Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009184

Physical Location & Seq

Genomic Coordinates Forward (+)

68529937 .. 68533187

Gene Structure 3251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005558

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGGTCGCCAATCCCTAGCTAAGCTGATCGGTTCGATCGCATCACGCAAGCCATTATCATCTCCGTCAACGTCAATAATTCAGCGCCGTCACTACGCAGCGGCTCCGCCGCCGCCGCCGGCTGTCTTTGTCGACAAAAACACTCGCGTCATTTGCCAGGGCATTACCGGCAAGAATGGCACTTTCCACTGCGAACAAGCCATCGAATATGGCACCAAAATGGTGGGTGGTGTTACTCCAAAGAAGGGCGGGACCGAGCATTTGGGACTTCCAGTCTTCAATTCAGTTGCAGAAGCAAAGGCTGAAACAAAGGCTAATGCTTCAGTAATCTATGTTCCTCCACCATTTGCTGCCGCTGCAATTATGGAAGCAATGGAAGCTGAGCTGGATCTCGTTGTGTGCATCACTGAGGGTATCCCACAACATGATATGGTACGTGTGAAGGCTGCTCTTAACAGCCAATCTAAAACGCGGCTCATTGGACCAAATTGCCCTGGAATTATCAAGCCTGGTGAATGCAAAATTGGAATTATGCCAGGCTACATTCATAAACCTGGTCGTGTGGGAATTGTTTCTCGATCTGGTACCTTGACCTATGAAGCGGTTTTCCAAACAACTGCTGTTGGCCTTGGACAATCCACTTGTGTTGGTATTGGGGGTGATCCTTTTAATGGTACAAACTTTGTTGATTGCATGGAAAAATTCTTGGCAGATCCTCAAACAGAAGGTATCGTTCTTATAGGAGAGATTGGTGGGACTGCAGAAGAGGATGCCGCTGCATTGATAAAGGAAAGTGGAACTGAGAAGCCAATTGTTGCATTTATTGCTGGACTAACTGCTCCCCCTGGTCGTCGTATGGGTCATGCTGGAGCTATTGTATCGGGAGGAAAGGGAACAGCGCAAGATAAAATCAAGACGCTTAGGGAAGCTGGGGTTACAGTGGTGGAGTCTCCTGCAAAAATTGGGGTTGCCATGCTTGAAGTGTTCAAGCAGAGGGGACTAGTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004774 GO:0004775 GO:0004776 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006104 GO:0006105 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0010035 GO:0010038 GO:0015980 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017144 GO:0019637 GO:0019693 GO:0019752 GO:0030312 GO:0031974 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046483 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0071944 GO:0072350 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00640 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00640 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

CoA_binding Ligase_CoA

Protein Analysis

337

Amino Acids

34.97

Weight (kDa)

8.89

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoA_binding	PF02629	45 - 138	4.4e-33	CoA binding domain
Succ_CoA_lig	PF13607	185 - 319	8.3e-11	Succinyl-CoA ligase like flavodoxin domain
Ligase_CoA	PF00549	191 - 312	3.1e-30	CoA-ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08300 AT5G23250 AT5G23250 AT5G23250
fragaria_vesca	FvH4_5g18391
malus_domestica	MD06G1239800.v1.1 MD14G1245700.v1.1
prunus_persica	Prupe.5G243700_v2.0.a1 Prupe.5G243700_v2.0.a1
pyrus_communis	pycom06g21530 pycom14g20660
rosa_chinensis	RchiOBHm_Chr7g0177081
rosa_laevigata	RLG00000005558
rosa_multiflora	Rmu_sc0005310.1_g000024 Rmu_sc0005310.1_g000025 Rmu_sc0005912.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276110
rosa_rugosa	Rorug06G0403600
rosa_samantha	Rh7AG003000 Rh7CG002600 Rh7DG003100
rosa_wichuraiana	Rw7G000250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	584
AccB1I	GGYRCC	2 cut(s)	212, 584
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	2 cut(s)	147, 472
AclWI	GGATC	3 cut(s)	396, 656, 707
AcsI	RAATTY	1 cut(s)	701
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	3 cut(s)	435, 586, 676
AfiI	CCNNNNNNNGG	2 cut(s)	245, 671
AflIII	ACRYGT	1 cut(s)	436
AgsI	TTSAA	3 cut(s)	280, 980, 988
AhdI	GACNNNNNGTC	1 cut(s)	272
AhlI	ACTAGT	1 cut(s)	1000
AjnI	CCWGG	6 cut(s)	156, 493, 508, 535, 553, 844
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AluBI	AGCT	6 cut(s)	20, 25, 380, 385, 872, 929
AluI	AGCT	6 cut(s)	20, 25, 380, 385, 872, 929
Alw26I	GTCTC	1 cut(s)	954
AlwI	GGATC	3 cut(s)	396, 656, 707
AoxI	GGCC	1 cut(s)	625
ApeKI	GCWGC	5 cut(s)	98, 350, 356, 446, 776
ApoI	RAATTY	1 cut(s)	701
ArsI	GACNNNNNNTTYG	2 cut(s)	244, 276
Asp700I	GAANNNNTTC	1 cut(s)	571
Asp718I	GGTACC	1 cut(s)	584
AspLEI	GCGC	2 cut(s)	87, 901
AspS9I	GGNCC	2 cut(s)	252, 482
AsuHPI	GGTGA	2 cut(s)	524, 671
AvaII	GGWCC	2 cut(s)	252, 482
BanI	GGYRCC	2 cut(s)	212, 584
BbsI	GAAGAC	1 cut(s)	268
BbvI	GCAGC	5 cut(s)	110, 337, 343, 433, 763
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	6 cut(s)	158, 495, 510, 537, 555, 846
BciVI	GTATCC	1 cut(s)	425
BcoDI	GTCTC	1 cut(s)	954
BcuI	ACTAGT	1 cut(s)	1000
BfaI	CTAG	3 cut(s)	17, 1001, 1009
BfmI	CTRYAG	1 cut(s)	759
BfoI	RGCGCY	1 cut(s)	88
BfuI	GTATCC	1 cut(s)	425
BlpI	GCTNAGC	2 cut(s)	21, 381
Bme1390I	CCNGG	6 cut(s)	158, 495, 510, 537, 555, 846
Bme18I	GGWCC	2 cut(s)	252, 482
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	252, 482
BmiI	GGNNCC	4 cut(s)	105, 214, 253, 586
BmrFI	CCNGG	6 cut(s)	158, 495, 510, 537, 555, 846
BmsI	GCATC	3 cut(s)	50, 411, 760
BpiI	GAAGAC	1 cut(s)	268
BpmI	CTGGAG	1 cut(s)	888
Bpu10I	CCTNAGC	1 cut(s)	920
Bpu1102I	GCTNAGC	2 cut(s)	21, 381
BsaAI	YACGTR	1 cut(s)	437
BsaJI	CCNNGG	4 cut(s)	157, 493, 628, 844
BsaXI	ACNNNNNCTCC	2 cut(s)	861, 891
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 671
Bse118I	RCCGGY	2 cut(s)	118, 167
Bse1I	ACTGG	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	378
BseBI	CCWGG	6 cut(s)	158, 495, 510, 537, 555, 846
BseDI	CCNNGG	4 cut(s)	157, 493, 628, 844
BseGI	GGATG	1 cut(s)	775
BseLI	CCNNNNNNNGG	2 cut(s)	245, 671
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	3 cut(s)	372, 399, 792
BseNI	ACTGG	1 cut(s)	272
BseXI	GCAGC	5 cut(s)	110, 337, 343, 433, 763
BseYI	CCCAGC	1 cut(s)	929
Bsh1236I	CGCG	2 cut(s)	147, 472
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	627
BshNI	GGYRCC	2 cut(s)	212, 584
BsiEI	CGRYCG	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	119, 168
BslFI	GGGAC	3 cut(s)	265, 279, 769
BslI	CCNNNNNNNGG	2 cut(s)	245, 671
BsmAI	GTCTC	1 cut(s)	954
BsmFI	GGGAC	3 cut(s)	265, 279, 769
BsmI	GAATGC	1 cut(s)	521
BsnI	GGCC	1 cut(s)	627
Bsp143I	GATC	6 cut(s)	27, 36, 388, 578, 661, 712
Bsp1720I	GCTNAGC	2 cut(s)	21, 381
BspANI	GGCC	1 cut(s)	627
BspCNI	CTCAG	3 cut(s)	373, 400, 793
BspFNI	CGCG	2 cut(s)	147, 472
BspLI	GGNNCC	4 cut(s)	105, 214, 253, 586
BspMAI	CTGCAG	1 cut(s)	763
BspPI	GGATC	3 cut(s)	396, 656, 707
BspT107I	GGYRCC	2 cut(s)	212, 584
BsrDI	GCAATG	1 cut(s)	378
BsrFI	RCCGGY	2 cut(s)	118, 167
BsrI	ACTGG	1 cut(s)	272
BssAI	RCCGGY	2 cut(s)	118, 167
BssECI	CCNNGG	4 cut(s)	157, 493, 628, 844
BssMI	GATC	6 cut(s)	27, 36, 388, 578, 661, 712
BssT1I	CCWWGG	1 cut(s)	628
Bst2UI	CCWGG	6 cut(s)	158, 495, 510, 537, 555, 846
Bst4CI	ACNGT	1 cut(s)	940
Bst6I	CTCTTC	1 cut(s)	759
BstAPI	GCANNNNNTGC	1 cut(s)	824
BstBAI	YACGTR	1 cut(s)	437
BstC8I	GCNNGC	2 cut(s)	50, 120
BstDEI	CTNAG	5 cut(s)	21, 381, 408, 801, 920
BstF5I	GGATG	1 cut(s)	775
BstFNI	CGCG	2 cut(s)	147, 472
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	2 cut(s)	87, 901
BstKTI	GATC	6 cut(s)	30, 39, 391, 581, 664, 715
BstMAI	GTCTC	1 cut(s)	954
BstMBI	GATC	6 cut(s)	27, 36, 388, 578, 661, 712
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	7 cut(s)	115, 153, 168, 177, 356, 377, 824
BstNI	CCWGG	6 cut(s)	158, 495, 510, 537, 555, 846
BstSCI	CCNGG	6 cut(s)	156, 493, 508, 535, 553, 844
BstSFI	CTRYAG	1 cut(s)	759
BstUI	CGCG	2 cut(s)	147, 472
BstV1I	GCAGC	5 cut(s)	110, 337, 343, 433, 763
BstV2I	GAAGAC	1 cut(s)	268
BstX2I	RGATCY	2 cut(s)	388, 712
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	2 cut(s)	388, 712
BsuI	GTATCC	1 cut(s)	425
BsuRI	GGCC	1 cut(s)	627
BtsCI	GGATG	1 cut(s)	775
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	3 cut(s)	187, 405, 945
Cac8I	GCNNGC	2 cut(s)	50, 120
CfoI	GCGC	2 cut(s)	87, 901
Cfr10I	RCCGGY	2 cut(s)	118, 167
Cfr13I	GGNCC	2 cut(s)	252, 482
CseI	GACGC	2 cut(s)	136, 925
CsiI	ACCWGGT	1 cut(s)	553
Csp6I	GTAC	3 cut(s)	434, 585, 675
CspCI	CAANNNNNGTGG	2 cut(s)	628, 663
CviAII	CATG	4 cut(s)	425, 694, 863, 973
CviQI	GTAC	3 cut(s)	434, 585, 675
DdeI	CTNAG	5 cut(s)	21, 381, 408, 801, 920
DpnI	GATC	6 cut(s)	29, 38, 390, 580, 663, 714
DpnII	GATC	6 cut(s)	27, 36, 388, 578, 661, 712
DriI	GACNNNNNGTC	1 cut(s)	272
Eam1104I	CTCTTC	1 cut(s)	759
Eam1105I	GACNNNNNGTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	759
EciI	GGCGGA	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	628
Eco47I	GGWCC	2 cut(s)	252, 482
Eco57I	CTGAAG	1 cut(s)	306
EcoRII	CCWGG	6 cut(s)	156, 493, 508, 535, 553, 844
EcoT14I	CCWWGG	1 cut(s)	628
ErhI	CCWWGG	1 cut(s)	628
FaeI	CATG	4 cut(s)	428, 697, 866, 976
FaqI	GGGAC	3 cut(s)	265, 279, 769
FatI	CATG	4 cut(s)	424, 693, 862, 972
FauI	CCCGC	1 cut(s)	242
FblI	GTMKAC	1 cut(s)	132
FokI	GGATG	1 cut(s)	782
FspBI	CTAG	3 cut(s)	17, 1001, 1009
GlaI	GCGC	2 cut(s)	86, 900
GsaI	CCCAGC	1 cut(s)	933
GsuI	CTGGAG	1 cut(s)	888
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	627
HapII	CCGG	2 cut(s)	119, 168
HgaI	GACGC	2 cut(s)	136, 925
HhaI	GCGC	2 cut(s)	87, 901
Hin1II	CATG	4 cut(s)	428, 697, 866, 976
Hin6I	GCGC	2 cut(s)	85, 899
HinP1I	GCGC	2 cut(s)	85, 899
HincII	GTYRAC	2 cut(s)	69, 133
HindII	GTYRAC	2 cut(s)	69, 133
HinfI	GANTC	1 cut(s)	947
HpaII	CCGG	2 cut(s)	119, 168
HphI	GGTGA	2 cut(s)	524, 671
Hpy166II	GTNNAC	3 cut(s)	69, 133, 1006
Hpy188III	TCNNGA	3 cut(s)	576, 882, 913
Hpy8I	GTNNAC	3 cut(s)	69, 133, 1006
Hpy99I	CGWCG	1 cut(s)	855
HpyAV	CCTTC	3 cut(s)	238, 436, 719
HpyCH4III	ACNGT	1 cut(s)	940
HpyCH4IV	ACGT	2 cut(s)	71, 436
HpyCH4V	TGCA	9 cut(s)	290, 359, 402, 519, 693, 761, 779, 818, 956
HpyF10VI	GCNNNNNNNGC	7 cut(s)	115, 153, 168, 177, 356, 377, 824
HpyF3I	CTNAG	5 cut(s)	21, 381, 408, 801, 920
HpySE526I	ACGT	2 cut(s)	71, 436
Hsp92II	CATG	4 cut(s)	428, 697, 866, 976
HspAI	GCGC	2 cut(s)	85, 899
KpnI	GGTACC	1 cut(s)	588
KroI	GCCGGC	1 cut(s)	118
KroNI	GCCGGC	1 cut(s)	120
Kzo9I	GATC	6 cut(s)	27, 36, 388, 578, 661, 712
LmnI	GCTCC	3 cut(s)	109, 844, 869
Lsp1109I	GCAGC	5 cut(s)	110, 337, 343, 433, 763
LweI	GCATC	3 cut(s)	50, 411, 760
MabI	ACCWGGT	1 cut(s)	553
MaeI	CTAG	3 cut(s)	17, 1001, 1009
MaeII	ACGT	2 cut(s)	71, 436
MaeIII	GTNAC	3 cut(s)	89, 232, 934
MalI	GATC	6 cut(s)	29, 38, 390, 580, 663, 714
MboI	GATC	6 cut(s)	27, 36, 388, 578, 661, 712
MboII	GAAGA	2 cut(s)	268, 776
MfeI	CAATTG	1 cut(s)	810
MflI	RGATCY	2 cut(s)	388, 712
MlyI	GAGTC	1 cut(s)	956
MnlI	CCTC	6 cut(s)	348, 403, 726, 760, 878, 987
MroNI	GCCGGC	1 cut(s)	118
MroXI	GAANNNNTTC	1 cut(s)	571
MseI	TTAA	2 cut(s)	453, 669
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	3 cut(s)	101, 356, 776
MspI	CCGG	2 cut(s)	119, 168
MspR9I	CCNGG	6 cut(s)	158, 495, 510, 537, 555, 846
MunI	CAATTG	1 cut(s)	810
Mva1269I	GAATGC	1 cut(s)	521
MvaI	CCWGG	6 cut(s)	158, 495, 510, 537, 555, 846
MvnI	CGCG	2 cut(s)	147, 472
MwoI	GCNNNNNNNGC	7 cut(s)	115, 153, 168, 177, 356, 377, 824
NaeI	GCCGGC	1 cut(s)	120
NdeII	GATC	6 cut(s)	27, 36, 388, 578, 661, 712
NgoMIV	GCCGGC	1 cut(s)	118
NlaIII	CATG	4 cut(s)	428, 697, 866, 976
NlaIV	GGNNCC	4 cut(s)	105, 214, 253, 586
NmuCI	GTSAC	1 cut(s)	89
PctI	GAATGC	1 cut(s)	521
PdiI	GCCGGC	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	571
Ple19I	CGATCG	1 cut(s)	39
PleI	GAGTC	1 cut(s)	955
PpsI	GAGTC	1 cut(s)	955
Ppu21I	YACGTR	1 cut(s)	437
Psp6I	CCWGG	6 cut(s)	156, 493, 508, 535, 553, 844
PspFI	CCCAGC	1 cut(s)	929
PspGI	CCWGG	6 cut(s)	156, 493, 508, 535, 553, 844
PspN4I	GGNNCC	4 cut(s)	105, 214, 253, 586
PspPI	GGNCC	2 cut(s)	252, 482
PsrI	GAACNNNNNNTAC	2 cut(s)	318, 350
PstI	CTGCAG	1 cut(s)	763
PsuI	RGATCY	2 cut(s)	388, 712
PvuI	CGATCG	1 cut(s)	39
RsaI	GTAC	3 cut(s)	435, 586, 676
RsaNI	GTAC	3 cut(s)	434, 585, 675
RseI	CAYNNNNRTG	1 cut(s)	218
SalI	GTCGAC	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	453, 669
Sau3AI	GATC	6 cut(s)	27, 36, 388, 578, 661, 712
Sau96I	GGNCC	2 cut(s)	252, 482
SchI	GAGTC	1 cut(s)	956
ScrFI	CCNGG	6 cut(s)	158, 495, 510, 537, 555, 846
SexAI	ACCWGGT	1 cut(s)	553
SfaNI	GCATC	3 cut(s)	50, 411, 760
SfcI	CTRYAG	1 cut(s)	759
SinI	GGWCC	2 cut(s)	252, 482
SmiMI	CAYNNNNRTG	1 cut(s)	218
SpeI	ACTAGT	1 cut(s)	1000
SspMI	CTAG	3 cut(s)	17, 1001, 1009
StyD4I	CCNGG	6 cut(s)	156, 493, 508, 535, 553, 844
StyI	CCWWGG	1 cut(s)	628
TaaI	ACNGT	1 cut(s)	940
TaiI	ACGT	2 cut(s)	74, 439
TaqI	TCGA	4 cut(s)	35, 132, 204, 577
TaqII	GACCGA	1 cut(s)	269
TauI	GCSGC	7 cut(s)	104, 112, 115, 118, 356, 475, 776
Tru1I	TTAA	2 cut(s)	453, 669
Tru9I	TTAA	2 cut(s)	453, 669
TscAI	CASTG	3 cut(s)	194, 412, 945
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	5 cut(s)	98, 350, 356, 446, 776
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	2 cut(s)	536, 612
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	3 cut(s)	194, 412, 945
VpaK11BI	GGWCC	2 cut(s)	252, 482
XapI	RAATTY	1 cut(s)	701
XmiI	GTMKAC	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	571
XspI	CTAG	3 cut(s)	17, 1001, 1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.