Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009184

Physical Location & Seq

Genomic Coordinates Reverse (-)

300859 .. 304574

Gene Structure 3716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG003100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGGTCGCCAATCCCTAGCTAAGCTGATCGGTTCGATCGCATCACGCAAGCCTTCATCATCTCCGTCAACGTCAATAATTCAGCGCCGTCACTACGCAGCCGCTCCGCCGCCGCCGCCGGCTGTCTTTGTCGACAAAAACACTCGCGTCATTTGCCAGGGCATTACCGGCAAGAATGGCACTTTCCACTGCGAACAAGCCATCGAATATGGCACTAAAATGGTGGGTGGTGTTACTCCAAAGAAGGGCGGAACTGAGCATTTGGGACTTCCAGTCTTCAATTCAGTTGCAGAAGCAAAGGCTGAAACAAAGGCTAATGCTTCAGTAATCTATGTTCCTCCACCATTTGCTGCCGCTGCAGTTATGGAAGCAATGGAAGCTGAGCTGGATCTCGTTGTGTGCATCACTGAGGGTATCCCACAACATGATATGGTACGTGTGAAGGCTGCTCTTAACAGCCAATCTAAAACGCGGCTCATTGGACCAAATTGCCCTGGAATTATCAAGCCTGGTGAATGCAAAATTGGAATTATGCCAGGCTACATTCATAAACCTGGTCGTGTGGGAATTGTTTCTCGATCTGGTACCTTGACCTATGAAGCGGTTTTCCAAACAACTGCTGTTGGCCTTGGACAATCCACTTGTGTTGGTATTGGGGGGGATCCTTTTAATGGTACAAACTTTGTTGATTGCATGGAAAAATTCTTGGCAGATCCTCAAACAGAAGGTATCGTTCTTATAGGAGAGATTGGTGGGACTGCAGAAGAGGATGCCGCTGCATTGATAAAGGTAATCATCACAATGCTTTTCAGCGTGCCATTGGCACCCTCTGTCTTCCTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004774 GO:0004775 GO:0004776 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006104 GO:0006105 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0010035 GO:0010038 GO:0015980 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017144 GO:0019637 GO:0019693 GO:0019752 GO:0030312 GO:0031974 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046483 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0071944 GO:0072350 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00640 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00640 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

CoA_binding Ligase_CoA

Protein Analysis

281

Amino Acids

29.4

Weight (kDa)

8.13

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoA_binding	PF02629	45 - 138	3.3e-33	CoA binding domain
Succ_CoA_lig	PF13607	185 - 249	3.4e-06	Succinyl-CoA ligase like flavodoxin domain
Ligase_CoA	PF00549	191 - 265	2.2e-19	CoA-ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08300 AT5G23250 AT5G23250 AT5G23250
fragaria_vesca	FvH4_5g18391
malus_domestica	MD06G1239800.v1.1 MD14G1245700.v1.1
prunus_persica	Prupe.5G243700_v2.0.a1 Prupe.5G243700_v2.0.a1
pyrus_communis	pycom06g21530 pycom14g20660
rosa_chinensis	RchiOBHm_Chr7g0177081
rosa_laevigata	RLG00000005558
rosa_multiflora	Rmu_sc0005310.1_g000024 Rmu_sc0005310.1_g000025 Rmu_sc0005912.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276110
rosa_rugosa	Rorug06G0403600
rosa_samantha	Rh7AG003000 Rh7CG002600 Rh7DG003100
rosa_wichuraiana	Rw7G000250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	584
AccB1I	GGYRCC	2 cut(s)	584, 823
AccBSI	CCGCTC	1 cut(s)	104
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	2 cut(s)	147, 472
AclWI	GGATC	4 cut(s)	396, 656, 669, 707
AcsI	RAATTY	1 cut(s)	701
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	3 cut(s)	435, 586, 676
AfiI	CCNNNNNNNGG	2 cut(s)	245, 671
AflIII	ACRYGT	1 cut(s)	436
AgsI	TTSAA	1 cut(s)	280
AhdI	GACNNNNNGTC	1 cut(s)	272
AjnI	CCWGG	6 cut(s)	156, 493, 508, 535, 553, 837
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AluBI	AGCT	4 cut(s)	20, 25, 380, 385
AluI	AGCT	4 cut(s)	20, 25, 380, 385
AlwI	GGATC	4 cut(s)	396, 656, 669, 707
AoxI	GGCC	1 cut(s)	625
ApeKI	GCWGC	5 cut(s)	98, 350, 356, 446, 776
ApoI	RAATTY	1 cut(s)	701
Asp700I	GAANNNNTTC	1 cut(s)	571
Asp718I	GGTACC	1 cut(s)	584
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	482
BamHI	GGATCC	1 cut(s)	661
BanI	GGYRCC	2 cut(s)	584, 823
BbsI	GAAGAC	2 cut(s)	268, 826
BbvI	GCAGC	5 cut(s)	110, 337, 343, 433, 763
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	6 cut(s)	158, 495, 510, 537, 555, 839
BciVI	GTATCC	1 cut(s)	425
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	2 cut(s)	357, 759
BfoI	RGCGCY	1 cut(s)	88
BfuI	GTATCC	1 cut(s)	425
BlpI	GCTNAGC	2 cut(s)	21, 381
Bme1390I	CCNGG	6 cut(s)	158, 495, 510, 537, 555, 839
Bme18I	GGWCC	1 cut(s)	482
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	3 cut(s)	586, 663, 825
BmrFI	CCNGG	6 cut(s)	158, 495, 510, 537, 555, 839
BmsI	GCATC	3 cut(s)	50, 411, 760
BpiI	GAAGAC	2 cut(s)	268, 826
Bpu1102I	GCTNAGC	2 cut(s)	21, 381
BsaAI	YACGTR	1 cut(s)	437
BsaJI	CCNNGG	3 cut(s)	157, 493, 628
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 671
Bse118I	RCCGGY	2 cut(s)	118, 167
Bse1I	ACTGG	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	378
BseBI	CCWGG	6 cut(s)	158, 495, 510, 537, 555, 839
BseDI	CCNNGG	3 cut(s)	157, 493, 628
BseGI	GGATG	1 cut(s)	775
BseLI	CCNNNNNNNGG	2 cut(s)	245, 671
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	3 cut(s)	246, 372, 399
BseNI	ACTGG	1 cut(s)	272
BseXI	GCAGC	5 cut(s)	110, 337, 343, 433, 763
Bsh1236I	CGCG	2 cut(s)	147, 472
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	627
BshNI	GGYRCC	2 cut(s)	584, 823
BsiEI	CGRYCG	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	119, 168
BslFI	GGGAC	2 cut(s)	279, 769
BslI	CCNNNNNNNGG	2 cut(s)	245, 671
BsmFI	GGGAC	2 cut(s)	279, 769
BsmI	GAATGC	1 cut(s)	521
BsnI	GGCC	1 cut(s)	627
Bsp143I	GATC	6 cut(s)	27, 36, 388, 578, 661, 712
Bsp1720I	GCTNAGC	2 cut(s)	21, 381
BspANI	GGCC	1 cut(s)	627
BspCNI	CTCAG	3 cut(s)	247, 373, 400
BspFNI	CGCG	2 cut(s)	147, 472
BspLI	GGNNCC	3 cut(s)	586, 663, 825
BspMAI	CTGCAG	2 cut(s)	361, 763
BspPI	GGATC	4 cut(s)	396, 656, 669, 707
BspT107I	GGYRCC	2 cut(s)	584, 823
BsrBI	CCGCTC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	378
BsrFI	RCCGGY	2 cut(s)	118, 167
BsrI	ACTGG	1 cut(s)	272
BssAI	RCCGGY	2 cut(s)	118, 167
BssECI	CCNNGG	3 cut(s)	157, 493, 628
BssMI	GATC	6 cut(s)	27, 36, 388, 578, 661, 712
BssT1I	CCWWGG	1 cut(s)	628
Bst2UI	CCWGG	6 cut(s)	158, 495, 510, 537, 555, 839
Bst6I	CTCTTC	1 cut(s)	759
BstBAI	YACGTR	1 cut(s)	437
BstC8I	GCNNGC	3 cut(s)	50, 120, 815
BstDEI	CTNAG	4 cut(s)	21, 255, 381, 408
BstF5I	GGATG	1 cut(s)	775
BstFNI	CGCG	2 cut(s)	147, 472
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	6 cut(s)	30, 39, 391, 581, 664, 715
BstMBI	GATC	6 cut(s)	27, 36, 388, 578, 661, 712
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	6 cut(s)	115, 153, 168, 177, 356, 377
BstNI	CCWGG	6 cut(s)	158, 495, 510, 537, 555, 839
BstSCI	CCNGG	6 cut(s)	156, 493, 508, 535, 553, 837
BstSFI	CTRYAG	2 cut(s)	357, 759
BstUI	CGCG	2 cut(s)	147, 472
BstV1I	GCAGC	5 cut(s)	110, 337, 343, 433, 763
BstV2I	GAAGAC	2 cut(s)	268, 826
BstX2I	RGATCY	3 cut(s)	388, 661, 712
BstYI	RGATCY	3 cut(s)	388, 661, 712
BsuI	GTATCC	1 cut(s)	425
BsuRI	GGCC	1 cut(s)	627
BtsCI	GGATG	1 cut(s)	775
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	2 cut(s)	187, 405
Cac8I	GCNNGC	3 cut(s)	50, 120, 815
CfoI	GCGC	1 cut(s)	87
Cfr10I	RCCGGY	2 cut(s)	118, 167
Cfr13I	GGNCC	1 cut(s)	482
CseI	GACGC	1 cut(s)	136
CsiI	ACCWGGT	1 cut(s)	553
Csp6I	GTAC	3 cut(s)	434, 585, 675
CspCI	CAANNNNNGTGG	2 cut(s)	628, 663
CviAII	CATG	2 cut(s)	425, 694
CviQI	GTAC	3 cut(s)	434, 585, 675
DdeI	CTNAG	4 cut(s)	21, 255, 381, 408
DpnI	GATC	6 cut(s)	29, 38, 390, 580, 663, 714
DpnII	GATC	6 cut(s)	27, 36, 388, 578, 661, 712
DriI	GACNNNNNGTC	1 cut(s)	272
Eam1104I	CTCTTC	1 cut(s)	759
Eam1105I	GACNNNNNGTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	759
EciI	GGCGGA	2 cut(s)	96, 264
Eco130I	CCWWGG	1 cut(s)	628
Eco47I	GGWCC	1 cut(s)	482
Eco57I	CTGAAG	1 cut(s)	306
EcoRII	CCWGG	6 cut(s)	156, 493, 508, 535, 553, 837
EcoT14I	CCWWGG	1 cut(s)	628
ErhI	CCWWGG	1 cut(s)	628
FaeI	CATG	2 cut(s)	428, 697
FaqI	GGGAC	2 cut(s)	279, 769
FatI	CATG	2 cut(s)	424, 693
FblI	GTMKAC	1 cut(s)	132
FokI	GGATG	1 cut(s)	782
FspBI	CTAG	1 cut(s)	17
GlaI	GCGC	1 cut(s)	86
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	627
HapII	CCGG	2 cut(s)	119, 168
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	428, 697
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HincII	GTYRAC	2 cut(s)	69, 133
HindII	GTYRAC	2 cut(s)	69, 133
HpaII	CCGG	2 cut(s)	119, 168
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	2 cut(s)	69, 133
Hpy188III	TCNNGA	1 cut(s)	576
Hpy8I	GTNNAC	2 cut(s)	69, 133
HpyAV	CCTTC	4 cut(s)	63, 238, 436, 719
HpyCH4IV	ACGT	2 cut(s)	71, 436
HpyCH4V	TGCA	7 cut(s)	290, 359, 402, 519, 693, 761, 779
HpyF10VI	GCNNNNNNNGC	6 cut(s)	115, 153, 168, 177, 356, 377
HpyF3I	CTNAG	4 cut(s)	21, 255, 381, 408
HpySE526I	ACGT	2 cut(s)	71, 436
Hsp92II	CATG	2 cut(s)	428, 697
HspAI	GCGC	1 cut(s)	85
KpnI	GGTACC	1 cut(s)	588
KroI	GCCGGC	1 cut(s)	118
KroNI	GCCGGC	1 cut(s)	120
Kzo9I	GATC	6 cut(s)	27, 36, 388, 578, 661, 712
LmnI	GCTCC	1 cut(s)	109
Lsp1109I	GCAGC	5 cut(s)	110, 337, 343, 433, 763
LweI	GCATC	3 cut(s)	50, 411, 760
MabI	ACCWGGT	1 cut(s)	553
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	2 cut(s)	71, 436
MaeIII	GTNAC	2 cut(s)	89, 232
MalI	GATC	6 cut(s)	29, 38, 390, 580, 663, 714
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	6 cut(s)	27, 36, 388, 578, 661, 712
MboII	GAAGA	3 cut(s)	268, 776, 826
MflI	RGATCY	3 cut(s)	388, 661, 712
MluCI	AATT	8 cut(s)	78, 280, 487, 498, 522, 528, 567, 701
MnlI	CCTC	5 cut(s)	348, 403, 726, 760, 838
MroNI	GCCGGC	1 cut(s)	118
MroXI	GAANNNNTTC	1 cut(s)	571
MseI	TTAA	2 cut(s)	453, 669
MslI	CAYNNNNRTG	2 cut(s)	218, 800
MspA1I	CMGCKG	2 cut(s)	356, 776
MspI	CCGG	2 cut(s)	119, 168
MspR9I	CCNGG	6 cut(s)	158, 495, 510, 537, 555, 839
Mva1269I	GAATGC	1 cut(s)	521
MvaI	CCWGG	6 cut(s)	158, 495, 510, 537, 555, 839
MvnI	CGCG	2 cut(s)	147, 472
MwoI	GCNNNNNNNGC	6 cut(s)	115, 153, 168, 177, 356, 377
NaeI	GCCGGC	1 cut(s)	120
NdeII	GATC	6 cut(s)	27, 36, 388, 578, 661, 712
NgoMIV	GCCGGC	1 cut(s)	118
NlaIII	CATG	2 cut(s)	428, 697
NlaIV	GGNNCC	3 cut(s)	586, 663, 825
NmuCI	GTSAC	1 cut(s)	89
PctI	GAATGC	1 cut(s)	521
PdiI	GCCGGC	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	571
Ple19I	CGATCG	1 cut(s)	39
Ppu21I	YACGTR	1 cut(s)	437
Psp6I	CCWGG	6 cut(s)	156, 493, 508, 535, 553, 837
PspGI	CCWGG	6 cut(s)	156, 493, 508, 535, 553, 837
PspN4I	GGNNCC	3 cut(s)	586, 663, 825
PspPI	GGNCC	1 cut(s)	482
PsrI	GAACNNNNNNTAC	2 cut(s)	318, 350
PstI	CTGCAG	2 cut(s)	361, 763
PsuI	RGATCY	3 cut(s)	388, 661, 712
PvuI	CGATCG	1 cut(s)	39
RsaI	GTAC	3 cut(s)	435, 586, 676
RsaNI	GTAC	3 cut(s)	434, 585, 675
RseI	CAYNNNNRTG	2 cut(s)	218, 800
SalI	GTCGAC	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	453, 669
Sau3AI	GATC	6 cut(s)	27, 36, 388, 578, 661, 712
Sau96I	GGNCC	1 cut(s)	482
ScrFI	CCNGG	6 cut(s)	158, 495, 510, 537, 555, 839
SexAI	ACCWGGT	1 cut(s)	553
SfaNI	GCATC	3 cut(s)	50, 411, 760
SfcI	CTRYAG	2 cut(s)	357, 759
SinI	GGWCC	1 cut(s)	482
SmiMI	CAYNNNNRTG	2 cut(s)	218, 800
Sse9I	AATT	8 cut(s)	78, 280, 487, 498, 522, 528, 567, 701
SspMI	CTAG	1 cut(s)	17
StyD4I	CCNGG	6 cut(s)	156, 493, 508, 535, 553, 837
StyI	CCWWGG	1 cut(s)	628
TaiI	ACGT	2 cut(s)	74, 439
TaqI	TCGA	4 cut(s)	35, 132, 204, 577
TasI	AATT	8 cut(s)	78, 280, 487, 498, 522, 528, 567, 701
TauI	GCSGC	7 cut(s)	104, 112, 115, 118, 356, 475, 776
Tru1I	TTAA	2 cut(s)	453, 669
Tru9I	TTAA	2 cut(s)	453, 669
TscAI	CASTG	2 cut(s)	194, 412
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	5 cut(s)	98, 350, 356, 446, 776
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	3 cut(s)	45, 536, 612
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	2 cut(s)	194, 412
VpaK11BI	GGWCC	1 cut(s)	482
XapI	RAATTY	1 cut(s)	701
XmiI	GTMKAC	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	571
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.