Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009184

Physical Location & Seq

Genomic Coordinates Reverse (-)

194578 .. 198329

Gene Structure 3752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15773

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGTCGCCAATCCCTAGCTAAGCTGATCGGTTCGATCGCATCACGCAAGCCATCATCATCTCCGTCAACGTCAATAATTCAGCGCCGTCACTACGCAGCCGCTCCGCCGCCGCCGGCTGTCTTTGTCGACAAAAACACTCGCGTCATTTGCCAGGGCATTACCGGCAAGAATGGCACTTTCCACTGCGAACAAGCCATCGAATATGGCACTAAAATGGTGGGTGGTGTTACTCCAAAGAAGGGCGGAACTGAGCATTTGGGACTTCCAGTCTTCAATTCAGTTGCAGAAGCAAAGGCTGAAACAAAGGCTAATGCTTCGGTAATCTATGTTCCTCCACCATTTGCTGCCGCTGCAATTATGGAAGCAATGGAAGCTGAGCTGGATCTCGTTGTGTGCATCACTGAGGGTATCCCACAACATGATATGGTACGTGTGAAGGCTGCTCTTAACAGCCAATCTAAAACGCGGCTCATTGGACCAAATTGCCCTGGAATTATCAAGCCTGGTGAATGCAAAATTGGAATTATGCCAGGCTACATTCATAAACCTGGTCGTGTGGGAATTGTTTCTCGATCTGGTACCTTGACCTATGAAGCGGTTTTCCAAACAACCGCTGTTGGCCTTGGACAATCCACTTGTGTTGGTATTGGGGGGGATCCTTTTAATGGTACAAACTTTGTTGATTGCATGGAAAAATTCTTGGCAGATCCTCAAACAGAAGGTATCGTTCTTATAGGAGAGATTGGTGGGACTGCAGAAGAGGATGCCGCTGCATTGATAAAGGAAAGTGGAACTGAGAAGCCAATTGTTGCATTTATTGCTGGACTAACTGCTCCCCCTGGTCGTCGTATGGGTCATGCTGGAGCTATTGTATCGGGAGGAAAGGGAACAGCGCAAGATAAAATAAAGACGCTTAGGGAAGCTGGGGTTACAGTGGTGGAGTCTCCTGCAAAAATTGGGGTTGCCATGCTTGAAGTGTTCAAGCAGAGGGGACTAGTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004774 GO:0004775 GO:0004776 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006104 GO:0006105 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0010035 GO:0010038 GO:0015980 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017144 GO:0019637 GO:0019693 GO:0019752 GO:0030312 GO:0031974 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046483 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0071944 GO:0072350 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00640 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00640 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

CoA_binding Ligase_CoA

Protein Analysis

335

Amino Acids

34.84

Weight (kDa)

8.89

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoA_binding	PF02629	44 - 137	4.4e-33	CoA binding domain
Succ_CoA_lig	PF13607	184 - 318	8.2e-11	Succinyl-CoA ligase like flavodoxin domain
Ligase_CoA	PF00549	190 - 311	3.1e-30	CoA-ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08300 AT5G23250 AT5G23250 AT5G23250
fragaria_vesca	FvH4_5g18391
malus_domestica	MD06G1239800.v1.1 MD14G1245700.v1.1
prunus_persica	Prupe.5G243700_v2.0.a1 Prupe.5G243700_v2.0.a1
pyrus_communis	pycom06g21530 pycom14g20660
rosa_chinensis	RchiOBHm_Chr7g0177081
rosa_laevigata	RLG00000005558
rosa_multiflora	Rmu_sc0005310.1_g000024 Rmu_sc0005310.1_g000025 Rmu_sc0005912.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276110
rosa_rugosa	Rorug06G0403600
rosa_samantha	Rh7AG003000 Rh7CG002600 Rh7DG003100
rosa_wichuraiana	Rw7G000250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	581
AccB1I	GGYRCC	1 cut(s)	581
AccBSI	CCGCTC	1 cut(s)	104
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	2 cut(s)	144, 469
AclWI	GGATC	4 cut(s)	393, 653, 666, 704
AcsI	RAATTY	1 cut(s)	698
AfaI	GTAC	3 cut(s)	432, 583, 673
AfiI	CCNNNNNNNGG	2 cut(s)	242, 668
AflIII	ACRYGT	1 cut(s)	433
AgsI	TTSAA	3 cut(s)	277, 977, 985
AhdI	GACNNNNNGTC	1 cut(s)	269
AhlI	ACTAGT	1 cut(s)	997
AjnI	CCWGG	6 cut(s)	153, 490, 505, 532, 550, 841
AjuI	GAANNNNNNNTTGG	2 cut(s)	504, 536
AluBI	AGCT	6 cut(s)	20, 25, 377, 382, 869, 926
AluI	AGCT	6 cut(s)	20, 25, 377, 382, 869, 926
Alw26I	GTCTC	1 cut(s)	951
AlwI	GGATC	4 cut(s)	393, 653, 666, 704
AoxI	GGCC	1 cut(s)	622
ApeKI	GCWGC	5 cut(s)	98, 347, 353, 443, 773
ApoI	RAATTY	1 cut(s)	698
Asp700I	GAANNNNTTC	1 cut(s)	568
Asp718I	GGTACC	1 cut(s)	581
AspLEI	GCGC	2 cut(s)	87, 898
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	479
BamHI	GGATCC	1 cut(s)	658
BanI	GGYRCC	1 cut(s)	581
BbsI	GAAGAC	1 cut(s)	265
BbvI	GCAGC	5 cut(s)	110, 334, 340, 430, 760
BccI	CCATC	2 cut(s)	61, 206
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	6 cut(s)	155, 492, 507, 534, 552, 843
BciVI	GTATCC	1 cut(s)	422
BcoDI	GTCTC	1 cut(s)	951
BcuI	ACTAGT	1 cut(s)	997
BfaI	CTAG	3 cut(s)	17, 998, 1006
BfmI	CTRYAG	1 cut(s)	756
BfoI	RGCGCY	1 cut(s)	88
BfuI	GTATCC	1 cut(s)	422
BlpI	GCTNAGC	2 cut(s)	21, 378
Bme1390I	CCNGG	6 cut(s)	155, 492, 507, 534, 552, 843
Bme18I	GGWCC	1 cut(s)	479
BmeRI	GACNNNNNGTC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	2 cut(s)	583, 660
BmrFI	CCNGG	6 cut(s)	155, 492, 507, 534, 552, 843
BmsI	GCATC	3 cut(s)	50, 408, 757
BpiI	GAAGAC	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	885
Bpu10I	CCTNAGC	1 cut(s)	917
Bpu1102I	GCTNAGC	2 cut(s)	21, 378
BsaAI	YACGTR	1 cut(s)	434
BsaJI	CCNNGG	4 cut(s)	154, 490, 625, 841
BsaXI	ACNNNNNCTCC	2 cut(s)	858, 888
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 668
Bse118I	RCCGGY	2 cut(s)	115, 164
Bse1I	ACTGG	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	375
BseBI	CCWGG	6 cut(s)	155, 492, 507, 534, 552, 843
BseDI	CCNNGG	4 cut(s)	154, 490, 625, 841
BseGI	GGATG	1 cut(s)	772
BseLI	CCNNNNNNNGG	2 cut(s)	242, 668
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	4 cut(s)	243, 369, 396, 789
BseNI	ACTGG	1 cut(s)	269
BseXI	GCAGC	5 cut(s)	110, 334, 340, 430, 760
BseYI	CCCAGC	1 cut(s)	926
Bsh1236I	CGCG	2 cut(s)	144, 469
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	624
BshNI	GGYRCC	1 cut(s)	581
BsiEI	CGRYCG	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	116, 165
BslFI	GGGAC	2 cut(s)	276, 766
BslI	CCNNNNNNNGG	2 cut(s)	242, 668
BsmAI	GTCTC	1 cut(s)	951
BsmFI	GGGAC	2 cut(s)	276, 766
BsmI	GAATGC	1 cut(s)	518
BsnI	GGCC	1 cut(s)	624
Bsp143I	GATC	6 cut(s)	27, 36, 385, 575, 658, 709
Bsp1720I	GCTNAGC	2 cut(s)	21, 378
BspANI	GGCC	1 cut(s)	624
BspCNI	CTCAG	4 cut(s)	244, 370, 397, 790
BspFNI	CGCG	2 cut(s)	144, 469
BspLI	GGNNCC	2 cut(s)	583, 660
BspMAI	CTGCAG	1 cut(s)	760
BspPI	GGATC	4 cut(s)	393, 653, 666, 704
BspT107I	GGYRCC	1 cut(s)	581
BsrBI	CCGCTC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	375
BsrFI	RCCGGY	2 cut(s)	115, 164
BsrI	ACTGG	1 cut(s)	269
BssAI	RCCGGY	2 cut(s)	115, 164
BssECI	CCNNGG	4 cut(s)	154, 490, 625, 841
BssMI	GATC	6 cut(s)	27, 36, 385, 575, 658, 709
BssT1I	CCWWGG	1 cut(s)	625
Bst2UI	CCWGG	6 cut(s)	155, 492, 507, 534, 552, 843
Bst4CI	ACNGT	1 cut(s)	937
Bst6I	CTCTTC	1 cut(s)	756
BstAPI	GCANNNNNTGC	1 cut(s)	821
BstBAI	YACGTR	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	50, 117
BstDEI	CTNAG	6 cut(s)	21, 252, 378, 405, 798, 917
BstF5I	GGATG	1 cut(s)	772
BstFNI	CGCG	2 cut(s)	144, 469
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	2 cut(s)	87, 898
BstKTI	GATC	6 cut(s)	30, 39, 388, 578, 661, 712
BstMAI	GTCTC	1 cut(s)	951
BstMBI	GATC	6 cut(s)	27, 36, 385, 575, 658, 709
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	6 cut(s)	150, 165, 174, 353, 374, 821
BstNI	CCWGG	6 cut(s)	155, 492, 507, 534, 552, 843
BstSCI	CCNGG	6 cut(s)	153, 490, 505, 532, 550, 841
BstSFI	CTRYAG	1 cut(s)	756
BstUI	CGCG	2 cut(s)	144, 469
BstV1I	GCAGC	5 cut(s)	110, 334, 340, 430, 760
BstV2I	GAAGAC	1 cut(s)	265
BstX2I	RGATCY	3 cut(s)	385, 658, 709
BstYI	RGATCY	3 cut(s)	385, 658, 709
BsuI	GTATCC	1 cut(s)	422
BsuRI	GGCC	1 cut(s)	624
BtsCI	GGATG	1 cut(s)	772
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	3 cut(s)	184, 402, 942
Cac8I	GCNNGC	2 cut(s)	50, 117
CfoI	GCGC	2 cut(s)	87, 898
Cfr10I	RCCGGY	2 cut(s)	115, 164
Cfr13I	GGNCC	1 cut(s)	479
CseI	GACGC	2 cut(s)	133, 922
CsiI	ACCWGGT	1 cut(s)	550
Csp6I	GTAC	3 cut(s)	431, 582, 672
CspCI	CAANNNNNGTGG	2 cut(s)	625, 660
CviAII	CATG	4 cut(s)	422, 691, 860, 970
CviQI	GTAC	3 cut(s)	431, 582, 672
DdeI	CTNAG	6 cut(s)	21, 252, 378, 405, 798, 917
DpnI	GATC	6 cut(s)	29, 38, 387, 577, 660, 711
DpnII	GATC	6 cut(s)	27, 36, 385, 575, 658, 709
DriI	GACNNNNNGTC	1 cut(s)	269
Eam1104I	CTCTTC	1 cut(s)	756
Eam1105I	GACNNNNNGTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	756
EciI	GGCGGA	2 cut(s)	96, 261
Eco130I	CCWWGG	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	479
EcoRII	CCWGG	6 cut(s)	153, 490, 505, 532, 550, 841
EcoT14I	CCWWGG	1 cut(s)	625
ErhI	CCWWGG	1 cut(s)	625
FaeI	CATG	4 cut(s)	425, 694, 863, 973
FaqI	GGGAC	2 cut(s)	276, 766
FatI	CATG	4 cut(s)	421, 690, 859, 969
FblI	GTMKAC	1 cut(s)	129
FokI	GGATG	1 cut(s)	779
FspBI	CTAG	3 cut(s)	17, 998, 1006
GlaI	GCGC	2 cut(s)	86, 897
GsaI	CCCAGC	1 cut(s)	930
GsuI	CTGGAG	1 cut(s)	885
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	624
HapII	CCGG	2 cut(s)	116, 165
HgaI	GACGC	2 cut(s)	133, 922
HhaI	GCGC	2 cut(s)	87, 898
Hin1II	CATG	4 cut(s)	425, 694, 863, 973
Hin6I	GCGC	2 cut(s)	85, 896
HinP1I	GCGC	2 cut(s)	85, 896
HincII	GTYRAC	2 cut(s)	69, 130
HindII	GTYRAC	2 cut(s)	69, 130
HinfI	GANTC	1 cut(s)	944
HpaII	CCGG	2 cut(s)	116, 165
HphI	GGTGA	1 cut(s)	521
Hpy166II	GTNNAC	3 cut(s)	69, 130, 1003
Hpy188III	TCNNGA	2 cut(s)	573, 879
Hpy8I	GTNNAC	3 cut(s)	69, 130, 1003
Hpy99I	CGWCG	1 cut(s)	852
HpyAV	CCTTC	3 cut(s)	235, 433, 716
HpyCH4III	ACNGT	1 cut(s)	937
HpyCH4IV	ACGT	2 cut(s)	71, 433
HpyCH4V	TGCA	9 cut(s)	287, 356, 399, 516, 690, 758, 776, 815, 953
HpyF10VI	GCNNNNNNNGC	6 cut(s)	150, 165, 174, 353, 374, 821
HpyF3I	CTNAG	6 cut(s)	21, 252, 378, 405, 798, 917
HpySE526I	ACGT	2 cut(s)	71, 433
Hsp92II	CATG	4 cut(s)	425, 694, 863, 973
HspAI	GCGC	2 cut(s)	85, 896
KpnI	GGTACC	1 cut(s)	585
KroI	GCCGGC	1 cut(s)	115
KroNI	GCCGGC	1 cut(s)	117
Kzo9I	GATC	6 cut(s)	27, 36, 385, 575, 658, 709
LmnI	GCTCC	3 cut(s)	109, 841, 866
Lsp1109I	GCAGC	5 cut(s)	110, 334, 340, 430, 760
LweI	GCATC	3 cut(s)	50, 408, 757
MabI	ACCWGGT	1 cut(s)	550
MaeI	CTAG	3 cut(s)	17, 998, 1006
MaeII	ACGT	2 cut(s)	71, 433
MaeIII	GTNAC	3 cut(s)	89, 229, 931
MalI	GATC	6 cut(s)	29, 38, 387, 577, 660, 711
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	6 cut(s)	27, 36, 385, 575, 658, 709
MboII	GAAGA	2 cut(s)	265, 773
MfeI	CAATTG	1 cut(s)	807
MflI	RGATCY	3 cut(s)	385, 658, 709
MlyI	GAGTC	1 cut(s)	953
MnlI	CCTC	6 cut(s)	345, 400, 723, 757, 875, 984
MroNI	GCCGGC	1 cut(s)	115
MroXI	GAANNNNTTC	1 cut(s)	568
MseI	TTAA	2 cut(s)	450, 666
MslI	CAYNNNNRTG	1 cut(s)	215
MspA1I	CMGCKG	3 cut(s)	353, 617, 773
MspI	CCGG	2 cut(s)	116, 165
MspR9I	CCNGG	6 cut(s)	155, 492, 507, 534, 552, 843
MunI	CAATTG	1 cut(s)	807
Mva1269I	GAATGC	1 cut(s)	518
MvaI	CCWGG	6 cut(s)	155, 492, 507, 534, 552, 843
MvnI	CGCG	2 cut(s)	144, 469
MwoI	GCNNNNNNNGC	6 cut(s)	150, 165, 174, 353, 374, 821
NaeI	GCCGGC	1 cut(s)	117
NdeII	GATC	6 cut(s)	27, 36, 385, 575, 658, 709
NgoMIV	GCCGGC	1 cut(s)	115
NlaIII	CATG	4 cut(s)	425, 694, 863, 973
NlaIV	GGNNCC	2 cut(s)	583, 660
NmuCI	GTSAC	1 cut(s)	89
PctI	GAATGC	1 cut(s)	518
PdiI	GCCGGC	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	568
Ple19I	CGATCG	1 cut(s)	39
PleI	GAGTC	1 cut(s)	952
PpsI	GAGTC	1 cut(s)	952
Ppu21I	YACGTR	1 cut(s)	434
Psp6I	CCWGG	6 cut(s)	153, 490, 505, 532, 550, 841
PspFI	CCCAGC	1 cut(s)	926
PspGI	CCWGG	6 cut(s)	153, 490, 505, 532, 550, 841
PspN4I	GGNNCC	2 cut(s)	583, 660
PspPI	GGNCC	1 cut(s)	479
PsrI	GAACNNNNNNTAC	2 cut(s)	315, 347
PstI	CTGCAG	1 cut(s)	760
PsuI	RGATCY	3 cut(s)	385, 658, 709
PvuI	CGATCG	1 cut(s)	39
RsaI	GTAC	3 cut(s)	432, 583, 673
RsaNI	GTAC	3 cut(s)	431, 582, 672
RseI	CAYNNNNRTG	1 cut(s)	215
SalI	GTCGAC	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	450, 666
Sau3AI	GATC	6 cut(s)	27, 36, 385, 575, 658, 709
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	1 cut(s)	953
ScrFI	CCNGG	6 cut(s)	155, 492, 507, 534, 552, 843
SexAI	ACCWGGT	1 cut(s)	550
SfaNI	GCATC	3 cut(s)	50, 408, 757
SfcI	CTRYAG	1 cut(s)	756
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	1 cut(s)	215
SpeI	ACTAGT	1 cut(s)	997
SspMI	CTAG	3 cut(s)	17, 998, 1006
StyD4I	CCNGG	6 cut(s)	153, 490, 505, 532, 550, 841
StyI	CCWWGG	1 cut(s)	625
TaaI	ACNGT	1 cut(s)	937
TaiI	ACGT	2 cut(s)	74, 436
TaqI	TCGA	4 cut(s)	35, 129, 201, 574
TauI	GCSGC	6 cut(s)	104, 112, 115, 353, 472, 773
Tru1I	TTAA	2 cut(s)	450, 666
Tru9I	TTAA	2 cut(s)	450, 666
TscAI	CASTG	3 cut(s)	191, 409, 942
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	5 cut(s)	98, 347, 353, 443, 773
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	2 cut(s)	533, 609
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	3 cut(s)	191, 409, 942
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	1 cut(s)	698
XmiI	GTMKAC	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	568
XspI	CTAG	3 cut(s)	17, 998, 1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.