Rroxscaffold_3G00276110

Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate- level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
67378322 .. 67381680
3359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00276110.1

Sequence Viewer

Length: 1128 bp
ATGGGTCGCCAATCCCTAGCTAAGCTGTTCGGTTCGATCGCATCACGCAAGCCATCATCATCTCCGTCAACGTCAATAATTCAGCGCCGTCACTACGCAGCCGCTCCGCCGCCGCCGGCTGTCTTTGTCGACAAAAACACTCGCGTCATTTGCCAGGGAATTACCGGAAAGAATGGCACTTTCCACTGCGAACAAGCCATCGAATATGGCACTAAAATGGTGGGTGGTGTTACTCCAAAGAAGGGCGGGACTGAGCACTTGGGACTTCCAGTCTTCAATTCAGTTGCAGAAGCAAAGGCTGAAACAAAGGCTAATGCTTCAGTAATCTATGTTCCTCCACCATTTGCTGCCGCTGCAATTATGGAAGCAATGGAAGCTGAGCTGGATCTCGTTGTGTGCATCACTGAGGGTATCCCACAACATGATATGGTACGTGTGAAGGCTGCTCTTAACAGCCAATCTAAAACGCGGCTCATTGGACCAAATTGCCCTGGAATTATCAAGCCTGGTGAATGCAAAATTGGAATTATGCCAGGCTACATTCATAAACCTGGTCGTGTGGGAATTGTTTCTCGATCTGGTACCTTGACCTATGAAGCGGTTTTCCAAACAACTGCTGTTGGCCTTGGACAATCCACTTGTGTTGGTATTGGGGGGATCCTTTTAATGGTACAAACTTTGTTGATTGCATGGAAAAATTCTTGGCAGATCCTCAAACAGAAGTGTTTCTACTTTGAGCTGCTGTCTCCCAACACTGTTGAGCTTCATGATAAGCTTCTAAGTACTCACCAATTAATTCTGCATATGGATGTGCATTCTTTGTATGATAATGCCAAAACATTTCGTATCGTTCTTATAGGAGAGATTGGTGGGACTGCAGAAGAGGATGCCGCTGCATTGATAAAGGAAAGTGGAACTGAGAAGCCAATTGTTGCATTTATTGCTGGACTAACTGCTCCCCCTGGTCGTCGTATGGGTCATGCTGGAGCTATTGTATCGGGAGGAAAGGGTACAGCGCAAGATAAAATCAAGACGCTTAGGGAAGCTGGGGTTACAGTGGTGGAGTCTCCTGCAAAAATTGGGGTTGCCATGCTTGAAGTGTTCAAGCAGAGGGGACTAGTGAACTAG

Protein Analysis

375

Amino Acids

39.84

Weight (kDa)

9.29

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CoA_binding PF02629 44 - 137 5.4e-33 CoA binding domain
Ligase_CoA PF00549 190 - 351 2.5e-16 CoA-ligase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 581
AccB1I GGYRCC 1 cut(s) 581
AccBSI CCGCTC 1 cut(s) 104
AccI GTMKAC 1 cut(s) 129
AccII CGCG 2 cut(s) 144, 469
AciI CCGC 9 cut(s) 102, 107, 110, 113, 246, 351, 469, 599, 891
AclWI GGATC 4 cut(s) 393, 652, 665, 703
AcsI RAATTY 1 cut(s) 697
AcuI CTGAAG 1 cut(s) 303
AfaI GTAC 5 cut(s) 432, 583, 672, 784, 1012
AfiI CCNNNNNNNGG 2 cut(s) 242, 667
AflIII ACRYGT 1 cut(s) 433
AgsI TTSAA 3 cut(s) 277, 1097, 1105
AhdI GACNNNNNGTC 1 cut(s) 269
AhlI ACTAGT 1 cut(s) 1117
AjnI CCWGG 6 cut(s) 153, 490, 505, 532, 550, 961
AjuI GAANNNNNNNTTGG 2 cut(s) 504, 536
AluBI AGCT 9 cut(s) 20, 25, 377, 382, 739, 763, 775, 989, 1046
AluI AGCT 9 cut(s) 20, 25, 377, 382, 739, 763, 775, 989, 1046
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 2 cut(s) 750, 1071
AlwI GGATC 4 cut(s) 393, 652, 665, 703
AoxI GGCC 1 cut(s) 622
ApeKI GCWGC 6 cut(s) 98, 347, 353, 443, 739, 893
ApoI RAATTY 1 cut(s) 697
AseI ATTAAT 1 cut(s) 794
Asp700I GAANNNNTTC 2 cut(s) 568, 725
Asp718I GGTACC 1 cut(s) 581
AspLEI GCGC 2 cut(s) 87, 1018
AspS9I GGNCC 1 cut(s) 479
AsuHPI GGTGA 2 cut(s) 521, 779
AvaII GGWCC 1 cut(s) 479
BamHI GGATCC 1 cut(s) 657
BanI GGYRCC 1 cut(s) 581
BarI GAAGNNNNNNTAC 2 cut(s) 713, 745
BbsI GAAGAC 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 6 cut(s) 110, 334, 340, 430, 726, 880
BccI CCATC 2 cut(s) 61, 206
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 6 cut(s) 155, 492, 507, 534, 552, 963
BciVI GTATCC 1 cut(s) 422
BcoDI GTCTC 2 cut(s) 750, 1071
BcuI ACTAGT 1 cut(s) 1117
BfaI CTAG 3 cut(s) 17, 1118, 1126
BfmI CTRYAG 1 cut(s) 876
BfoI RGCGCY 1 cut(s) 88
BfuI GTATCC 1 cut(s) 422
BlpI GCTNAGC 2 cut(s) 21, 378
BmcAI AGTACT 1 cut(s) 784
Bme1390I CCNGG 6 cut(s) 155, 492, 507, 534, 552, 963
Bme18I GGWCC 1 cut(s) 479
BmeRI GACNNNNNGTC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 2 cut(s) 583, 659
BmrFI CCNGG 6 cut(s) 155, 492, 507, 534, 552, 963
BmsI GCATC 3 cut(s) 50, 408, 877
BpiI GAAGAC 1 cut(s) 265
BpmI CTGGAG 1 cut(s) 1005
Bpu10I CCTNAGC 1 cut(s) 1037
Bpu1102I GCTNAGC 2 cut(s) 21, 378
BsaAI YACGTR 1 cut(s) 434
BsaJI CCNNGG 4 cut(s) 154, 490, 625, 961
BsaWI WCCGGW 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 978, 1008
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 667
Bse118I RCCGGY 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 269
Bse3DI GCAATG 1 cut(s) 375
BseBI CCWGG 6 cut(s) 155, 492, 507, 534, 552, 963
BseDI CCNNGG 4 cut(s) 154, 490, 625, 961
BseGI GGATG 2 cut(s) 814, 892
BseLI CCNNNNNNNGG 2 cut(s) 242, 667
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 4 cut(s) 243, 369, 396, 909
BseNI ACTGG 1 cut(s) 269
BseXI GCAGC 6 cut(s) 110, 334, 340, 430, 726, 880
BseYI CCCAGC 1 cut(s) 1046
Bsh1236I CGCG 2 cut(s) 144, 469
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 1 cut(s) 624
BshNI GGYRCC 1 cut(s) 581
BsiEI CGRYCG 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 2 cut(s) 116, 165
BslFI GGGAC 3 cut(s) 262, 276, 886
BslI CCNNNNNNNGG 2 cut(s) 242, 667
BsmAI GTCTC 2 cut(s) 750, 1071
BsmFI GGGAC 3 cut(s) 262, 276, 886
BsmI GAATGC 2 cut(s) 518, 814
BsnI GGCC 1 cut(s) 624
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 5 cut(s) 36, 385, 575, 657, 708
Bsp1720I GCTNAGC 2 cut(s) 21, 378
BspACI CCGC 9 cut(s) 102, 107, 110, 113, 246, 351, 469, 599, 891
BspANI GGCC 1 cut(s) 624
BspCNI CTCAG 4 cut(s) 244, 370, 397, 910
BspFNI CGCG 2 cut(s) 144, 469
BspHI TCATGA 1 cut(s) 766
BspLI GGNNCC 2 cut(s) 583, 659
BspMAI CTGCAG 1 cut(s) 880
BspPI GGATC 4 cut(s) 393, 652, 665, 703
BspT107I GGYRCC 1 cut(s) 581
BsrBI CCGCTC 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 375
BsrFI RCCGGY 1 cut(s) 115
BsrI ACTGG 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 115
BssECI CCNNGG 4 cut(s) 154, 490, 625, 961
BssMI GATC 5 cut(s) 36, 385, 575, 657, 708
BssT1I CCWWGG 1 cut(s) 625
Bst2UI CCWGG 6 cut(s) 155, 492, 507, 534, 552, 963
Bst4CI ACNGT 2 cut(s) 757, 1057
Bst6I CTCTTC 1 cut(s) 876
BstAPI GCANNNNNTGC 1 cut(s) 941
BstBAI YACGTR 1 cut(s) 434
BstC8I GCNNGC 2 cut(s) 50, 117
BstDEI CTNAG 7 cut(s) 21, 252, 378, 405, 779, 918, 1037
BstF5I GGATG 2 cut(s) 814, 892
BstFNI CGCG 2 cut(s) 144, 469
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 2 cut(s) 87, 1018
BstKTI GATC 5 cut(s) 39, 388, 578, 660, 711
BstMAI GTCTC 2 cut(s) 750, 1071
BstMBI GATC 5 cut(s) 36, 385, 575, 657, 708
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 4 cut(s) 150, 353, 374, 941
BstNI CCWGG 6 cut(s) 155, 492, 507, 534, 552, 963
BstSCI CCNGG 6 cut(s) 153, 490, 505, 532, 550, 961
BstSFI CTRYAG 1 cut(s) 876
BstUI CGCG 2 cut(s) 144, 469
BstV1I GCAGC 6 cut(s) 110, 334, 340, 430, 726, 880
BstV2I GAAGAC 1 cut(s) 265
BstX2I RGATCY 3 cut(s) 385, 657, 708
BstYI RGATCY 3 cut(s) 385, 657, 708
BsuI GTATCC 1 cut(s) 422
BsuRI GGCC 1 cut(s) 624
BtsCI GGATG 2 cut(s) 814, 892
BtsI GCAGTG 1 cut(s) 184
BtsIMutI CAGTG 4 cut(s) 184, 402, 753, 1062
Cac8I GCNNGC 2 cut(s) 50, 117
CciI TCATGA 1 cut(s) 766
CfoI GCGC 2 cut(s) 87, 1018
Cfr10I RCCGGY 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 479
CseI GACGC 2 cut(s) 133, 1042
CsiI ACCWGGT 1 cut(s) 550
Csp6I GTAC 5 cut(s) 431, 582, 671, 783, 1011
CspCI CAANNNNNGTGG 2 cut(s) 625, 660
CviAII CATG 5 cut(s) 422, 690, 767, 980, 1090
CviQI GTAC 5 cut(s) 431, 582, 671, 783, 1011
DdeI CTNAG 7 cut(s) 21, 252, 378, 405, 779, 918, 1037
DpnI GATC 5 cut(s) 38, 387, 577, 659, 710
DpnII GATC 5 cut(s) 36, 385, 575, 657, 708
DriI GACNNNNNGTC 1 cut(s) 269
Eam1104I CTCTTC 1 cut(s) 876
Eam1105I GACNNNNNGTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 876
EciI GGCGGA 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 625
Eco47I GGWCC 1 cut(s) 479
Eco57I CTGAAG 1 cut(s) 303
EcoRII CCWGG 6 cut(s) 153, 490, 505, 532, 550, 961
EcoT14I CCWWGG 1 cut(s) 625
ErhI CCWWGG 1 cut(s) 625
FaeI CATG 5 cut(s) 425, 693, 770, 983, 1093
FaqI GGGAC 3 cut(s) 262, 276, 886
FatI CATG 5 cut(s) 421, 689, 766, 979, 1089
FauI CCCGC 1 cut(s) 239
FauNDI CATATG 1 cut(s) 804
FblI GTMKAC 1 cut(s) 129
FokI GGATG 2 cut(s) 821, 899
FspBI CTAG 3 cut(s) 17, 1118, 1126
GlaI GCGC 2 cut(s) 86, 1017
GsaI CCCAGC 1 cut(s) 1050
GsuI CTGGAG 1 cut(s) 1005
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 1 cut(s) 624
HapII CCGG 2 cut(s) 116, 165
HgaI GACGC 2 cut(s) 133, 1042
HhaI GCGC 2 cut(s) 87, 1018
Hin1II CATG 5 cut(s) 425, 693, 770, 983, 1093
Hin6I GCGC 2 cut(s) 85, 1016
HinP1I GCGC 2 cut(s) 85, 1016
HincII GTYRAC 2 cut(s) 69, 130
HindII GTYRAC 2 cut(s) 69, 130
HindIII AAGCTT 1 cut(s) 773
HinfI GANTC 1 cut(s) 1064
HpaII CCGG 2 cut(s) 116, 165
HphI GGTGA 2 cut(s) 521, 779
Hpy166II GTNNAC 3 cut(s) 69, 130, 1123
Hpy188III TCNNGA 4 cut(s) 573, 767, 999, 1030
Hpy8I GTNNAC 3 cut(s) 69, 130, 1123
Hpy99I CGWCG 1 cut(s) 972
HpyAV CCTTC 2 cut(s) 235, 433
HpyCH4III ACNGT 2 cut(s) 757, 1057
HpyCH4IV ACGT 2 cut(s) 71, 433
HpyF10VI GCNNNNNNNGC 4 cut(s) 150, 353, 374, 941
HpyF3I CTNAG 7 cut(s) 21, 252, 378, 405, 779, 918, 1037
HpySE526I ACGT 2 cut(s) 71, 433
Hsp92II CATG 5 cut(s) 425, 693, 770, 983, 1093
HspAI GCGC 2 cut(s) 85, 1016
KpnI GGTACC 1 cut(s) 585
KroI GCCGGC 1 cut(s) 115
KroNI GCCGGC 1 cut(s) 117
Kzo9I GATC 5 cut(s) 36, 385, 575, 657, 708
LmnI GCTCC 3 cut(s) 109, 961, 986
Lsp1109I GCAGC 6 cut(s) 110, 334, 340, 430, 726, 880
LweI GCATC 3 cut(s) 50, 408, 877
MabI ACCWGGT 1 cut(s) 550
MaeI CTAG 3 cut(s) 17, 1118, 1126
MaeII ACGT 2 cut(s) 71, 433
MaeIII GTNAC 3 cut(s) 89, 229, 1051
MalI GATC 5 cut(s) 38, 387, 577, 659, 710
MbiI CCGCTC 1 cut(s) 104
MboI GATC 5 cut(s) 36, 385, 575, 657, 708
MboII GAAGA 2 cut(s) 265, 893
MfeI CAATTG 1 cut(s) 927
MflI RGATCY 3 cut(s) 385, 657, 708
MhlI GDGCHC 1 cut(s) 258
MlyI GAGTC 1 cut(s) 1073
MnlI CCTC 6 cut(s) 345, 400, 722, 877, 995, 1104
MroNI GCCGGC 1 cut(s) 115
MroXI GAANNNNTTC 2 cut(s) 568, 725
MseI TTAA 3 cut(s) 450, 665, 794
MslI CAYNNNNRTG 2 cut(s) 215, 807
MspA1I CMGCKG 2 cut(s) 353, 893
MspI CCGG 2 cut(s) 116, 165
MspR9I CCNGG 6 cut(s) 155, 492, 507, 534, 552, 963
MunI CAATTG 1 cut(s) 927
Mva1269I GAATGC 2 cut(s) 518, 814
MvaI CCWGG 6 cut(s) 155, 492, 507, 534, 552, 963
MvnI CGCG 2 cut(s) 144, 469
MwoI GCNNNNNNNGC 4 cut(s) 150, 353, 374, 941
NaeI GCCGGC 1 cut(s) 117
NdeI CATATG 1 cut(s) 804
NdeII GATC 5 cut(s) 36, 385, 575, 657, 708
NgoMIV GCCGGC 1 cut(s) 115
NlaIII CATG 5 cut(s) 425, 693, 770, 983, 1093
NlaIV GGNNCC 2 cut(s) 583, 659
NmuCI GTSAC 1 cut(s) 89
PagI TCATGA 1 cut(s) 766
PctI GAATGC 2 cut(s) 518, 814
PdiI GCCGGC 1 cut(s) 117
PdmI GAANNNNTTC 2 cut(s) 568, 725
Ple19I CGATCG 1 cut(s) 39
PleI GAGTC 1 cut(s) 1072
PpsI GAGTC 1 cut(s) 1072
Ppu21I YACGTR 1 cut(s) 434
PshBI ATTAAT 1 cut(s) 794
Psp6I CCWGG 6 cut(s) 153, 490, 505, 532, 550, 961
PspFI CCCAGC 1 cut(s) 1046
PspGI CCWGG 6 cut(s) 153, 490, 505, 532, 550, 961
PspN4I GGNNCC 2 cut(s) 583, 659
PspPI GGNCC 1 cut(s) 479
PsrI GAACNNNNNNTAC 2 cut(s) 315, 347
PstI CTGCAG 1 cut(s) 880
PsuI RGATCY 3 cut(s) 385, 657, 708
PvuI CGATCG 1 cut(s) 39
RsaI GTAC 5 cut(s) 432, 583, 672, 784, 1012
RsaNI GTAC 5 cut(s) 431, 582, 671, 783, 1011
RseI CAYNNNNRTG 2 cut(s) 215, 807
SalI GTCGAC 1 cut(s) 128
SaqAI TTAA 3 cut(s) 450, 665, 794
Sau3AI GATC 5 cut(s) 36, 385, 575, 657, 708
Sau96I GGNCC 1 cut(s) 479
ScaI AGTACT 1 cut(s) 784
SchI GAGTC 1 cut(s) 1073
ScrFI CCNGG 6 cut(s) 155, 492, 507, 534, 552, 963
SduI GDGCHC 1 cut(s) 258
SexAI ACCWGGT 1 cut(s) 550
SfaNI GCATC 3 cut(s) 50, 408, 877
SfcI CTRYAG 1 cut(s) 876
SinI GGWCC 1 cut(s) 479
SmiMI CAYNNNNRTG 2 cut(s) 215, 807
SpeI ACTAGT 1 cut(s) 1117
SsiI CCGC 9 cut(s) 102, 107, 110, 113, 246, 351, 469, 599, 891
SspMI CTAG 3 cut(s) 17, 1118, 1126
StyD4I CCNGG 6 cut(s) 153, 490, 505, 532, 550, 961
StyI CCWWGG 1 cut(s) 625
TaaI ACNGT 2 cut(s) 757, 1057
TaiI ACGT 2 cut(s) 74, 436
TaqI TCGA 4 cut(s) 35, 129, 201, 574
TatI WGTACW 1 cut(s) 782
TauI GCSGC 6 cut(s) 104, 112, 115, 353, 472, 893
Tru1I TTAA 3 cut(s) 450, 665, 794
Tru9I TTAA 3 cut(s) 450, 665, 794
TscAI CASTG 4 cut(s) 191, 409, 760, 1062
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 6 cut(s) 98, 347, 353, 443, 739, 893
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 3 cut(s) 533, 609, 755
TspGWI ACGGA 1 cut(s) 54
TspRI CASTG 4 cut(s) 191, 409, 760, 1062
VpaK11BI GGWCC 1 cut(s) 479
VspI ATTAAT 1 cut(s) 794
XapI RAATTY 1 cut(s) 697
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 2 cut(s) 568, 725
XspI CTAG 3 cut(s) 17, 1118, 1126
ZrmI AGTACT 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.