Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000888.1

Orthogroup ID

OG0000771

Physical Location & Seq

Genomic Coordinates Forward (+)

1440 .. 2639

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000888.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atgaggtcactgaccggttttccgctactgctgcaacaattcaaggctctgttcaacaagaacctcctcctcgcatggcgcaacaagtccgccacctttctccagctcctctctcccttattcttcatcttcctcatcttctgcttccagaaggcctacgacgctcagactcagtcttccactgcgtaccggagcgtcaccgatcctcagccgctggtttccccgccgatcccgccctgcgaggacaagttctctatcaaaacgccgtgctatgatttcgtgtggagcggagatcagagccctaggattcggagcgttgtcgatgccatcatggctaataatcccggaaggccaatcccggcgacaaaggttaaatcgtttagaaccccggctgaagtagatgaatggctgtataagaatcctttgtattgcccaggagctttgcattttgtggaaagaaatgccactgtgattagctatggcctgcagactaattatacttctgttgaaaaacaagggaaaactgaggatcccacattcaaatttcaaattccacttcagattgctgtggagcgtgagattgctaggtctctaattggaggttcaaaatttagctgggttgttgcattcaaggaatttgcacaccctgcaatggagaggccttctgcaatcgatgacatgggaccaaggttttttttcgcagctgccatgtttggttttgtctttcaaatgacttctttgatcacagagaaagaacttaagctgcgacaggtaatcacgttaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

262

Amino Acids

29.76

Weight (kDa)

9.24

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47730 AT5G61690 AT5G61690 AT5G61730 AT5G61730
fragaria_vesca	FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_5g15280 FvH4_5g17010 FvH4_5g17010 FvH4_5g17010
malus_domestica	MD00G1160200.v1.1 MD11G1124700.v1.1
prunus_persica	Prupe.5G188400_v2.0.a1 Prupe.5G229500_v2.0.a1 Prupe.6G093200_v2.0.a1 Prupe.6G093200_v2.0.a1
pyrus_communis	pycom06g19960 pycom11g10520
rosa_chinensis	RchiOBHm_Chr5g0061021 RchiOBHm_Chr7g0178841 RchiOBHm_Chr7g0180781
rosa_laevigata	RLG00000005230 RLG00000005399 RLG00000005401 RLG00000005403 RLG00000005405 RLG00000035420
rosa_multiflora	Rmu_co8148594.1_g000001 Rmu_co8316781.1_g000001 Rmu_co8482325.1_g000001 Rmu_co8514565.1_g000001 Rmu_sc0000888.1_g000001 Rmu_sc0007457.1_g000010 Rmu_sc0026332.1_g000001 Rmu_ssc0000131.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019630 Rroxscaffold_3G00272530 Rroxscaffold_3G00274500
rosa_rugosa	Rorug01G0114900 Rorug01G0115000 Rorug05G0336100 Rorug06G0420200 Rorug06G0420200 Rorug06G0420300 Rorug06G0420300 Rorug06G0436000
rosa_samantha	Rh1BG106800 Rh5AG398400 Rh5BG411300 Rh5CG436300 Rh5DG425700 Rh7AG019700 Rh7AG037700 Rh7BG019100 Rh7BG037400 Rh7CG019800 Rh7CG039100 Rh7DG019700
rosa_wichuraiana	Rw5G037560 Rw7G001590 Rw7G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	288
AciI	CCGC	6 cut(s)	23, 90, 212, 224, 233, 288
AclWI	GGATC	4 cut(s)	197, 223, 524, 537
AcsI	RAATTY	4 cut(s)	542, 549, 608, 635
AcuI	CTGAAG	2 cut(s)	414, 542
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	652
AflII	CTTAAG	1 cut(s)	758
AgeI	ACCGGT	1 cut(s)	14
AgsI	TTSAA	8 cut(s)	43, 55, 509, 541, 548, 606, 631, 728
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	6 cut(s)	106, 440, 477, 615, 704, 763
AluI	AGCT	6 cut(s)	106, 440, 477, 615, 704, 763
Alw26I	GTCTC	1 cut(s)	594
AlwI	GGATC	4 cut(s)	197, 223, 524, 537
AlwNI	CAGNNNCTG	1 cut(s)	214
AoxI	GGCC	4 cut(s)	153, 350, 481, 659
ApeKI	GCWGC	4 cut(s)	31, 701, 704, 763
ApoI	RAATTY	4 cut(s)	542, 549, 608, 635
AsiGI	ACCGGT	1 cut(s)	14
AspA2I	CCTAGG	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	683
AsuC2I	CCSGG	3 cut(s)	345, 359, 389
AsuHPI	GGTGA	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	683
AvrII	CCTAGG	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	529
BanII	GRGCYC	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	168
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	4 cut(s)	18, 691, 713, 750
BccI	CCATC	1 cut(s)	335
BceAI	ACGGC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	435
BclI	TGATCA	1 cut(s)	741
BcnI	CCSGG	3 cut(s)	345, 359, 389
BcoDI	GTCTC	1 cut(s)	594
BfaI	CTAG	2 cut(s)	303, 585
BfmI	CTRYAG	1 cut(s)	485
BfrI	CTTAAG	1 cut(s)	758
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	5 cut(s)	32, 212, 702, 705, 764
BlnI	CCTAGG	1 cut(s)	302
BlsI	GCNGC	5 cut(s)	33, 213, 703, 706, 765
Bme1390I	CCNGG	4 cut(s)	345, 359, 389, 435
Bme18I	GGWCC	1 cut(s)	683
BmgT120I	GGNCC	1 cut(s)	683
BmiI	GGNNCC	2 cut(s)	531, 684
BmrFI	CCNGG	4 cut(s)	345, 359, 389, 435
BmsI	GCATC	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	207
BpuMI	CCSGG	3 cut(s)	345, 359, 389
Bsa29I	ATCGAT	1 cut(s)	672
BsaI	GGTCTC	1 cut(s)	594
BsaJI	CCNNGG	4 cut(s)	302, 387, 433, 686
BsaWI	WCCGGW	2 cut(s)	14, 189
Bsc4I	CCNNNNNNNGG	1 cut(s)	652
Bse118I	RCCGGY	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	657
BseBI	CCWGG	1 cut(s)	435
BseCI	ATCGAT	1 cut(s)	672
BseDI	CCNNGG	4 cut(s)	302, 387, 433, 686
BseLI	CCNNNNNNNGG	1 cut(s)	652
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	4 cut(s)	179, 185, 221, 516
BseRI	GAGGAG	3 cut(s)	56, 59, 98
BseXI	GCAGC	4 cut(s)	18, 691, 713, 750
BseYI	CCCAGC	1 cut(s)	615
BshFI	GGCC	4 cut(s)	155, 352, 483, 661
BshTI	ACCGGT	1 cut(s)	14
BshVI	ATCGAT	1 cut(s)	672
BsiSI	CCGG	5 cut(s)	15, 190, 345, 359, 389
BslFI	GGGAC	1 cut(s)	696
BslI	CCNNNNNNNGG	1 cut(s)	652
BsmAI	GTCTC	1 cut(s)	594
BsmFI	GGGAC	1 cut(s)	696
BsmI	GAATGC	1 cut(s)	626
BsnI	GGCC	4 cut(s)	155, 352, 483, 661
Bso31I	GGTCTC	1 cut(s)	594
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	5 cut(s)	202, 228, 292, 529, 741
BspACI	CCGC	6 cut(s)	23, 90, 212, 224, 233, 288
BspANI	GGCC	4 cut(s)	155, 352, 483, 661
BspCNI	CTCAG	4 cut(s)	178, 184, 220, 517
BspDI	ATCGAT	1 cut(s)	672
BspLI	GGNNCC	2 cut(s)	531, 684
BspMAI	CTGCAG	1 cut(s)	489
BspPI	GGATC	4 cut(s)	197, 223, 524, 537
BspTI	CTTAAG	1 cut(s)	758
BspTNI	GGTCTC	1 cut(s)	594
BsrBI	CCGCTC	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	657
BsrFI	RCCGGY	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	4 cut(s)	302, 387, 433, 686
BssMI	GATC	5 cut(s)	202, 228, 292, 529, 741
BssT1I	CCWWGG	2 cut(s)	302, 686
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	469
BstAFI	CTTAAG	1 cut(s)	758
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	4 cut(s)	165, 171, 207, 525
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	5 cut(s)	205, 231, 295, 532, 744
BstMAI	GTCTC	1 cut(s)	594
BstMBI	GATC	5 cut(s)	202, 228, 292, 529, 741
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 161, 232, 332, 647
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	4 cut(s)	343, 357, 387, 433
BstSFI	CTRYAG	1 cut(s)	485
BstV1I	GCAGC	4 cut(s)	18, 691, 713, 750
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
Bsu15I	ATCGAT	1 cut(s)	672
BsuRI	GGCC	4 cut(s)	155, 352, 483, 661
BsuTUI	ATCGAT	1 cut(s)	672
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	3 cut(s)	8, 180, 465
Cac8I	GCNNGC	1 cut(s)	485
CaiI	CAGNNNCTG	1 cut(s)	214
CfoI	GCGC	1 cut(s)	81
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	683
ClaI	ATCGAT	1 cut(s)	672
CseI	GACGC	2 cut(s)	170, 184
Csp6I	GTAC	1 cut(s)	187
CspAI	ACCGGT	1 cut(s)	14
CviAII	CATG	4 cut(s)	75, 331, 679, 709
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	4 cut(s)	165, 171, 207, 525
DpnI	GATC	5 cut(s)	204, 230, 294, 531, 743
DpnII	GATC	5 cut(s)	202, 228, 292, 529, 741
EciI	GGCGGA	1 cut(s)	79
Eco130I	CCWWGG	2 cut(s)	302, 686
Eco147I	AGGCCT	2 cut(s)	155, 661
Eco24I	GRGCYC	1 cut(s)	302
Eco31I	GGTCTC	1 cut(s)	594
Eco47I	GGWCC	1 cut(s)	683
Eco57I	CTGAAG	2 cut(s)	414, 542
EcoRII	CCWGG	1 cut(s)	433
EcoT14I	CCWWGG	2 cut(s)	302, 686
EcoT38I	GRGCYC	1 cut(s)	302
ErhI	CCWWGG	2 cut(s)	302, 686
FaeI	CATG	4 cut(s)	78, 334, 682, 712
FaiI	YATR	8 cut(s)	76, 273, 332, 414, 480, 498, 680, 710
FaqI	GGGAC	1 cut(s)	696
FatI	CATG	4 cut(s)	74, 330, 678, 708
FauI	CCCGC	2 cut(s)	231, 240
FbaI	TGATCA	1 cut(s)	741
Fnu4HI	GCNGC	5 cut(s)	32, 212, 702, 705, 764
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	5 cut(s)	32, 212, 702, 705, 764
FspBI	CTAG	2 cut(s)	303, 585
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	5 cut(s)	32, 212, 702, 705, 764
GsaI	CCCAGC	1 cut(s)	619
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	4 cut(s)	155, 352, 483, 661
HapII	CCGG	5 cut(s)	15, 190, 345, 359, 389
HgaI	GACGC	2 cut(s)	170, 184
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	4 cut(s)	78, 334, 682, 712
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	3 cut(s)	169, 307, 418
HpaII	CCGG	5 cut(s)	15, 190, 345, 359, 389
HphI	GGTGA	1 cut(s)	190
Hpy188I	TCNGA	4 cut(s)	168, 297, 312, 561
Hpy188III	TCNNGA	1 cut(s)	148
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	3 cut(s)	145, 342, 672
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	1 cut(s)	779
HpyCH4V	TGCA	7 cut(s)	34, 445, 487, 626, 641, 650, 668
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 161, 232, 332, 647
HpyF3I	CTNAG	4 cut(s)	165, 171, 207, 525
HpySE526I	ACGT	1 cut(s)	779
Hsp92II	CATG	4 cut(s)	78, 334, 682, 712
HspAI	GCGC	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	741
Kzo9I	GATC	5 cut(s)	202, 228, 292, 529, 741
LmnI	GCTCC	6 cut(s)	111, 192, 285, 312, 437, 571
Lsp1109I	GCAGC	4 cut(s)	18, 691, 713, 750
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	2 cut(s)	303, 585
MaeII	ACGT	1 cut(s)	779
MaeIII	GTNAC	2 cut(s)	6, 196
MalI	GATC	5 cut(s)	204, 230, 294, 531, 743
MbiI	CCGCTC	1 cut(s)	288
MboI	GATC	5 cut(s)	202, 228, 292, 529, 741
MboII	GAAGA	4 cut(s)	115, 121, 130, 168
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	1 cut(s)	302
MluCI	AATT	7 cut(s)	38, 493, 542, 549, 594, 608, 635
MlyI	GAGTC	1 cut(s)	163
MseI	TTAA	3 cut(s)	372, 759, 782
MspA1I	CMGCKG	2 cut(s)	214, 704
MspCI	CTTAAG	1 cut(s)	758
MspI	CCGG	5 cut(s)	15, 190, 345, 359, 389
MspR9I	CCNGG	4 cut(s)	345, 359, 389, 435
Mva1269I	GAATGC	1 cut(s)	626
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	5 cut(s)	31, 161, 232, 332, 647
NciI	CCSGG	3 cut(s)	345, 359, 389
NdeII	GATC	5 cut(s)	202, 228, 292, 529, 741
NlaIII	CATG	4 cut(s)	78, 334, 682, 712
NlaIV	GGNNCC	2 cut(s)	531, 684
NmuCI	GTSAC	2 cut(s)	6, 196
PceI	AGGCCT	2 cut(s)	155, 661
PctI	GAATGC	1 cut(s)	626
PfeI	GAWTC	2 cut(s)	307, 418
PflFI	GACNNNGTC	1 cut(s)	172
PfoI	TCCNGGA	1 cut(s)	343
PinAI	ACCGGT	1 cut(s)	14
PkrI	GCNGC	5 cut(s)	33, 213, 703, 706, 765
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	433
PspFI	CCCAGC	1 cut(s)	615
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	2 cut(s)	531, 684
PspPI	GGNCC	1 cut(s)	683
PstI	CTGCAG	1 cut(s)	489
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	529
PsyI	GACNNNGTC	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	704
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SaqAI	TTAA	3 cut(s)	372, 759, 782
SatI	GCNGC	5 cut(s)	32, 212, 702, 705, 764
Sau3AI	GATC	5 cut(s)	202, 228, 292, 529, 741
Sau96I	GGNCC	1 cut(s)	683
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	4 cut(s)	345, 359, 389, 435
SduI	GDGCHC	1 cut(s)	302
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	485
SinI	GGWCC	1 cut(s)	683
SmlI	CTYRAG	1 cut(s)	758
SmoI	CTYRAG	1 cut(s)	758
Sse9I	AATT	7 cut(s)	38, 493, 542, 549, 594, 608, 635
SseBI	AGGCCT	2 cut(s)	155, 661
SsiI	CCGC	6 cut(s)	23, 90, 212, 224, 233, 288
SspMI	CTAG	2 cut(s)	303, 585
StuI	AGGCCT	2 cut(s)	155, 661
StyD4I	CCNGG	4 cut(s)	343, 357, 387, 433
StyI	CCWWGG	2 cut(s)	302, 686
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	1 cut(s)	782
TaqI	TCGA	2 cut(s)	321, 672
TasI	AATT	7 cut(s)	38, 493, 542, 549, 594, 608, 635
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	2 cut(s)	307, 418
Tru1I	TTAA	3 cut(s)	372, 759, 782
Tru9I	TTAA	3 cut(s)	372, 759, 782
TscAI	CASTG	3 cut(s)	15, 187, 472
TseFI	GTSAC	2 cut(s)	6, 196
TseI	GCWGC	4 cut(s)	31, 701, 704, 763
Tsp45I	GTSAC	2 cut(s)	6, 196
TspDTI	ATGAA	2 cut(s)	115, 417
TspRI	CASTG	3 cut(s)	15, 187, 472
Tth111I	GACNNNGTC	1 cut(s)	172
Vha464I	CTTAAG	1 cut(s)	758
VpaK11BI	GGWCC	1 cut(s)	683
XapI	RAATTY	4 cut(s)	542, 549, 608, 635
XmaJI	CCTAGG	1 cut(s)	302
XspI	CTAG	2 cut(s)	303, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.