATGCCACTGTGATTAGCTATGGCCTGCAGACTAATTCTACTTCTGTTGAAAAACAAGGGAAAACTGAGGATCCCACATTAAAATTTCAAATACCACTTCAGATTGCTGCGGAGCGTGAGATTGCTAGGTCTCTAATTGGAGTTGTACTTGCATGTTACCAGTTGAATTTTAGCACTTTTATGACGCTTTGTTCAAATTCAAAATTTAGCTGGGTTGTTGCATTCAAGAAATTTGCACACCCTGCAATGGAGAGGCCTTCTGTAATGGATAACAGGGGACCAAGGTTTTTTTTTTCGCAGCTGCCATGTTTGGCAATGACAATGATGGGCCTTTATGATAGTGCATACTGGTTCTCCTGGCTTGCATGGGAGGGAATTATTACACTACTCTCAGCTCTTTTCACAGTTCTCTTTGGAATGATGTTTCGGGTCAATTTTCCATTGCAGCTGGCTACATCAAACAACTACCCATCCAATAAAAGCATTTCTAGGACTAAGCGAAACTTGTGGTCTCTATTTCTACCTAAACTTCTTTCCCAGGCTCTATATATACTCAGTGAGGCGACATCCACTCCTAAAAAGGACTGGCATTGGCTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

354

Amino Acids

40.42

Weight (kDa)

9.51

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47730 AT5G61690 AT5G61690 AT5G61730 AT5G61730
fragaria_vesca	FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_5g15280 FvH4_5g17010 FvH4_5g17010 FvH4_5g17010
malus_domestica	MD00G1160200.v1.1 MD11G1124700.v1.1
prunus_persica	Prupe.5G188400_v2.0.a1 Prupe.5G229500_v2.0.a1 Prupe.6G093200_v2.0.a1 Prupe.6G093200_v2.0.a1
pyrus_communis	pycom06g19960 pycom11g10520
rosa_chinensis	RchiOBHm_Chr5g0061021 RchiOBHm_Chr7g0178841 RchiOBHm_Chr7g0180781
rosa_laevigata	RLG00000005230 RLG00000005399 RLG00000005401 RLG00000005403 RLG00000005405 RLG00000035420
rosa_multiflora	Rmu_co8148594.1_g000001 Rmu_co8316781.1_g000001 Rmu_co8482325.1_g000001 Rmu_co8514565.1_g000001 Rmu_sc0000888.1_g000001 Rmu_sc0007457.1_g000010 Rmu_sc0026332.1_g000001 Rmu_ssc0000131.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019630 Rroxscaffold_3G00272530 Rroxscaffold_3G00274500
rosa_rugosa	Rorug01G0114900 Rorug01G0115000 Rorug05G0336100 Rorug06G0420200 Rorug06G0420200 Rorug06G0420300 Rorug06G0420300 Rorug06G0436000
rosa_samantha	Rh1BG106800 Rh5AG398400 Rh5BG411300 Rh5CG436300 Rh5DG425700 Rh7AG019700 Rh7AG037700 Rh7BG019100 Rh7BG037400 Rh7CG019800 Rh7CG039100 Rh7DG019700
rosa_wichuraiana	Rw5G037560 Rw7G001590 Rw7G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	288
AciI	CCGC	6 cut(s)	23, 90, 212, 233, 288, 569
AclWI	GGATC	4 cut(s)	197, 223, 524, 537
AcsI	RAATTY	5 cut(s)	542, 625, 655, 662, 689
AcuI	CTGAAG	2 cut(s)	414, 542
AfaI	GTAC	2 cut(s)	188, 606
AfiI	CCNNNNNNNGG	1 cut(s)	706
AgsI	TTSAA	8 cut(s)	43, 55, 509, 548, 625, 654, 660, 685
AjnI	CCWGG	3 cut(s)	433, 815, 996
AluBI	AGCT	7 cut(s)	106, 440, 477, 669, 760, 854, 907
AluI	AGCT	7 cut(s)	106, 440, 477, 669, 760, 854, 907
Alw26I	GTCTC	2 cut(s)	594, 975
AlwI	GGATC	4 cut(s)	197, 223, 524, 537
AlwNI	CAGNNNCTG	1 cut(s)	214
AoxI	GGCC	5 cut(s)	153, 350, 481, 713, 787
ApeKI	GCWGC	4 cut(s)	566, 757, 760, 904
ApoI	RAATTY	5 cut(s)	542, 625, 655, 662, 689
AspA2I	CCTAGG	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	737, 787
AsuC2I	CCSGG	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	737
AvrII	CCTAGG	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	529
BanII	GRGCYC	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	168
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	4 cut(s)	553, 747, 769, 916
BccI	CCATC	3 cut(s)	335, 778, 937
BciT130I	CCWGG	3 cut(s)	435, 817, 998
BcnI	CCSGG	1 cut(s)	359
BcoDI	GTCTC	2 cut(s)	594, 975
BfaI	CTAG	3 cut(s)	303, 585, 948
BfmI	CTRYAG	1 cut(s)	485
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	5 cut(s)	212, 567, 758, 761, 905
BlnI	CCTAGG	1 cut(s)	302
BlsI	GCNGC	5 cut(s)	213, 568, 759, 762, 906
Bme1390I	CCNGG	4 cut(s)	359, 435, 817, 998
Bme18I	GGWCC	1 cut(s)	737
BmgT120I	GGNCC	2 cut(s)	737, 787
BmiI	GGNNCC	2 cut(s)	531, 738
BmrFI	CCNGG	4 cut(s)	359, 435, 817, 998
BmsI	GCATC	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	359
BsaI	GGTCTC	2 cut(s)	594, 975
BsaJI	CCNNGG	4 cut(s)	302, 433, 740, 996
BsaWI	WCCGGW	1 cut(s)	189
BsaXI	ACNNNNNCTCC	4 cut(s)	797, 827, 1015, 1045
Bsc4I	CCNNNNNNNGG	1 cut(s)	706
Bse118I	RCCGGY	1 cut(s)	388
Bse1I	ACTGG	4 cut(s)	19, 619, 812, 1049
Bse3DI	GCAATG	4 cut(s)	265, 711, 780, 899
BseBI	CCWGG	3 cut(s)	435, 817, 998
BseDI	CCNNGG	4 cut(s)	302, 433, 740, 996
BseGI	GGATG	2 cut(s)	929, 1025
BseLI	CCNNNNNNNGG	1 cut(s)	706
BseMI	GCAATG	4 cut(s)	265, 711, 780, 899
BseMII	CTCAG	5 cut(s)	185, 221, 516, 864, 1027
BseNI	ACTGG	4 cut(s)	19, 619, 812, 1049
BseRI	GAGGAG	3 cut(s)	56, 59, 98
BseXI	GCAGC	4 cut(s)	553, 747, 769, 916
BseYI	CCCAGC	1 cut(s)	669
BshFI	GGCC	5 cut(s)	155, 352, 483, 715, 789
BsiSI	CCGG	3 cut(s)	190, 359, 389
BslFI	GGGAC	1 cut(s)	750
BslI	CCNNNNNNNGG	1 cut(s)	706
BsmAI	GTCTC	2 cut(s)	594, 975
BsmFI	GGGAC	1 cut(s)	750
BsmI	GAATGC	1 cut(s)	680
BsnI	GGCC	5 cut(s)	155, 352, 483, 715, 789
Bso31I	GGTCTC	2 cut(s)	594, 975
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	4 cut(s)	202, 228, 292, 529
BspACI	CCGC	6 cut(s)	23, 90, 212, 233, 288, 569
BspANI	GGCC	5 cut(s)	155, 352, 483, 715, 789
BspCNI	CTCAG	5 cut(s)	184, 220, 517, 863, 1026
BspLI	GGNNCC	2 cut(s)	531, 738
BspMAI	CTGCAG	1 cut(s)	489
BspPI	GGATC	4 cut(s)	197, 223, 524, 537
BspTNI	GGTCTC	2 cut(s)	594, 975
BsrBI	CCGCTC	1 cut(s)	288
BsrDI	GCAATG	4 cut(s)	265, 711, 780, 899
BsrFI	RCCGGY	1 cut(s)	388
BsrI	ACTGG	4 cut(s)	19, 619, 812, 1049
BssAI	RCCGGY	1 cut(s)	388
BssECI	CCNNGG	4 cut(s)	302, 433, 740, 996
BssMI	GATC	4 cut(s)	202, 228, 292, 529
BssT1I	CCWWGG	2 cut(s)	302, 740
Bst2UI	CCWGG	3 cut(s)	435, 817, 998
Bst4CI	ACNGT	3 cut(s)	30, 469, 865
BstAPI	GCANNNNNTGC	1 cut(s)	701
BstC8I	GCNNGC	4 cut(s)	390, 485, 822, 909
BstDEI	CTNAG	6 cut(s)	171, 207, 525, 850, 954, 1013
BstF5I	GGATG	2 cut(s)	929, 1025
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	4 cut(s)	205, 231, 295, 532
BstMAI	GTCTC	2 cut(s)	594, 975
BstMBI	GATC	4 cut(s)	202, 228, 292, 529
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 161, 220, 332, 701
BstNI	CCWGG	3 cut(s)	435, 817, 998
BstNSI	RCATGY	1 cut(s)	615
BstSCI	CCNGG	4 cut(s)	357, 433, 815, 996
BstSFI	CTRYAG	1 cut(s)	485
BstV1I	GCAGC	4 cut(s)	553, 747, 769, 916
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BsuRI	GGCC	5 cut(s)	155, 352, 483, 715, 789
BtsCI	GGATG	2 cut(s)	929, 1025
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	5 cut(s)	8, 180, 198, 465, 1021
Cac8I	GCNNGC	4 cut(s)	390, 485, 822, 909
CaiI	CAGNNNCTG	1 cut(s)	214
CfoI	GCGC	1 cut(s)	81
Cfr10I	RCCGGY	1 cut(s)	388
Cfr13I	GGNCC	2 cut(s)	737, 787
CseI	GACGC	2 cut(s)	184, 652
Csp6I	GTAC	2 cut(s)	187, 605
CviAII	CATG	5 cut(s)	75, 331, 612, 765, 825
CviQI	GTAC	2 cut(s)	187, 605
DdeI	CTNAG	6 cut(s)	171, 207, 525, 850, 954, 1013
DpnI	GATC	4 cut(s)	204, 230, 294, 531
DpnII	GATC	4 cut(s)	202, 228, 292, 529
Eco130I	CCWWGG	2 cut(s)	302, 740
Eco147I	AGGCCT	2 cut(s)	155, 715
Eco24I	GRGCYC	1 cut(s)	302
Eco31I	GGTCTC	2 cut(s)	594, 975
Eco47I	GGWCC	1 cut(s)	737
Eco57I	CTGAAG	2 cut(s)	414, 542
EcoRII	CCWGG	3 cut(s)	433, 815, 996
EcoT14I	CCWWGG	2 cut(s)	302, 740
EcoT38I	GRGCYC	1 cut(s)	302
ErhI	CCWWGG	2 cut(s)	302, 740
FaeI	CATG	5 cut(s)	78, 334, 615, 768, 828
FalI	AAGNNNNNCTT	2 cut(s)	947, 979
FaqI	GGGAC	1 cut(s)	750
FatI	CATG	5 cut(s)	74, 330, 611, 764, 824
FauI	CCCGC	1 cut(s)	240
Fnu4HI	GCNGC	5 cut(s)	212, 567, 758, 761, 905
FokI	GGATG	2 cut(s)	916, 1012
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	5 cut(s)	212, 567, 758, 761, 905
FspBI	CTAG	3 cut(s)	303, 585, 948
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	5 cut(s)	212, 567, 758, 761, 905
GsaI	CCCAGC	1 cut(s)	673
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	5 cut(s)	155, 352, 483, 715, 789
HapII	CCGG	3 cut(s)	190, 359, 389
HgaI	GACGC	2 cut(s)	184, 652
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	5 cut(s)	78, 334, 615, 768, 828
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	3 cut(s)	169, 307, 418
HpaII	CCGG	3 cut(s)	190, 359, 389
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	4 cut(s)	228, 297, 312, 561
Hpy188III	TCNNGA	2 cut(s)	148, 685
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	3 cut(s)	145, 342, 726
HpyCH4III	ACNGT	3 cut(s)	30, 469, 865
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 161, 220, 332, 701
HpyF3I	CTNAG	6 cut(s)	171, 207, 525, 850, 954, 1013
Hsp92II	CATG	5 cut(s)	78, 334, 615, 768, 828
HspAI	GCGC	1 cut(s)	79
KroI	GCCGGC	1 cut(s)	388
KroNI	GCCGGC	1 cut(s)	390
Kzo9I	GATC	4 cut(s)	202, 228, 292, 529
LmnI	GCTCC	6 cut(s)	111, 192, 285, 312, 437, 571
Lsp1109I	GCAGC	4 cut(s)	553, 747, 769, 916
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	3 cut(s)	303, 585, 948
MaeIII	GTNAC	2 cut(s)	196, 614
MalI	GATC	4 cut(s)	204, 230, 294, 531
MbiI	CCGCTC	1 cut(s)	288
MboI	GATC	4 cut(s)	202, 228, 292, 529
MboII	GAAGA	4 cut(s)	115, 121, 130, 168
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	163
MroNI	GCCGGC	1 cut(s)	388
MseI	TTAA	2 cut(s)	372, 539
MslI	CAYNNNNRTG	2 cut(s)	270, 638
MspA1I	CMGCKG	3 cut(s)	214, 760, 907
MspI	CCGG	3 cut(s)	190, 359, 389
MspR9I	CCNGG	4 cut(s)	359, 435, 817, 998
Mva1269I	GAATGC	1 cut(s)	680
MvaI	CCWGG	3 cut(s)	435, 817, 998
MwoI	GCNNNNNNNGC	5 cut(s)	31, 161, 220, 332, 701
NaeI	GCCGGC	1 cut(s)	390
NciI	CCSGG	1 cut(s)	359
NdeII	GATC	4 cut(s)	202, 228, 292, 529
NgoMIV	GCCGGC	1 cut(s)	388
NlaIII	CATG	5 cut(s)	78, 334, 615, 768, 828
NlaIV	GGNNCC	2 cut(s)	531, 738
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	615
PceI	AGGCCT	2 cut(s)	155, 715
PctI	GAATGC	1 cut(s)	680
PdiI	GCCGGC	1 cut(s)	390
PfeI	GAWTC	2 cut(s)	307, 418
PflFI	GACNNNGTC	1 cut(s)	172
PkrI	GCNGC	5 cut(s)	213, 568, 759, 762, 906
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Psp6I	CCWGG	3 cut(s)	433, 815, 996
PspFI	CCCAGC	1 cut(s)	669
PspGI	CCWGG	3 cut(s)	433, 815, 996
PspN4I	GGNNCC	2 cut(s)	531, 738
PspPI	GGNCC	2 cut(s)	737, 787
PstI	CTGCAG	1 cut(s)	489
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	529
PsyI	GACNNNGTC	1 cut(s)	172
PvuII	CAGCTG	2 cut(s)	760, 907
RsaI	GTAC	2 cut(s)	188, 606
RsaNI	GTAC	2 cut(s)	187, 605
RseI	CAYNNNNRTG	2 cut(s)	270, 638
SaqAI	TTAA	2 cut(s)	372, 539
SatI	GCNGC	5 cut(s)	212, 567, 758, 761, 905
Sau3AI	GATC	4 cut(s)	202, 228, 292, 529
Sau96I	GGNCC	2 cut(s)	737, 787
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	4 cut(s)	359, 435, 817, 998
SduI	GDGCHC	1 cut(s)	302
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	485
SinI	GGWCC	1 cut(s)	737
SmiMI	CAYNNNNRTG	2 cut(s)	270, 638
SseBI	AGGCCT	2 cut(s)	155, 715
SsiI	CCGC	6 cut(s)	23, 90, 212, 233, 288, 569
SspMI	CTAG	3 cut(s)	303, 585, 948
StuI	AGGCCT	2 cut(s)	155, 715
StyD4I	CCNGG	4 cut(s)	357, 433, 815, 996
StyI	CCWWGG	2 cut(s)	302, 740
TaaI	ACNGT	3 cut(s)	30, 469, 865
TaqI	TCGA	1 cut(s)	321
TatI	WGTACW	1 cut(s)	604
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	2 cut(s)	307, 418
Tru1I	TTAA	2 cut(s)	372, 539
Tru9I	TTAA	2 cut(s)	372, 539
TscAI	CASTG	5 cut(s)	15, 187, 205, 472, 1021
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	4 cut(s)	566, 757, 760, 904
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	2 cut(s)	115, 417
TspRI	CASTG	5 cut(s)	15, 187, 205, 472, 1021
Tth111I	GACNNNGTC	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	737
XapI	RAATTY	5 cut(s)	542, 625, 655, 662, 689
XceI	RCATGY	1 cut(s)	615
XmaJI	CCTAGG	1 cut(s)	302
XspI	CTAG	3 cut(s)	303, 585, 948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.