FvH4_5g18391

Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate- level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
10570607 .. 10573990
3384 bp
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UTR
Exon/CDS
Intron
FvH4_5g18391.t1

Sequence Viewer

Length: 1014 bp
ATGGCTCGCCAATCCGTTGCCAAGCTGATCGGCTCGATCGCATCACGCAAGCTTTCATCACCATCTACGTCAACGACGTCAATTATTCAGCGCCGTCACTACGCCGCCGCCCCGCCGCCCCCGGCTGTCTTCGTCGACAAAAACACTCGCGTCATTTGCCAGGGAATCACAGGAAAGAACGGCACCTTCCACACCGAACAAGCCATCGAGTATGGCACTAAAATGGTGGGTGGTGTTACTCCAAAGAAGGGCGGGACCGAGCATTTGGGACTTCCAGTCTTCAATTCAGTGGTGGAAGCAAAGGCCGAAACAAAGGCTAATGCAACGGTGATCTATGTTCCTCCACCATTTGCTGCCGCTGCAATTATGGAAGCAATGGAAGCTGAGCTGGATCTTGTTGTGTGCATCACTGAGGGGATCCCGCAACATGATATGGTACGTGTGAAAGCTGCACTTAACAGCCAATCTAAAACTCGGCTCATTGGACCAAATTGCCCTGGAATTATCAAGCCTGGTGAATGCAAAATTGGAATTATGCCTGGCTACATTCATAAACCAGGTCGTGTGGGAATTGTTTCTCGATCTGGTACCTTGACTTATGAAGCGGTTTTCCAAACAACTGCCGTTGGCCTTGGACAATCCACTTGCGTTGGTATTGGGGGTGATCCTTTCAATGGTACAAACTTTGTTGATTGCATGGAAAAATTCTTAGCAGATCCTCAGACAGAAGGTATTGTTCTGATAGGAGAGATTGGTGGGACTGCAGAAGAGGATGCCGCCGCATTGATAAAGGCAAGTGGAACTGAGAAGCCAATTGTTGCATTTATTGCTGGACTAACTGCTCCCCCTGGTCGGCGTATGGGTCATGCAGGAGCTATTGTATCGGGTGGAAAGGGTACCGCACAAGATAAAATCAAGACTCTTAGAGAAGCTGGGGTTACAGTGGTGGAGTCTCCGGCAAAAATTGGGGTTGCCATGCTTGATGTGTTCAAGCAGAGGGGACTAGTGAACTAG

Protein Analysis

338

Amino Acids

35.03

Weight (kDa)

9.06

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CoA_binding PF02629 46 - 139 1e-32 CoA binding domain
Succ_CoA_lig PF13607 186 - 320 3.2e-11 Succinyl-CoA ligase like flavodoxin domain
Ligase_CoA PF00549 192 - 313 2.4e-30 CoA-ligase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 80
Acc65I GGTACC 2 cut(s) 587, 896
AccB1I GGYRCC 3 cut(s) 182, 587, 896
AccI GTMKAC 1 cut(s) 135
AccII CGCG 1 cut(s) 150
AclWI GGATC 5 cut(s) 399, 412, 425, 659, 710
AcsI RAATTY 1 cut(s) 704
AcyI GRCGYC 1 cut(s) 77
AfaI GTAC 4 cut(s) 438, 589, 679, 898
AfiI CCNNNNNNNGG 3 cut(s) 248, 674, 852
AflIII ACRYGT 1 cut(s) 439
AgsI TTSAA 3 cut(s) 283, 673, 991
AhdI GACNNNNNGTC 1 cut(s) 275
AhlI ACTAGT 1 cut(s) 1003
AjnI CCWGG 6 cut(s) 159, 496, 511, 538, 556, 847
AjuI GAANNNNNNNTTGG 2 cut(s) 510, 542
AluBI AGCT 7 cut(s) 25, 52, 383, 388, 449, 875, 932
AluI AGCT 7 cut(s) 25, 52, 383, 388, 449, 875, 932
Alw26I GTCTC 1 cut(s) 957
AlwI GGATC 5 cut(s) 399, 412, 425, 659, 710
AoxI GGCC 2 cut(s) 303, 628
ApeKI GCWGC 3 cut(s) 353, 359, 449
ApoI RAATTY 1 cut(s) 704
ArsI GACNNNNNNTTYG 2 cut(s) 247, 279
Asp700I GAANNNNTTC 1 cut(s) 574
Asp718I GGTACC 2 cut(s) 587, 896
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 2 cut(s) 255, 485
AsuC2I CCSGG 1 cut(s) 122
AsuHPI GGTGA 4 cut(s) 51, 340, 527, 674
AvaII GGWCC 2 cut(s) 255, 485
BamHI GGATCC 1 cut(s) 417
BanI GGYRCC 3 cut(s) 182, 587, 896
BbsI GAAGAC 2 cut(s) 121, 271
BbvI GCAGC 3 cut(s) 340, 346, 436
BccI CCATC 2 cut(s) 70, 212
BceAI ACGGC 3 cut(s) 78, 196, 608
BciT130I CCWGG 6 cut(s) 161, 498, 513, 540, 558, 849
BcnI CCSGG 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 957
BcuI ACTAGT 1 cut(s) 1003
BfaI CTAG 2 cut(s) 1004, 1012
BfmI CTRYAG 1 cut(s) 762
BfoI RGCGCY 1 cut(s) 94
BisI GCNGC 9 cut(s) 105, 108, 116, 354, 357, 360, 450, 777, 780
BlpI GCTNAGC 1 cut(s) 384
BlsI GCNGC 9 cut(s) 106, 109, 117, 355, 358, 361, 451, 778, 781
Bme1390I CCNGG 7 cut(s) 122, 161, 498, 513, 540, 558, 849
Bme18I GGWCC 2 cut(s) 255, 485
BmeRI GACNNNNNGTC 1 cut(s) 275
BmgT120I GGNCC 2 cut(s) 255, 485
BmiI GGNNCC 5 cut(s) 184, 256, 419, 589, 898
BmrFI CCNGG 7 cut(s) 122, 161, 498, 513, 540, 558, 849
BmsI GCATC 3 cut(s) 50, 414, 763
BpiI GAAGAC 2 cut(s) 121, 271
Bpu1102I GCTNAGC 1 cut(s) 384
BpuMI CCSGG 1 cut(s) 122
BsaAI YACGTR 1 cut(s) 440
BsaHI GRCGYC 1 cut(s) 77
BsaJI CCNNGG 5 cut(s) 120, 160, 496, 631, 847
BsaXI ACNNNNNCTCC 2 cut(s) 864, 894
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 674, 852
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 381
BseBI CCWGG 6 cut(s) 161, 498, 513, 540, 558, 849
BseDI CCNNGG 5 cut(s) 120, 160, 496, 631, 847
BseGI GGATG 1 cut(s) 778
BseLI CCNNNNNNNGG 3 cut(s) 248, 674, 852
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 4 cut(s) 375, 402, 734, 795
BseNI ACTGG 1 cut(s) 275
BseXI GCAGC 3 cut(s) 340, 346, 436
BseYI CCCAGC 1 cut(s) 932
BsgI GTGCAG 1 cut(s) 435
Bsh1236I CGCG 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 2 cut(s) 305, 630
BshNI GGYRCC 3 cut(s) 182, 587, 896
BsiEI CGRYCG 1 cut(s) 39
BsiSI CCGG 2 cut(s) 122, 956
BslFI GGGAC 3 cut(s) 268, 282, 772
BslI CCNNNNNNNGG 3 cut(s) 248, 674, 852
BsmAI GTCTC 1 cut(s) 957
BsmFI GGGAC 3 cut(s) 268, 282, 772
BsmI GAATGC 1 cut(s) 524
BsnI GGCC 2 cut(s) 305, 630
Bsp143I GATC 8 cut(s) 27, 36, 330, 391, 417, 581, 664, 715
Bsp1720I GCTNAGC 1 cut(s) 384
BspANI GGCC 2 cut(s) 305, 630
BspCNI CTCAG 4 cut(s) 376, 403, 733, 796
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 5 cut(s) 184, 256, 419, 589, 898
BspMAI CTGCAG 1 cut(s) 766
BspPI GGATC 5 cut(s) 399, 412, 425, 659, 710
BspT107I GGYRCC 3 cut(s) 182, 587, 896
BsrDI GCAATG 1 cut(s) 381
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 5 cut(s) 120, 160, 496, 631, 847
BssMI GATC 8 cut(s) 27, 36, 330, 391, 417, 581, 664, 715
BssNI GRCGYC 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 631
Bst2UI CCWGG 6 cut(s) 161, 498, 513, 540, 558, 849
Bst4CI ACNGT 2 cut(s) 328, 943
Bst6I CTCTTC 1 cut(s) 762
BstACI GRCGYC 1 cut(s) 77
BstAPI GCANNNNNTGC 1 cut(s) 827
BstBAI YACGTR 1 cut(s) 440
BstC8I GCNNGC 2 cut(s) 7, 50
BstDEI CTNAG 6 cut(s) 384, 411, 709, 720, 804, 923
BstF5I GGATG 1 cut(s) 778
BstFNI CGCG 1 cut(s) 150
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 8 cut(s) 30, 39, 333, 394, 420, 584, 667, 718
BstMAI GTCTC 1 cut(s) 957
BstMBI GATC 8 cut(s) 27, 36, 330, 391, 417, 581, 664, 715
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 4 cut(s) 156, 359, 380, 827
BstNI CCWGG 6 cut(s) 161, 498, 513, 540, 558, 849
BstSCI CCNGG 7 cut(s) 120, 159, 496, 511, 538, 556, 847
BstSFI CTRYAG 1 cut(s) 762
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 3 cut(s) 340, 346, 436
BstV2I GAAGAC 2 cut(s) 121, 271
BstX2I RGATCY 3 cut(s) 391, 417, 715
BstYI RGATCY 3 cut(s) 391, 417, 715
BsuRI GGCC 2 cut(s) 305, 630
BtsCI GGATG 1 cut(s) 778
BtsIMutI CAGTG 3 cut(s) 294, 408, 948
Cac8I GCNNGC 2 cut(s) 7, 50
CfoI GCGC 1 cut(s) 93
Cfr13I GGNCC 2 cut(s) 255, 485
CseI GACGC 1 cut(s) 139
CsiI ACCWGGT 1 cut(s) 556
Csp6I GTAC 4 cut(s) 437, 588, 678, 897
CspCI CAANNNNNGTGG 2 cut(s) 631, 666
CviAII CATG 4 cut(s) 428, 697, 866, 976
CviQI GTAC 4 cut(s) 437, 588, 678, 897
DdeI CTNAG 6 cut(s) 384, 411, 709, 720, 804, 923
DpnI GATC 8 cut(s) 29, 38, 332, 393, 419, 583, 666, 717
DpnII GATC 8 cut(s) 27, 36, 330, 391, 417, 581, 664, 715
DriI GACNNNNNGTC 1 cut(s) 275
Eam1104I CTCTTC 1 cut(s) 762
Eam1105I GACNNNNNGTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 762
Eco130I CCWWGG 1 cut(s) 631
Eco47I GGWCC 2 cut(s) 255, 485
EcoRII CCWGG 6 cut(s) 159, 496, 511, 538, 556, 847
EcoT14I CCWWGG 1 cut(s) 631
ErhI CCWWGG 1 cut(s) 631
FaeI CATG 4 cut(s) 431, 700, 869, 979
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FaqI GGGAC 3 cut(s) 268, 282, 772
FatI CATG 4 cut(s) 427, 696, 865, 975
FauI CCCGC 3 cut(s) 120, 245, 429
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 9 cut(s) 105, 108, 116, 354, 357, 360, 450, 777, 780
FokI GGATG 1 cut(s) 785
Fsp4HI GCNGC 9 cut(s) 105, 108, 116, 354, 357, 360, 450, 777, 780
FspBI CTAG 2 cut(s) 1004, 1012
GlaI GCGC 1 cut(s) 92
GluI GCNGC 9 cut(s) 105, 108, 116, 354, 357, 360, 450, 777, 780
GsaI CCCAGC 1 cut(s) 936
HaeII RGCGCY 1 cut(s) 94
HaeIII GGCC 2 cut(s) 305, 630
HapII CCGG 2 cut(s) 122, 956
HgaI GACGC 1 cut(s) 139
HhaI GCGC 1 cut(s) 93
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 4 cut(s) 431, 700, 869, 979
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HincII GTYRAC 2 cut(s) 72, 136
HindII GTYRAC 2 cut(s) 72, 136
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 3 cut(s) 165, 919, 950
HpaII CCGG 2 cut(s) 122, 956
HphI GGTGA 4 cut(s) 51, 340, 527, 674
Hpy166II GTNNAC 3 cut(s) 72, 136, 1009
Hpy188I TCNGA 2 cut(s) 723, 741
Hpy188III TCNNGA 2 cut(s) 579, 916
Hpy8I GTNNAC 3 cut(s) 72, 136, 1009
Hpy99I CGWCG 2 cut(s) 79, 137
HpyAV CCTTC 3 cut(s) 196, 241, 722
HpyCH4III ACNGT 2 cut(s) 328, 943
HpyCH4IV ACGT 3 cut(s) 68, 77, 439
HpyCH4V TGCA 9 cut(s) 323, 362, 405, 452, 522, 696, 764, 821, 869
HpyF10VI GCNNNNNNNGC 4 cut(s) 156, 359, 380, 827
HpyF3I CTNAG 6 cut(s) 384, 411, 709, 720, 804, 923
HpySE526I ACGT 3 cut(s) 68, 77, 439
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 4 cut(s) 431, 700, 869, 979
HspAI GCGC 1 cut(s) 91
KpnI GGTACC 2 cut(s) 591, 900
Kzo9I GATC 8 cut(s) 27, 36, 330, 391, 417, 581, 664, 715
LmnI GCTCC 2 cut(s) 847, 872
Lsp1109I GCAGC 3 cut(s) 340, 346, 436
LweI GCATC 3 cut(s) 50, 414, 763
MabI ACCWGGT 1 cut(s) 556
MaeI CTAG 2 cut(s) 1004, 1012
MaeII ACGT 3 cut(s) 68, 77, 439
MaeIII GTNAC 3 cut(s) 95, 235, 937
MalI GATC 8 cut(s) 29, 38, 332, 393, 419, 583, 666, 717
MboI GATC 8 cut(s) 27, 36, 330, 391, 417, 581, 664, 715
MboII GAAGA 3 cut(s) 121, 271, 779
MfeI CAATTG 1 cut(s) 813
MflI RGATCY 3 cut(s) 391, 417, 715
MlyI GAGTC 2 cut(s) 913, 959
MnlI CCTC 5 cut(s) 351, 406, 729, 763, 990
MroXI GAANNNNTTC 1 cut(s) 574
MseI TTAA 1 cut(s) 456
MslI CAYNNNNRTG 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 2 cut(s) 122, 956
MspR9I CCNGG 7 cut(s) 122, 161, 498, 513, 540, 558, 849
MunI CAATTG 1 cut(s) 813
Mva1269I GAATGC 1 cut(s) 524
MvaI CCWGG 6 cut(s) 161, 498, 513, 540, 558, 849
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 4 cut(s) 156, 359, 380, 827
NciI CCSGG 1 cut(s) 122
NdeII GATC 8 cut(s) 27, 36, 330, 391, 417, 581, 664, 715
NlaIII CATG 4 cut(s) 431, 700, 869, 979
NlaIV GGNNCC 5 cut(s) 184, 256, 419, 589, 898
NmeAIII GCCGAG 1 cut(s) 454
NmuCI GTSAC 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PctI GAATGC 1 cut(s) 524
PdmI GAANNNNTTC 1 cut(s) 574
PfeI GAWTC 1 cut(s) 165
PkrI GCNGC 9 cut(s) 106, 109, 117, 355, 358, 361, 451, 778, 781
Ple19I CGATCG 1 cut(s) 39
PleI GAGTC 2 cut(s) 913, 958
PpsI GAGTC 2 cut(s) 913, 958
Ppu21I YACGTR 1 cut(s) 440
Psp6I CCWGG 6 cut(s) 159, 496, 511, 538, 556, 847
PspFI CCCAGC 1 cut(s) 932
PspGI CCWGG 6 cut(s) 159, 496, 511, 538, 556, 847
PspN4I GGNNCC 5 cut(s) 184, 256, 419, 589, 898
PspPI GGNCC 2 cut(s) 255, 485
PstI CTGCAG 1 cut(s) 766
PsuI RGATCY 3 cut(s) 391, 417, 715
PvuI CGATCG 1 cut(s) 39
RsaI GTAC 4 cut(s) 438, 589, 679, 898
RsaNI GTAC 4 cut(s) 437, 588, 678, 897
RseI CAYNNNNRTG 1 cut(s) 221
SalI GTCGAC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 9 cut(s) 105, 108, 116, 354, 357, 360, 450, 777, 780
Sau3AI GATC 8 cut(s) 27, 36, 330, 391, 417, 581, 664, 715
Sau96I GGNCC 2 cut(s) 255, 485
SchI GAGTC 2 cut(s) 913, 959
ScrFI CCNGG 7 cut(s) 122, 161, 498, 513, 540, 558, 849
SexAI ACCWGGT 1 cut(s) 556
SfaNI GCATC 3 cut(s) 50, 414, 763
SfcI CTRYAG 1 cut(s) 762
SinI GGWCC 2 cut(s) 255, 485
SmiMI CAYNNNNRTG 1 cut(s) 221
SpeI ACTAGT 1 cut(s) 1003
SspMI CTAG 2 cut(s) 1004, 1012
StyD4I CCNGG 7 cut(s) 120, 159, 496, 511, 538, 556, 847
StyI CCWWGG 1 cut(s) 631
TaaI ACNGT 2 cut(s) 328, 943
TaiI ACGT 3 cut(s) 71, 80, 442
TaqI TCGA 4 cut(s) 35, 135, 207, 580
TaqII GACCGA 1 cut(s) 272
TauI GCSGC 6 cut(s) 107, 110, 118, 359, 779, 782
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 3 cut(s) 294, 415, 948
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 3 cut(s) 353, 359, 449
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 3 cut(s) 45, 539, 615
TspGWI ACGGA 1 cut(s) 4
TspRI CASTG 3 cut(s) 294, 415, 948
VpaK11BI GGWCC 2 cut(s) 255, 485
XapI RAATTY 1 cut(s) 704
XmiI GTMKAC 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 574
XspI CTAG 2 cut(s) 1004, 1012
ZraI GACGTC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.