Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009184

Physical Location & Seq

Genomic Coordinates Forward (+)

18280918 .. 18284722

Gene Structure 3805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G243700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGGTCGCCAAGCCGTAGCCAAGCTGATCGGTTCGATCGCATCACGCAAACCATCTCCGTCTCCGTCAACTTCTATTCTTCAGCGTCGACATTACTCCCCGGCTCCGTCACCGCCTCCGGCGGTGTTTGTCGACAAAAACACTCGCGTCATATGCCAAGGCATCACCGGCAAGAATGGCACTTTCCACACTGAACAAGCCATCGAATATGGCACCAAAATGGTGGGTGGTGTAACACCAAAGAAGGGTGGGACCGAGCATTTGGGACTCCCTGTTTTCAACTCAGTTGCAGAAGCAAAAGCTGAAACAAAGGCTAATGCCTCAGTCATTTATGTTCCCCCACCATTTGCTGCTGCTGCAATTATGGAGGCAATGGAAGCAGAGCTGGATCTTGTTGTGTGCATCACTGAGGGGATCCCGCAACATGATATGGTACGTGTGAAGGCTGCTCTTAACAGGCAATCTAAAACTCGGCTCATTGGACCAAACTGCCCTGGAATTATCAAGCCTGGTGAATGCAAAATTGGAATTATGCCTGGTTACATTCATAAACCTGGTCGTGTAGGAATTGTTTCTCGATCTGGTACCTTGACCTATGAAGCGGTTTTCCAAACAACTGCTGTTGGCCTTGGACAGTCCACCTGTGTTGGTATTGGAGGTGATCCTTTTAACGGTACAAACTTTGTTGATTGCATTGACAGATTCCTAGAAGATCCTCAGACAGAAGGTATCATTCTTATTGGAGAGATAGGTGGGACTGCAGAAGAGGATGCTGCTGCATTGATAAAGGAAAGTGGAACTGAGAAGCCAATTGTTGCTTTTATTGCTGGACTAACTGCTCCTCCTGGCCGTCGTATGGGTCATGCTGGAGCTATTGTGTCAGGGGGGAAGGGTACAGCACAAGACAAAATCAAGACCCTTAGGGAAGCTGGGGTGACAGTGGTGGAGTCTCCAGCAAAAATAGGGGTTGCAATGCTTGACGTCTTCAAACAGAGGGGCCTTGTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004774 GO:0004775 GO:0004776 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006104 GO:0006105 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0010035 GO:0010038 GO:0015980 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017144 GO:0019637 GO:0019693 GO:0019752 GO:0030312 GO:0031974 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046483 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0071944 GO:0072350 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00640 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00640 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

CoA_binding Ligase_CoA

Protein Analysis

337

Amino Acids

35.07

Weight (kDa)

8.96

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08300 AT5G23250 AT5G23250 AT5G23250
fragaria_vesca	FvH4_5g18391
malus_domestica	MD06G1239800.v1.1 MD14G1245700.v1.1
prunus_persica	Prupe.5G243700_v2.0.a1 Prupe.5G243700_v2.0.a1
pyrus_communis	pycom06g21530 pycom14g20660
rosa_chinensis	RchiOBHm_Chr7g0177081
rosa_laevigata	RLG00000005558
rosa_multiflora	Rmu_sc0005310.1_g000024 Rmu_sc0005310.1_g000025 Rmu_sc0005912.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276110
rosa_rugosa	Rorug06G0403600
rosa_samantha	Rh7AG003000 Rh7CG002600 Rh7DG003100
rosa_wichuraiana	Rw7G000250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	984
Acc65I	GGTACC	1 cut(s)	584
AccB1I	GGYRCC	2 cut(s)	212, 584
AccI	GTMKAC	2 cut(s)	88, 132
AccII	CGCG	1 cut(s)	147
AciI	CCGC	4 cut(s)	113, 122, 419, 602
AclWI	GGATC	5 cut(s)	396, 409, 422, 656, 707
AcoI	YGGCCR	1 cut(s)	847
AcuI	CTGAAG	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	981
AfaI	GTAC	4 cut(s)	435, 586, 676, 895
AfiI	CCNNNNNNNGG	3 cut(s)	245, 671, 856
AflIII	ACRYGT	1 cut(s)	436
AgsI	TTSAA	2 cut(s)	280, 988
AjnI	CCWGG	5 cut(s)	493, 508, 535, 553, 844
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AluBI	AGCT	5 cut(s)	25, 302, 385, 872, 929
AluI	AGCT	5 cut(s)	25, 302, 385, 872, 929
Alw26I	GTCTC	2 cut(s)	66, 954
AlwI	GGATC	5 cut(s)	396, 409, 422, 656, 707
AoxI	GGCC	3 cut(s)	625, 847, 997
ApeKI	GCWGC	6 cut(s)	350, 353, 356, 446, 773, 776
ArsI	GACNNNNNNTTYG	2 cut(s)	244, 276
Asp700I	GAANNNNTTC	1 cut(s)	571
Asp718I	GGTACC	1 cut(s)	584
AspS9I	GGNCC	3 cut(s)	252, 482, 997
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	5 cut(s)	102, 157, 524, 671, 946
AvaII	GGWCC	2 cut(s)	252, 482
AxyI	CCTNAGG	1 cut(s)	920
BamHI	GGATCC	1 cut(s)	414
BanI	GGYRCC	2 cut(s)	212, 584
BbsI	GAAGAC	1 cut(s)	976
BbvI	GCAGC	6 cut(s)	337, 340, 343, 433, 760, 763
BccI	CCATC	2 cut(s)	61, 209
BceAI	ACGGC	1 cut(s)	834
BciT130I	CCWGG	5 cut(s)	495, 510, 537, 555, 846
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	2 cut(s)	66, 954
BfaI	CTAG	1 cut(s)	707
BfmI	CTRYAG	1 cut(s)	759
BisI	GCNGC	6 cut(s)	351, 354, 357, 447, 774, 777
BlsI	GCNGC	6 cut(s)	352, 355, 358, 448, 775, 778
Bme1390I	CCNGG	6 cut(s)	101, 495, 510, 537, 555, 846
Bme18I	GGWCC	2 cut(s)	252, 482
BmgT120I	GGNCC	3 cut(s)	252, 482, 997
BmiI	GGNNCC	6 cut(s)	105, 214, 253, 416, 586, 998
BmrFI	CCNGG	6 cut(s)	101, 495, 510, 537, 555, 846
BmsI	GCATC	4 cut(s)	50, 171, 411, 760
BpiI	GAAGAC	1 cut(s)	976
BpmI	CTGGAG	2 cut(s)	888, 936
BpuMI	CCSGG	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	981
BsaJI	CCNNGG	4 cut(s)	99, 157, 493, 628
BsaXI	ACNNNNNCTCC	4 cut(s)	826, 856, 861, 891
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 671, 856
Bse118I	RCCGGY	1 cut(s)	167
Bse21I	CCTNAGG	1 cut(s)	920
Bse3DI	GCAATG	2 cut(s)	378, 978
BseBI	CCWGG	5 cut(s)	495, 510, 537, 555, 846
BseDI	CCNNGG	4 cut(s)	99, 157, 493, 628
BseGI	GGATG	1 cut(s)	775
BseLI	CCNNNNNNNGG	3 cut(s)	245, 671, 856
BseMI	GCAATG	2 cut(s)	378, 978
BseMII	CTCAG	5 cut(s)	297, 336, 399, 731, 792
BseRI	GAGGAG	1 cut(s)	831
BseXI	GCAGC	6 cut(s)	337, 340, 343, 433, 760, 763
BseYI	CCCAGC	1 cut(s)	929
Bsh1236I	CGCG	1 cut(s)	147
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	3 cut(s)	627, 849, 999
BshNI	GGYRCC	2 cut(s)	212, 584
BsiEI	CGRYCG	1 cut(s)	39
BsiSI	CCGG	3 cut(s)	101, 119, 168
BslFI	GGGAC	3 cut(s)	265, 279, 769
BslI	CCNNNNNNNGG	3 cut(s)	245, 671, 856
BsmAI	GTCTC	2 cut(s)	66, 954
BsmBI	CGTCTC	1 cut(s)	66
BsmFI	GGGAC	3 cut(s)	265, 279, 769
BsmI	GAATGC	1 cut(s)	521
BsnI	GGCC	3 cut(s)	627, 849, 999
Bsp143I	GATC	7 cut(s)	27, 36, 388, 414, 578, 661, 712
BspACI	CCGC	4 cut(s)	113, 122, 419, 602
BspANI	GGCC	3 cut(s)	627, 849, 999
BspCNI	CTCAG	5 cut(s)	296, 335, 400, 730, 793
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	6 cut(s)	105, 214, 253, 416, 586, 998
BspMAI	CTGCAG	1 cut(s)	763
BspPI	GGATC	5 cut(s)	396, 409, 422, 656, 707
BspT107I	GGYRCC	2 cut(s)	212, 584
BsrDI	GCAATG	2 cut(s)	378, 978
BsrFI	RCCGGY	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	4 cut(s)	99, 157, 493, 628
BssMI	GATC	7 cut(s)	27, 36, 388, 414, 578, 661, 712
BssNI	GRCGYC	1 cut(s)	981
BssT1I	CCWWGG	2 cut(s)	157, 628
Bst2UI	CCWGG	5 cut(s)	495, 510, 537, 555, 846
Bst4CI	ACNGT	3 cut(s)	636, 674, 940
Bst6I	CTCTTC	1 cut(s)	759
BstACI	GRCGYC	1 cut(s)	981
BstBAI	YACGTR	1 cut(s)	437
BstDEI	CTNAG	6 cut(s)	283, 322, 408, 717, 801, 920
BstF5I	GGATG	1 cut(s)	775
BstFNI	CGCG	1 cut(s)	147
BstKTI	GATC	7 cut(s)	30, 39, 391, 417, 581, 664, 715
BstMAI	GTCTC	2 cut(s)	66, 954
BstMBI	GATC	7 cut(s)	27, 36, 388, 414, 578, 661, 712
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	6 cut(s)	153, 168, 177, 356, 377, 824
BstNI	CCWGG	5 cut(s)	495, 510, 537, 555, 846
BstSCI	CCNGG	6 cut(s)	99, 493, 508, 535, 553, 844
BstSFI	CTRYAG	1 cut(s)	759
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	6 cut(s)	337, 340, 343, 433, 760, 763
BstV2I	GAAGAC	1 cut(s)	976
BstX2I	RGATCY	3 cut(s)	388, 414, 712
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	3 cut(s)	388, 414, 712
Bsu36I	CCTNAGG	1 cut(s)	920
BsuRI	GGCC	3 cut(s)	627, 849, 999
BtsCI	GGATG	1 cut(s)	775
BtsIMutI	CAGTG	3 cut(s)	189, 405, 945
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	3 cut(s)	252, 482, 997
CseI	GACGC	2 cut(s)	74, 136
CsiI	ACCWGGT	1 cut(s)	553
Csp6I	GTAC	4 cut(s)	434, 585, 675, 894
CspCI	CAANNNNNGTGG	2 cut(s)	628, 663
CviAII	CATG	2 cut(s)	425, 863
CviQI	GTAC	4 cut(s)	434, 585, 675, 894
DdeI	CTNAG	6 cut(s)	283, 322, 408, 717, 801, 920
DpnI	GATC	7 cut(s)	29, 38, 390, 416, 580, 663, 714
DpnII	GATC	7 cut(s)	27, 36, 388, 414, 578, 661, 712
EaeI	YGGCCR	1 cut(s)	847
Eam1104I	CTCTTC	1 cut(s)	759
EarI	CTCTTC	1 cut(s)	759
Eco130I	CCWWGG	2 cut(s)	157, 628
Eco47I	GGWCC	2 cut(s)	252, 482
Eco57I	CTGAAG	1 cut(s)	65
Eco81I	CCTNAGG	1 cut(s)	920
EcoO109I	RGGNCCY	1 cut(s)	997
EcoRII	CCWGG	5 cut(s)	493, 508, 535, 553, 844
EcoT14I	CCWWGG	2 cut(s)	157, 628
ErhI	CCWWGG	2 cut(s)	157, 628
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	2 cut(s)	428, 866
FaqI	GGGAC	3 cut(s)	265, 279, 769
FatI	CATG	2 cut(s)	424, 862
FauI	CCCGC	1 cut(s)	426
FauNDI	CATATG	1 cut(s)	152
FblI	GTMKAC	2 cut(s)	88, 132
Fnu4HI	GCNGC	6 cut(s)	351, 354, 357, 447, 774, 777
FokI	GGATG	1 cut(s)	782
Fsp4HI	GCNGC	6 cut(s)	351, 354, 357, 447, 774, 777
FspBI	CTAG	1 cut(s)	707
GluI	GCNGC	6 cut(s)	351, 354, 357, 447, 774, 777
GsaI	CCCAGC	1 cut(s)	933
GsuI	CTGGAG	2 cut(s)	888, 936
HaeIII	GGCC	3 cut(s)	627, 849, 999
HapII	CCGG	3 cut(s)	101, 119, 168
HgaI	GACGC	2 cut(s)	74, 136
Hin1I	GRCGYC	1 cut(s)	981
Hin1II	CATG	2 cut(s)	428, 866
HincII	GTYRAC	3 cut(s)	69, 89, 133
HindII	GTYRAC	3 cut(s)	69, 89, 133
HinfI	GANTC	3 cut(s)	267, 702, 947
HpaII	CCGG	3 cut(s)	101, 119, 168
HphI	GGTGA	5 cut(s)	102, 157, 524, 671, 946
Hpy166II	GTNNAC	4 cut(s)	69, 89, 133, 639
Hpy188I	TCNGA	1 cut(s)	720
Hpy188III	TCNNGA	2 cut(s)	576, 913
Hpy8I	GTNNAC	4 cut(s)	69, 89, 133, 639
Hpy99I	CGWCG	2 cut(s)	90, 855
HpyAV	CCTTC	4 cut(s)	238, 436, 719, 883
HpyCH4III	ACNGT	3 cut(s)	636, 674, 940
HpyCH4IV	ACGT	2 cut(s)	436, 981
HpyCH4V	TGCA	8 cut(s)	290, 359, 402, 519, 693, 761, 779, 971
HpyF10VI	GCNNNNNNNGC	6 cut(s)	153, 168, 177, 356, 377, 824
HpyF3I	CTNAG	6 cut(s)	283, 322, 408, 717, 801, 920
HpySE526I	ACGT	2 cut(s)	436, 981
Hsp92I	GRCGYC	1 cut(s)	981
Hsp92II	CATG	2 cut(s)	428, 866
KpnI	GGTACC	1 cut(s)	588
Kzo9I	GATC	7 cut(s)	27, 36, 388, 414, 578, 661, 712
LmnI	GCTCC	3 cut(s)	109, 844, 869
Lsp1109I	GCAGC	6 cut(s)	337, 340, 343, 433, 760, 763
LweI	GCATC	4 cut(s)	50, 171, 411, 760
MabI	ACCWGGT	1 cut(s)	553
MaeI	CTAG	1 cut(s)	707
MaeII	ACGT	2 cut(s)	436, 981
MaeIII	GTNAC	4 cut(s)	108, 232, 539, 934
MalI	GATC	7 cut(s)	29, 38, 390, 416, 580, 663, 714
MboI	GATC	7 cut(s)	27, 36, 388, 414, 578, 661, 712
MboII	GAAGA	4 cut(s)	71, 722, 776, 976
MfeI	CAATTG	1 cut(s)	810
MflI	RGATCY	3 cut(s)	388, 414, 712
MluCI	AATT	7 cut(s)	360, 498, 522, 528, 567, 810, 1006
MlyI	GAGTC	2 cut(s)	261, 956
MnlI	CCTC	9 cut(s)	126, 331, 361, 403, 650, 726, 760, 852, 987
MroXI	GAANNNNTTC	1 cut(s)	571
MseI	TTAA	2 cut(s)	453, 669
MslI	CAYNNNNRTG	1 cut(s)	218
MspI	CCGG	3 cut(s)	101, 119, 168
MspR9I	CCNGG	6 cut(s)	101, 495, 510, 537, 555, 846
MunI	CAATTG	1 cut(s)	810
Mva1269I	GAATGC	1 cut(s)	521
MvaI	CCWGG	5 cut(s)	495, 510, 537, 555, 846
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	6 cut(s)	153, 168, 177, 356, 377, 824
NciI	CCSGG	1 cut(s)	101
NdeI	CATATG	1 cut(s)	152
NdeII	GATC	7 cut(s)	27, 36, 388, 414, 578, 661, 712
NlaIII	CATG	2 cut(s)	428, 866
NlaIV	GGNNCC	6 cut(s)	105, 214, 253, 416, 586, 998
NmeAIII	GCCGAG	1 cut(s)	451
NmuCI	GTSAC	2 cut(s)	108, 934
PctI	GAATGC	1 cut(s)	521
PdmI	GAANNNNTTC	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	702
PkrI	GCNGC	6 cut(s)	352, 355, 358, 448, 775, 778
Ple19I	CGATCG	1 cut(s)	39
PleI	GAGTC	2 cut(s)	261, 955
PpsI	GAGTC	2 cut(s)	261, 955
Ppu21I	YACGTR	1 cut(s)	437
Psp6I	CCWGG	5 cut(s)	493, 508, 535, 553, 844
PspFI	CCCAGC	1 cut(s)	929
PspGI	CCWGG	5 cut(s)	493, 508, 535, 553, 844
PspN4I	GGNNCC	6 cut(s)	105, 214, 253, 416, 586, 998
PspPI	GGNCC	3 cut(s)	252, 482, 997
PstI	CTGCAG	1 cut(s)	763
PsuI	RGATCY	3 cut(s)	388, 414, 712
PvuI	CGATCG	1 cut(s)	39
RsaI	GTAC	4 cut(s)	435, 586, 676, 895
RsaNI	GTAC	4 cut(s)	434, 585, 675, 894
RseI	CAYNNNNRTG	1 cut(s)	218
SalI	GTCGAC	2 cut(s)	87, 131
SaqAI	TTAA	2 cut(s)	453, 669
SatI	GCNGC	6 cut(s)	351, 354, 357, 447, 774, 777
Sau3AI	GATC	7 cut(s)	27, 36, 388, 414, 578, 661, 712
Sau96I	GGNCC	3 cut(s)	252, 482, 997
SchI	GAGTC	2 cut(s)	261, 956
ScrFI	CCNGG	6 cut(s)	101, 495, 510, 537, 555, 846
SexAI	ACCWGGT	1 cut(s)	553
SfaNI	GCATC	4 cut(s)	50, 171, 411, 760
SfcI	CTRYAG	1 cut(s)	759
SinI	GGWCC	2 cut(s)	252, 482
SmiMI	CAYNNNNRTG	1 cut(s)	218
Sse9I	AATT	7 cut(s)	360, 498, 522, 528, 567, 810, 1006
SsiI	CCGC	4 cut(s)	113, 122, 419, 602
SspMI	CTAG	1 cut(s)	707
StyD4I	CCNGG	6 cut(s)	99, 493, 508, 535, 553, 844
StyI	CCWWGG	2 cut(s)	157, 628
TaaI	ACNGT	3 cut(s)	636, 674, 940
TaiI	ACGT	2 cut(s)	439, 984
TaqI	TCGA	5 cut(s)	35, 88, 132, 204, 577
TaqII	GACCGA	1 cut(s)	269
TasI	AATT	7 cut(s)	360, 498, 522, 528, 567, 810, 1006
TfiI	GAWTC	1 cut(s)	702
Tru1I	TTAA	2 cut(s)	453, 669
Tru9I	TTAA	2 cut(s)	453, 669
TscAI	CASTG	3 cut(s)	196, 412, 945
TseFI	GTSAC	2 cut(s)	108, 934
TseI	GCWGC	6 cut(s)	350, 353, 356, 446, 773, 776
Tsp45I	GTSAC	2 cut(s)	108, 934
TspDTI	ATGAA	2 cut(s)	536, 612
TspGWI	ACGGA	3 cut(s)	48, 54, 96
TspRI	CASTG	3 cut(s)	196, 412, 945
VpaK11BI	GGWCC	2 cut(s)	252, 482
XmiI	GTMKAC	2 cut(s)	88, 132
XmnI	GAANNNNTTC	1 cut(s)	571
XspI	CTAG	1 cut(s)	707
ZraI	GACGTC	1 cut(s)	982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.