Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000771

Physical Location & Seq

Genomic Coordinates Reverse (-)

2404032 .. 2409494

Gene Structure 5463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG037400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2769 bp

ATGATGGAATTAGTGAGCGGATTCCCGTTGCTCCTCCAGCAATTCACGGCCATGTTCAAGAAGAACCTCCTCCTCGCGTGGCGTCACAAAGTCGGCACCCTCGTCCATCTCTTCTCTTCATTCTTTTTCATTTTTCTCATCTTCTGCATCCAGAAAGCACTCGAGGCTAACTCAGCGTCGTCCACGGCGTTCAAGACCATCAAGGACCCCGAGCCTCTGGCCTCACGGCCGATCCCGCCCTGCGAGGAGAAGGATTTCATCAAGAAGCCTTGCTATGACTTCGTGTGGAGCGGCGATGGGAGCCCGGAGATCCAGACCATTGTGGACGGCATCATGGCTAACAACCCCGGCCGGAAGATCCCTTCGAGCAAGGTGAAAGGGTTTAAATCAACAGATGAAGTAGACAAATGGCTGGCTGATAATCAAAAGATTTGCCCGGGAGCTTTGCATTTTGCGGTAAGAGATGACAAAGTGATTAGCTATGGCGTGCAGACTAATTCCACTCACGTAGCCAAAAGAAGGGAATATGAAGATATCACCATGAAATTCCAAATTCCACTTCAGATTGCCGCGGAGCGTGAGATTGCTAGGGTTCTGATTGGAGATCCGAATTTTAGCTGGAATGTCGCTTTCAAGGAATTTCCACACCCTGCAAGGGAGTTGTACTCAGCAATTGCGCAAGTAGGACCAACCTTTTTCCTTGCAACCGCAATGTTTGGTTTTGTATTTCAAATGACATCCTTGATCACAGAGAAAGAACTAAAGCTTCGAGAGGCAATGACGATGATGGGTCTTTATGATACCGCCTACTGGTTATCATGGCTCACATGGGAGGGGATTATGACAGTTTTCTCATCACTTTTCATAGTTCTCTTTGGAATGATGTTTCAGTTTGACTTTTTCCTAAAGAACAATTTTGTAGTCCTATACCTCCTCTTCTTTCTTTTCCAACTGAATATGATTGGTTTTTCCTTCTGGCTCTCGGCCTTCATAAGCAAGGCATCTTCATCCACAACTGTGGGTTTCGTCATATTCATTATTGGCTTCATAACCCAGATGGTGACAAAATTCTGGCCTTATGATGATAGTACCGCTAAAAAATATCAAATCATGTGGTCATTCTTCCCACCTAATCTTCTTGCCAAAGGTCTATTCATACTCGCTGATGCAACAGCCACTTCCCAAGATGATGGGATTAGGTTGAGTAAAATAACAGAGTGTGGACCAAAAGATCCAAAATGTGTTATGACAATTAGTGACATTTACAAATGGCTTGTGAGTTCATTCTTCCTCTGGTTTGTATTGGCTCTCTACTTCGATAACATTCGCGCAAATGCATCTGGTGTGAAAAAACCACTTTATTACTTTTTAACGCCCGGCTACTGGTTAGGGACAGGTGGGGTAAAAGTGAAAGAGGGTAAAAATGCGATACCAAATGATCATATTACTCCAGATGATGCGGATGTCCTTGAAGAGGAGCACCTTGTTAAACAACAATCTATGGAAGGCACACTTGATCCAAGAATTGCAGTTCAGATACGTGGCCTTGTAAAGACATATCCTGGGAAGAAAAGACCTTTTTGTTGTTGCTGCTGCTGCTGCTGCAAGGAGACTCCACCTTACAATGCTGTCAAGGGATTATGGGTGAACTTTGCAAAGGATCAGTTATTCTGTCTGCTTGGACCTAACGGAGCTGGGAAAAGCACAACAATCAGTTGTTTAGTTGGTATCACACCATTTACTGGAGGAGATGCATTGATTTATGACCATTCTGCCCGAAGCTCTGGTGGTATGGCAAATATTCGAAAACTTATAGGAGTTTGTCCACAGTTTGACGTGCTTTGGAGTGCGTTGACTGGGCAAGAGCACCTCCAACTGTTCGCTACTATTAAAGGCCTACCCCCAGCTTCAATAGAAACGATTGCTGAGAAGTCATTGGCGGAGGTGAAACTCACTGAGGCAGCTAAAATGAGAGCTGGGAGTTACAGTGGAGGAATGAAACGTCGCCTGAGTGTTGCAATAGCCTTTATTGGTGATCCGAAGTTGGTTATTTTAGATGAACCGACAACCGGTATAGATCCCATAACAAGAAGGCATGTCTGGGACATCATAGAGGGGGCCAAGAAAGGGCGTTCAATTGTCCTAACAACCCATTCAATGGAAGAAGCTGACATTCTAAGTGACCGGATAGGAATCATGGCAAAGGGGAGGCTCCGTTGCATCGGAACTTCAATCAGACTGAAGTCACGGTTTGGGAGTGGTTTTATTGCTAATGTGAGCTTAAGGGGAGGCGCTGATAGCCGAAGTCATGAATCTGTGAAGCAGTTCTTTAAATACCATTTGGATGTTTTACAAAAAGAAGAGACCGACTGCTATCTGACTTTTGTTATTCCTCAGGAAAAAGAGGGACGTTTGACGAATTTTTTTGCTGAGCTTCAAGATAGGCAACATGAATTTGGTATAGCTGACATCCAACTTGGTCTCACAACTCTAGAAGAAGTTTTCTTGAATATATCAAGGCAAGCGGAGCTAGAAGCCGCCATGGCAGAAGGGAGGCTGGTTACTCTCACTTTAACATCTGGAGAGTCAGTTGAGATACCCGTAGGAGCCAAGCATGCATTGATTCCAAAAACAGAATCTGAAGAGCATCCGAACGGGCTTATGGTAGAAGTTTACTGGGATCAAGATGAGTCTGGTAAACTCTGCATTGCTGGTCACTCAGCCGAAACTCCAGTACCTCAGAATATTGATCCCATGAGTTTACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

922

Amino Acids

103.12

Weight (kDa)

6.82

Isoelectric Point (pI)

32.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_3	PF12698	208 - 438	5.3e-20	ABC-2 family transporter protein
ABC_tran	PF00005	546 - 690	1.1e-23	ABC transporter
AAA_21	PF13304	645 - 722	5.4e-08	AAA domain, putative AbiEii toxin, Type IV TA system
ABCA11_C	PF25158	834 - 888	4e-26	ABC transporter A family member 11-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47730 AT5G61690 AT5G61690 AT5G61730 AT5G61730
fragaria_vesca	FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_5g15280 FvH4_5g17010 FvH4_5g17010 FvH4_5g17010
malus_domestica	MD00G1160200.v1.1 MD11G1124700.v1.1
prunus_persica	Prupe.5G188400_v2.0.a1 Prupe.5G229500_v2.0.a1 Prupe.6G093200_v2.0.a1 Prupe.6G093200_v2.0.a1
pyrus_communis	pycom06g19960 pycom11g10520
rosa_chinensis	RchiOBHm_Chr5g0061021 RchiOBHm_Chr7g0178841 RchiOBHm_Chr7g0180781
rosa_laevigata	RLG00000005230 RLG00000005399 RLG00000005401 RLG00000005403 RLG00000005405 RLG00000035420
rosa_multiflora	Rmu_co8148594.1_g000001 Rmu_co8316781.1_g000001 Rmu_co8482325.1_g000001 Rmu_co8514565.1_g000001 Rmu_sc0000888.1_g000001 Rmu_sc0007457.1_g000010 Rmu_sc0026332.1_g000001 Rmu_ssc0000131.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019630 Rroxscaffold_3G00272530 Rroxscaffold_3G00274500
rosa_rugosa	Rorug01G0114900 Rorug01G0115000 Rorug05G0336100 Rorug06G0420200 Rorug06G0420200 Rorug06G0420300 Rorug06G0420300 Rorug06G0436000
rosa_samantha	Rh1BG106800 Rh5AG398400 Rh5BG411300 Rh5CG436300 Rh5DG425700 Rh7AG019700 Rh7AG037700 Rh7BG019100 Rh7BG037400 Rh7CG019800 Rh7CG039100 Rh7DG019700
rosa_wichuraiana	Rw5G037560 Rw7G001590 Rw7G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	678
AccB1I	GGYRCC	1 cut(s)	95
AccB7I	CCANNNNNTGG	2 cut(s)	1742, 2158
AccBSI	CCGCTC	2 cut(s)	18, 291
AccI	GTMKAC	1 cut(s)	402
AccII	CGCG	3 cut(s)	77, 572, 1329
AcoI	YGGCCR	3 cut(s)	48, 227, 349
AcsI	RAATTY	7 cut(s)	545, 552, 610, 638, 1067, 2419, 2453
AcuI	CTGAAG	3 cut(s)	545, 2261, 2661
AcyI	GRCGYC	1 cut(s)	82
AfaI	GTAC	3 cut(s)	665, 1090, 2736
AfiI	CCNNNNNNNGG	9 cut(s)	519, 655, 810, 1383, 1474, 1742, 2069, 2127, 2158
AflII	CTTAAG	1 cut(s)	2281
AgeI	ACCGGT	1 cut(s)	2069
AjiI	CACGTC	1 cut(s)	1837
AjnI	CCWGG	1 cut(s)	1561
AjuI	GAANNNNNNNTTGG	4 cut(s)	543, 575, 1136, 1168
AleI	CACNNNNGTG	1 cut(s)	1016
Alw21I	GWGCWC	2 cut(s)	1482, 1869
Alw26I	GTCTC	3 cut(s)	1604, 2357, 2486
AlwNI	CAGNNNCTG	1 cut(s)	2639
Ama87I	CYCGRG	3 cut(s)	161, 209, 436
AoxI	GGCC	9 cut(s)	48, 219, 227, 349, 984, 1073, 1543, 1894, 2118
ApeKI	GCWGC	6 cut(s)	1590, 1593, 1596, 1599, 1602, 1961
ApoI	RAATTY	7 cut(s)	545, 552, 610, 638, 1067, 2419, 2453
AsiGI	ACCGGT	1 cut(s)	2069
Asp700I	GAANNNNTTC	2 cut(s)	254, 2324
AspLEI	GCGC	3 cut(s)	679, 1331, 2294
AspS9I	GGNCC	5 cut(s)	205, 686, 1223, 1682, 2118
AsuC2I	CCSGG	5 cut(s)	305, 348, 437, 438, 1377
AsuHPI	GGTGA	6 cut(s)	385, 529, 1072, 1657, 1957, 2045
AsuII	TTCGAA	1 cut(s)	1804
AvaI	CYCGRG	3 cut(s)	161, 209, 436
AvaII	GGWCC	4 cut(s)	205, 686, 1223, 1682
AxyI	CCTNAGG	1 cut(s)	2394
BaeI	ACNNNNGTAYC	2 cut(s)	2718, 2751
BanI	GGYRCC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	305
Bbv12I	GWGCWC	2 cut(s)	1482, 1869
BbvI	GCAGC	6 cut(s)	1577, 1580, 1583, 1586, 1589, 1973
BccI	CCATC	6 cut(s)	114, 206, 290, 781, 1051, 1184
BceAI	ACGGC	4 cut(s)	63, 201, 242, 343
BciT130I	CCWGG	1 cut(s)	1563
BclI	TGATCA	2 cut(s)	744, 1438
BcnI	CCSGG	5 cut(s)	305, 348, 437, 438, 1377
BcoDI	GTCTC	3 cut(s)	1604, 2357, 2486
BfaI	CTAG	3 cut(s)	588, 2492, 2531
BfoI	RGCGCY	1 cut(s)	2295
BfrI	CTTAAG	1 cut(s)	2281
BglI	GCCNNNNNGGC	1 cut(s)	2543
BisI	GCNGC	9 cut(s)	292, 570, 1591, 1594, 1597, 1600, 1603, 1962, 2538
BlpI	GCTNAGC	1 cut(s)	2430
BlsI	GCNGC	9 cut(s)	293, 571, 1592, 1595, 1598, 1601, 1604, 1963, 2539
Bme1390I	CCNGG	6 cut(s)	305, 348, 437, 438, 1377, 1563
Bme18I	GGWCC	4 cut(s)	205, 686, 1223, 1682
BmeT110I	CYCGRG	3 cut(s)	161, 209, 436
BmgBI	CACGTC	1 cut(s)	1837
BmgT120I	GGNCC	5 cut(s)	205, 686, 1223, 1682, 2118
BmiI	GGNNCC	6 cut(s)	97, 207, 302, 2119, 2213, 2608
BmrFI	CCNGG	6 cut(s)	305, 348, 437, 438, 1377, 1563
BmrI	ACTGGG	2 cut(s)	1866, 2686
BmsI	GCATC	9 cut(s)	156, 339, 1010, 1156, 1346, 1447, 1741, 2229, 2656
BmuI	ACTGGG	2 cut(s)	1866, 2686
BoxI	GACNNNNGTC	1 cut(s)	2242
BplI	GAGNNNNNCTC	4 cut(s)	155, 187, 650, 682
BpmI	CTGGAG	5 cut(s)	20, 1434, 1764, 2601, 2715
Bpu1102I	GCTNAGC	1 cut(s)	2430
Bpu14I	TTCGAA	1 cut(s)	1804
BpuMI	CCSGG	5 cut(s)	305, 348, 437, 438, 1377
BsaAI	YACGTR	2 cut(s)	508, 1541
BsaBI	GATNNNNATC	1 cut(s)	2192
BsaHI	GRCGYC	1 cut(s)	82
BsaI	GGTCTC	2 cut(s)	2357, 2486
BsaJI	CCNNGG	6 cut(s)	183, 346, 436, 570, 1562, 2541
BsaWI	WCCGGW	2 cut(s)	2069, 2184
BsaXI	ACNNNNNCTCC	6 cut(s)	1972, 2002, 2200, 2230, 2574, 2604
Bsc4I	CCNNNNNNNGG	9 cut(s)	519, 655, 810, 1383, 1474, 1742, 2069, 2127, 2158
Bse118I	RCCGGY	1 cut(s)	2069
Bse1I	ACTGG	6 cut(s)	815, 1388, 1747, 1861, 2681, 2732
Bse21I	CCTNAGG	1 cut(s)	2394
Bse3DI	GCAATG	3 cut(s)	717, 783, 2706
Bse8I	GATNNNNATC	1 cut(s)	2192
BseBI	CCWGG	1 cut(s)	1563
BseDI	CCNNGG	6 cut(s)	183, 346, 436, 570, 1562, 2541
BseGI	GGATG	7 cut(s)	147, 737, 1007, 1468, 2350, 2469, 2647
BseJI	GATNNNNATC	1 cut(s)	2192
BseLI	CCNNNNNNNGG	9 cut(s)	519, 655, 810, 1383, 1474, 1742, 2069, 2127, 2158
BseMI	GCAATG	3 cut(s)	717, 783, 2706
BseMII	CTCAG	9 cut(s)	186, 681, 1917, 1947, 2000, 2408, 2421, 2733, 2753
BseNI	ACTGG	6 cut(s)	815, 1388, 1747, 1861, 2681, 2732
BseRI	GAGGAG	7 cut(s)	23, 59, 62, 260, 923, 1490, 1761
BseX3I	CGGCCG	2 cut(s)	227, 349
BseXI	GCAGC	6 cut(s)	1577, 1580, 1583, 1586, 1589, 1973
BseYI	CCCAGC	3 cut(s)	1694, 1903, 1976
BsgI	GTGCAG	1 cut(s)	509
Bsh1236I	CGCG	3 cut(s)	77, 572, 1329
Bsh1285I	CGRYCG	2 cut(s)	230, 352
BshFI	GGCC	9 cut(s)	50, 221, 229, 351, 986, 1075, 1545, 1896, 2120
BshNI	GGYRCC	1 cut(s)	95
BshTI	ACCGGT	1 cut(s)	2069
BsiEI	CGRYCG	2 cut(s)	230, 352
BsiHKAI	GWGCWC	2 cut(s)	1482, 1869
BsiHKCI	CYCGRG	3 cut(s)	161, 209, 436
BsiSI	CCGG	7 cut(s)	305, 348, 352, 437, 1377, 2070, 2185
BslFI	GGGAC	3 cut(s)	1405, 2117, 2421
BslI	CCNNNNNNNGG	9 cut(s)	519, 655, 810, 1383, 1474, 1742, 2069, 2127, 2158
BsmAI	GTCTC	3 cut(s)	1604, 2357, 2486
BsmFI	GGGAC	3 cut(s)	1405, 2117, 2421
BsnI	GGCC	9 cut(s)	50, 221, 229, 351, 986, 1075, 1545, 1896, 2120
Bso31I	GGTCTC	2 cut(s)	2357, 2486
BsoBI	CYCGRG	3 cut(s)	161, 209, 436
Bsp119I	TTCGAA	1 cut(s)	1804
Bsp1286I	GDGCHC	3 cut(s)	305, 1482, 1869
Bsp1720I	GCTNAGC	1 cut(s)	2430
Bsp19I	CCATGG	1 cut(s)	2541
BspANI	GGCC	9 cut(s)	50, 221, 229, 351, 986, 1075, 1545, 1896, 2120
BspCNI	CTCAG	9 cut(s)	185, 680, 1918, 1948, 2001, 2407, 2422, 2732, 2752
BspFNI	CGCG	3 cut(s)	77, 572, 1329
BspHI	TCATGA	1 cut(s)	2308
BspLI	GGNNCC	6 cut(s)	97, 207, 302, 2119, 2213, 2608
BspQI	GCTCTTC	1 cut(s)	2637
BspT104I	TTCGAA	1 cut(s)	1804
BspT107I	GGYRCC	1 cut(s)	95
BspTI	CTTAAG	1 cut(s)	2281
BspTNI	GGTCTC	2 cut(s)	2357, 2486
BsrBI	CCGCTC	2 cut(s)	18, 291
BsrDI	GCAATG	3 cut(s)	717, 783, 2706
BsrFI	RCCGGY	1 cut(s)	2069
BsrI	ACTGG	6 cut(s)	815, 1388, 1747, 1861, 2681, 2732
BssAI	RCCGGY	1 cut(s)	2069
BssECI	CCNNGG	6 cut(s)	183, 346, 436, 570, 1562, 2541
BssNI	GRCGYC	1 cut(s)	82
BssT1I	CCWWGG	1 cut(s)	2541
Bst2UI	CCWGG	1 cut(s)	1563
Bst4CI	ACNGT	6 cut(s)	847, 1018, 1830, 1878, 1988, 2250
Bst6I	CTCTTC	6 cut(s)	116, 121, 941, 1467, 2355, 2637
BstACI	GRCGYC	1 cut(s)	82
BstAFI	CTTAAG	1 cut(s)	2281
BstBAI	YACGTR	2 cut(s)	508, 1541
BstBI	TTCGAA	1 cut(s)	1804
BstC8I	GCNNGC	4 cut(s)	414, 488, 2523, 2616
BstDSI	CCRYGG	3 cut(s)	183, 570, 2541
BstENI	CCTNNNNNAGG	1 cut(s)	1472
BstF5I	GGATG	7 cut(s)	147, 737, 1007, 1468, 2350, 2469, 2647
BstFNI	CGCG	3 cut(s)	77, 572, 1329
BstH2I	RGCGCY	1 cut(s)	2295
BstHHI	GCGC	3 cut(s)	679, 1331, 2294
BstMAI	GTCTC	3 cut(s)	1604, 2357, 2486
BstMCI	CGRYCG	2 cut(s)	230, 352
BstNI	CCWGG	1 cut(s)	1563
BstNSI	RCATGY	2 cut(s)	2099, 2618
BstPAI	GACNNNNGTC	1 cut(s)	2242
BstSCI	CCNGG	6 cut(s)	303, 346, 435, 436, 1375, 1561
BstUI	CGCG	3 cut(s)	77, 572, 1329
BstV1I	GCAGC	6 cut(s)	1577, 1580, 1583, 1586, 1589, 1973
BstX2I	RGATCY	5 cut(s)	309, 357, 604, 1231, 2077
BstXI	CCANNNNNNTGG	2 cut(s)	1018, 1190
BstYI	RGATCY	5 cut(s)	309, 357, 604, 1231, 2077
BstZI	CGGCCG	2 cut(s)	227, 349
Bsu36I	CCTNAGG	1 cut(s)	2394
BsuRI	GGCC	9 cut(s)	50, 221, 229, 351, 986, 1075, 1545, 1896, 2120
BtgI	CCRYGG	3 cut(s)	183, 570, 2541
BtgZI	GCGATG	1 cut(s)	309
BtrI	CACGTC	1 cut(s)	1837
BtsCI	GGATG	7 cut(s)	147, 737, 1007, 1468, 2350, 2469, 2647
BtsIMutI	CAGTG	2 cut(s)	1953, 1993
Cac8I	GCNNGC	4 cut(s)	414, 488, 2523, 2616
CaiI	CAGNNNCTG	1 cut(s)	2639
CciI	TCATGA	1 cut(s)	2308
CfoI	GCGC	3 cut(s)	679, 1331, 2294
Cfr10I	RCCGGY	1 cut(s)	2069
Cfr13I	GGNCC	5 cut(s)	205, 686, 1223, 1682, 2118
Cfr42I	CCGCGG	1 cut(s)	573
Cfr9I	CCCGGG	1 cut(s)	436
CseI	GACGC	2 cut(s)	71, 165
Csp6I	GTAC	3 cut(s)	664, 1089, 2735
CspAI	ACCGGT	1 cut(s)	2069
CspCI	CAANNNNNGTGG	2 cut(s)	1094, 1129
CviQI	GTAC	3 cut(s)	664, 1089, 2735
DraI	TTTAAA	2 cut(s)	385, 2332
EaeI	YGGCCR	3 cut(s)	48, 227, 349
EagI	CGGCCG	2 cut(s)	227, 349
Eam1104I	CTCTTC	6 cut(s)	116, 121, 941, 1467, 2355, 2637
EarI	CTCTTC	6 cut(s)	116, 121, 941, 1467, 2355, 2637
EciI	GGCGGA	1 cut(s)	1955
EclXI	CGGCCG	2 cut(s)	227, 349
Eco130I	CCWWGG	1 cut(s)	2541
Eco147I	AGGCCT	1 cut(s)	1896
Eco24I	GRGCYC	1 cut(s)	305
Eco31I	GGTCTC	2 cut(s)	2357, 2486
Eco32I	GATATC	1 cut(s)	535
Eco47I	GGWCC	4 cut(s)	205, 686, 1223, 1682
Eco52I	CGGCCG	2 cut(s)	227, 349
Eco57I	CTGAAG	3 cut(s)	545, 2261, 2661
Eco81I	CCTNAGG	1 cut(s)	2394
Eco88I	CYCGRG	3 cut(s)	161, 209, 436
EcoNI	CCTNNNNNAGG	1 cut(s)	1472
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	1561
EcoRV	GATATC	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	2541
EcoT22I	ATGCAT	3 cut(s)	1339, 1756, 2620
EcoT38I	GRGCYC	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	2541
FalI	AAGNNNNNCTT	4 cut(s)	1497, 1529, 2312, 2344
FaqI	GGGAC	3 cut(s)	1405, 2117, 2421
FauI	CCCGC	1 cut(s)	243
FbaI	TGATCA	2 cut(s)	744, 1438
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	9 cut(s)	292, 570, 1591, 1594, 1597, 1600, 1603, 1962, 2538
FokI	GGATG	7 cut(s)	134, 724, 994, 1475, 2357, 2456, 2634
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	9 cut(s)	292, 570, 1591, 1594, 1597, 1600, 1603, 1962, 2538
FspBI	CTAG	3 cut(s)	588, 2492, 2531
FspI	TGCGCA	1 cut(s)	678
GlaI	GCGC	3 cut(s)	678, 1330, 2293
GluI	GCNGC	9 cut(s)	292, 570, 1591, 1594, 1597, 1600, 1603, 1962, 2538
GsaI	CCCAGC	3 cut(s)	1698, 1907, 1980
GsuI	CTGGAG	5 cut(s)	20, 1434, 1764, 2601, 2715
HaeII	RGCGCY	1 cut(s)	2295
HaeIII	GGCC	9 cut(s)	50, 221, 229, 351, 986, 1075, 1545, 1896, 2120
HapII	CCGG	7 cut(s)	305, 348, 352, 437, 1377, 2070, 2185
HgaI	GACGC	2 cut(s)	71, 165
HhaI	GCGC	3 cut(s)	679, 1331, 2294
Hin1I	GRCGYC	1 cut(s)	82
Hin6I	GCGC	3 cut(s)	677, 1329, 2292
HinP1I	GCGC	3 cut(s)	677, 1329, 2292
HincII	GTYRAC	1 cut(s)	1854
HindII	GTYRAC	1 cut(s)	1854
HindIII	AAGCTT	1 cut(s)	764
HinfI	GANTC	8 cut(s)	21, 1612, 2193, 2312, 2585, 2623, 2636, 2690
HpaII	CCGG	7 cut(s)	305, 348, 352, 437, 1377, 2070, 2185
HphI	GGTGA	6 cut(s)	385, 529, 1072, 1657, 1957, 2045
Hpy99I	CGWCG	2 cut(s)	181, 2007
HpyAV	CCTTC	8 cut(s)	244, 372, 513, 982, 997, 1499, 2085, 2543
HpyCH4III	ACNGT	6 cut(s)	847, 1018, 1830, 1878, 1988, 2250
HpyCH4IV	ACGT	5 cut(s)	507, 1540, 1836, 2002, 2410
HpySE526I	ACGT	5 cut(s)	507, 1540, 1836, 2002, 2410
Hsp92I	GRCGYC	1 cut(s)	82
HspAI	GCGC	3 cut(s)	677, 1329, 2292
Ksp22I	TGATCA	2 cut(s)	744, 1438
KspI	CCGCGG	1 cut(s)	573
LguI	GCTCTTC	1 cut(s)	2637
Lsp1109I	GCAGC	6 cut(s)	1577, 1580, 1583, 1586, 1589, 1973
LweI	GCATC	9 cut(s)	156, 339, 1010, 1156, 1346, 1447, 1741, 2229, 2656
MaeI	CTAG	3 cut(s)	588, 2492, 2531
MaeII	ACGT	5 cut(s)	507, 1540, 1836, 2002, 2410
MaeIII	GTNAC	8 cut(s)	83, 1060, 1256, 1982, 2180, 2244, 2560, 2714
MbiI	CCGCTC	2 cut(s)	18, 291
MfeI	CAATTG	2 cut(s)	672, 2136
MflI	RGATCY	5 cut(s)	309, 357, 604, 1231, 2077
MhlI	GDGCHC	3 cut(s)	305, 1482, 1869
MlyI	GAGTC	3 cut(s)	1606, 2594, 2699
MmeI	TCCRAC	3 cut(s)	973, 1897, 2497
Mph1103I	ATGCAT	3 cut(s)	1339, 1756, 2620
MroXI	GAANNNNTTC	2 cut(s)	254, 2324
MseI	TTAA	7 cut(s)	384, 1370, 1488, 1890, 2282, 2331, 2573
MslI	CAYNNNNRTG	3 cut(s)	50, 1016, 2343
MspA1I	CMGCKG	1 cut(s)	572
MspCI	CTTAAG	1 cut(s)	2281
MspI	CCGG	7 cut(s)	305, 348, 352, 437, 1377, 2070, 2185
MspR9I	CCNGG	6 cut(s)	305, 348, 437, 438, 1377, 1563
MunI	CAATTG	2 cut(s)	672, 2136
MvaI	CCWGG	1 cut(s)	1563
MvnI	CGCG	3 cut(s)	77, 572, 1329
NciI	CCSGG	5 cut(s)	305, 348, 437, 438, 1377
NcoI	CCATGG	1 cut(s)	2541
NlaIV	GGNNCC	6 cut(s)	97, 207, 302, 2119, 2213, 2608
NmeAIII	GCCGAG	1 cut(s)	962
NmuCI	GTSAC	6 cut(s)	83, 1060, 1256, 2180, 2244, 2714
NsbI	TGCGCA	1 cut(s)	678
NsiI	ATGCAT	3 cut(s)	1339, 1756, 2620
NspI	RCATGY	2 cut(s)	2099, 2618
NspV	TTCGAA	1 cut(s)	1804
OliI	CACNNNNGTG	1 cut(s)	1016
PaeI	GCATGC	1 cut(s)	2618
PaeR7I	CTCGAG	1 cut(s)	161
PagI	TCATGA	1 cut(s)	2308
PceI	AGGCCT	1 cut(s)	1896
PciSI	GCTCTTC	1 cut(s)	2637
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 185
PdmI	GAANNNNTTC	2 cut(s)	254, 2324
PfeI	GAWTC	5 cut(s)	21, 2193, 2312, 2623, 2636
PflMI	CCANNNNNTGG	2 cut(s)	1742, 2158
PinAI	ACCGGT	1 cut(s)	2069
PkrI	GCNGC	9 cut(s)	293, 571, 1592, 1595, 1598, 1601, 1604, 1963, 2539
PleI	GAGTC	3 cut(s)	1606, 2593, 2698
PpsI	GAGTC	3 cut(s)	1606, 2593, 2698
Ppu21I	YACGTR	2 cut(s)	508, 1541
PpuMI	RGGWCCY	1 cut(s)	205
PshAI	GACNNNNGTC	1 cut(s)	2242
Psp5II	RGGWCCY	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	1561
PspFI	CCCAGC	3 cut(s)	1694, 1903, 1976
PspGI	CCWGG	1 cut(s)	1561
PspN4I	GGNNCC	6 cut(s)	97, 207, 302, 2119, 2213, 2608
PspPI	GGNCC	5 cut(s)	205, 686, 1223, 1682, 2118
PspPPI	RGGWCCY	1 cut(s)	205
PspXI	VCTCGAGB	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	2639
PsuI	RGATCY	5 cut(s)	309, 357, 604, 1231, 2077
RsaI	GTAC	3 cut(s)	665, 1090, 2736
RsaNI	GTAC	3 cut(s)	664, 1089, 2735
RseI	CAYNNNNRTG	3 cut(s)	50, 1016, 2343
SacII	CCGCGG	1 cut(s)	573
SapI	GCTCTTC	1 cut(s)	2637
SaqAI	TTAA	7 cut(s)	384, 1370, 1488, 1890, 2282, 2331, 2573
SatI	GCNGC	9 cut(s)	292, 570, 1591, 1594, 1597, 1600, 1603, 1962, 2538
Sau96I	GGNCC	5 cut(s)	205, 686, 1223, 1682, 2118
SchI	GAGTC	3 cut(s)	1606, 2594, 2699
ScrFI	CCNGG	6 cut(s)	305, 348, 437, 438, 1377, 1563
SduI	GDGCHC	3 cut(s)	305, 1482, 1869
SfaNI	GCATC	9 cut(s)	156, 339, 1010, 1156, 1346, 1447, 1741, 2229, 2656
Sfr274I	CTCGAG	1 cut(s)	161
Sfr303I	CCGCGG	1 cut(s)	573
SfuI	TTCGAA	1 cut(s)	1804
SgrBI	CCGCGG	1 cut(s)	573
SinI	GGWCC	4 cut(s)	205, 686, 1223, 1682
SlaI	CTCGAG	1 cut(s)	161
SmaI	CCCGGG	1 cut(s)	438
SmiMI	CAYNNNNRTG	3 cut(s)	50, 1016, 2343
SmlI	CTYRAG	2 cut(s)	161, 2281
SmoI	CTYRAG	2 cut(s)	161, 2281
SphI	GCATGC	1 cut(s)	2618
SseBI	AGGCCT	1 cut(s)	1896
SspI	AATATT	2 cut(s)	1801, 2746
SspMI	CTAG	3 cut(s)	588, 2492, 2531
StuI	AGGCCT	1 cut(s)	1896
StyD4I	CCNGG	6 cut(s)	303, 346, 435, 436, 1375, 1561
StyI	CCWWGG	1 cut(s)	2541
TaaI	ACNGT	6 cut(s)	847, 1018, 1830, 1878, 1988, 2250
TaiI	ACGT	5 cut(s)	510, 1543, 1839, 2005, 2413
TaqI	TCGA	5 cut(s)	162, 365, 769, 1317, 1804
TaqII	GACCGA	1 cut(s)	2381
TatI	WGTACW	1 cut(s)	663
TauI	GCSGC	3 cut(s)	294, 572, 2540
TfiI	GAWTC	5 cut(s)	21, 2193, 2312, 2623, 2636
Tru1I	TTAA	7 cut(s)	384, 1370, 1488, 1890, 2282, 2331, 2573
Tru9I	TTAA	7 cut(s)	384, 1370, 1488, 1890, 2282, 2331, 2573
TscAI	CASTG	2 cut(s)	1960, 1993
TseFI	GTSAC	6 cut(s)	83, 1060, 1256, 2180, 2244, 2714
TseI	GCWGC	6 cut(s)	1590, 1593, 1596, 1599, 1602, 1961
Tsp45I	GTSAC	6 cut(s)	83, 1060, 1256, 2180, 2244, 2714
TspGWI	ACGGA	2 cut(s)	1704, 2204
TspMI	CCCGGG	1 cut(s)	436
TspRI	CASTG	2 cut(s)	1960, 1993
Van91I	CCANNNNNTGG	2 cut(s)	1742, 2158
Vha464I	CTTAAG	1 cut(s)	2281
VpaK11BI	GGWCC	4 cut(s)	205, 686, 1223, 1682
XagI	CCTNNNNNAGG	1 cut(s)	1472
XapI	RAATTY	7 cut(s)	545, 552, 610, 638, 1067, 2419, 2453
XbaI	TCTAGA	1 cut(s)	2491
XceI	RCATGY	2 cut(s)	2099, 2618
XhoI	CTCGAG	1 cut(s)	161
XmaI	CCCGGG	1 cut(s)	436
XmiI	GTMKAC	1 cut(s)	402
XmnI	GAANNNNTTC	2 cut(s)	254, 2324
XspI	CTAG	3 cut(s)	588, 2492, 2531
Zsp2I	ATGCAT	3 cut(s)	1339, 1756, 2620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.