Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009184

Physical Location & Seq

Genomic Coordinates Reverse (-)

54758197 .. 54763414

Gene Structure 5218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0403600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3027 bp

ATGGGGAAGCCTCTCTGCTACGGTACACACTCCATTTTGCTCTTTGAATCAGTTTCTAATTTCTTCCATGATGATTTCACGGAGTTGCTTTATTCTGCAGATGCAGGGAATGCAGAAGAAGTTTCTCAAGCTCTAATCAACAAGATCTACGGCGTTTTCTCCCATGGCCTCCATTTCGCATCATCACCAGTCTCCTCCTTGAGAACCAACGAACTCGATTTGGTTCGGAGTGTGTTACAAATGTTACAAGGATATTCCAGTTCACTATTTTATTGGGATCATAATAATGGAAACTCTTTTCAAGCCAAAACTGGGATATATGTTAATCACCTCTCCCATACAAGTCTCCACGCCATTGTCAGTCAGTTTATGTATGCTGCAACTTGCTTGCAACTCATACAAATTGTGGTCGACAAAGTCGAGAAATCTGCGAGATTACCTCCTCCTACTTTGAGGGCTTTTGTGTCTTCTGTTTCTGCATGGCTTAAGAGGTGGCGTGATATTGCTTTAAAGGAGGAAGTGCGGGTAAGCAAAGATGACAGTGGAGCGACTCCTACATTGTTGGGATTGGCCAGCTCCTTATCCAGTCTATGCTCAGGTGCGGAGTCTCTGTTGCAAATAGTGCATTGTGCCATTCCCCAAGTGTATTTTGAGTCCGGTCCTTCTCTTTCTGCTGCTGAGTTGACTCTTCATGTCCTTGACTCTCTTTACAAGAAACTAGATGAAGTATGCCTTGTCCGAGGTGGTGAGGACGAAGATTACCAGATGTTACTTCATTTATTTATTGGAACTATATTGCCATACATTGAGGGTCTTGATTCTTGGCTTTTTGAAGGAACACTTGATGATCCCTATGAGGAGATGTTCTTCTATCCCAATAGAGCAGTTTCAGTTGATAAGGCTGACTTCTGGGAGAAGAGCTATCTATTGAGGCAAGTGCGGGGTCAAATCTTAGACGTTGGGCGTGCTGCTCCATCTCTTGCCAGTGACCGTGCATCTGTAATAAATGACAAAAGGGGAGTGGGTCAGAGGGAATCCATCTCATGTCCGTTGTTTATTAAGGACATAGCTAAGTCGATCGTTTCTGCTGGAAAATCATTACAGCTGATCCGGCATATTCCTATGACTTCTTTAGGTGAAGGAAATTACTGTGCGATTGATGGTTTTGGCAGTTCGAATAAAGGTGTTCACCGTGGGGAGAGCATTGCAGGTTTAACTTTGTCAGAAGTTTTTTGCGTGTCATTAGCAGGTCTTGTAGGACATGGCGATCATATCTTTCAGTCTATTGCAAGTAAACAAAAACCGGAAAGTGATGATGGTGTGATTGAGTCAGTAAGAAGCTCAGAAAAACCTTGGTGTAAGTTCTTGGTTGATACGCTGTTGGAAAAAAGATTGATTGAAACCAACTCTCCACATGCGGATGGAAAAGCATTCCCTGGTGCGAAAGAAGAGAGTATGTTTTCAGATTTGGTAGACAAATGTCCCCTTTCAAGATCCTTCTGTCAAGAAAATCCAGTTACAACAGTCTGCCAAAAAATCCTTTCTAAGAATGGGGATGCATGGAAAACCTTGAACTTATCTAGAAATTTTAGCCTGCCCCCTTTAAATGATGAAGTTCTACGAGCGGCTATATTTGGCGGGGATAGTGGATCAACTTCTTCGGCCAAAGGAACCAACTATACATTTGGTTTTCGGTTTGGTGAATCTGAACATATTCGTTCACAAGACGACTCAAAAATGTTACAAATGTTGTTTCCTTTTCCCACTCTTCTTCCTTCTTTTGAGGATGATCTCCGCATGTCAGAGCTCTTACCTTTCCAGAAAAATAGCACCCTTCCATCTAGAGTTCTTACTTGGATTCAGTATTTTGAACCGAGAAGTACTCCACTTCCTGTGGTTATAGTGCAGGAATGTCTTACTGCCTACATTCAGAAGCAGGTGGATTGTATTGGCAGGCATGTATTGTCGAAATTGATGAATGATTGGAAGTTGATGGATGAACTGGCAGTGTTGCGTGCTATTTACTTGTTAGGGTCAGGTGATCTACTACAGCACTTCTTGACCATAATTTTCAATAAGCTGGATAAAGGAGAAACATGGGATGATGATTTCGAGTTAAACACTATATTGCAGGAATCTATAAGAAACTCTGCTGATGGTGTGCTACTAAGTGTTCCTGATTCATTGATTGTATCCCTCACCAAAAATCAAGATTTGAATGGCAATGAGCAGCCTAGCATGGCTTCCCTTCCCTCAACTCCTCGTAAAAGTCGTGCTAACAGCTTTGGAATGGATGGACTTGATCTACTACAATTTACATACAAGGTCTCTTGGCCACTTGAACTTATTGCAAATGCAGAAGCGATCAAGAAATATAACCAAGTCATGGGATTCTTGCTGAAGGTCAAGCGAGCAAAGTTTGTACTGGATAAAGCTCGAAGATGGATGTGGAAGGGTAGAGGCAGGGCAGCGAACAGCTTTAAGCATCACTGGTTAGTGGAGCAGAAACTTCTCCATTTTGTGGATGCGTTTCACCAGTATGTGATGGACAGAGTGTATCACAATGCATGGCGTGAACTTTGTGAAGGTATGGCAGCCGCTCGTTCTCTGGATGAAGTCATTGAAGTACATGAGTCATACTTGTTGTCAATTCAGCGACAGTGCTTTGTAGTTCCAGATAAGCTGTGGGCTCTCATTGCAACCAGGATAAACAACATTTTGGGATTAGCATTGGACTTTTACTCTATACAGCTGACACTTAGTGGTGGAGCAGTTTCTGCAATCAAGGCCAAATGTGAAATGGAAGTTGAACGTATTGAGAAACAGTTTGATGATTGCATCGCTTTTCTGCTCAGAGTACTCTCCTTCAAACTCAATGTAGGACACTTCCCTCATTTAGCAGATTTGGTTACTAGGATCAACTACAACCACTTTTACATGTCAGATACTGGAAACCTAAGGACTCTCCCAAGCTCTGAAAATGTTGCTTCTAGACTGGGAAAAGCTTTTTTAGGTAGAACAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004774 GO:0004775 GO:0004776 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006104 GO:0006105 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0010035 GO:0010038 GO:0015980 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017144 GO:0019637 GO:0019693 GO:0019752 GO:0030312 GO:0031974 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046483 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0071944 GO:0072350 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00640 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00640 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

CoA_binding Ligase_CoA

Protein Analysis

1008

Amino Acids

112.83

Weight (kDa)

6.04

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCP5-Mod21_C	PF20685	71 - 126	2.2e-06	Gamma-Tubulin ring complex non-core subunit mod21, C-terminal
GCP_N_terminal	PF17681	75 - 380	4.4e-22	Gamma tubulin complex component N-terminal
GCP_C_terminal	PF04130	664 - 979	2.3e-66	Gamma tubulin complex component C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08300 AT5G23250 AT5G23250 AT5G23250
fragaria_vesca	FvH4_5g18391
malus_domestica	MD06G1239800.v1.1 MD14G1245700.v1.1
prunus_persica	Prupe.5G243700_v2.0.a1 Prupe.5G243700_v2.0.a1
pyrus_communis	pycom06g21530 pycom14g20660
rosa_chinensis	RchiOBHm_Chr7g0177081
rosa_laevigata	RLG00000005558
rosa_multiflora	Rmu_sc0005310.1_g000024 Rmu_sc0005310.1_g000025 Rmu_sc0005912.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276110
rosa_rugosa	Rorug06G0403600
rosa_samantha	Rh7AG003000 Rh7CG002600 Rh7DG003100
rosa_wichuraiana	Rw7G000250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1927
Acc36I	ACCTGC	3 cut(s)	1199, 1238, 1927
AccB7I	CCANNNNNTGG	2 cut(s)	2386, 2521
AccBSI	CCGCTC	2 cut(s)	1625, 2600
AccI	GTMKAC	2 cut(s)	411, 1473
AciI	CCGC	8 cut(s)	523, 602, 940, 1418, 1625, 1638, 1795, 2598
AclWI	GGATC	6 cut(s)	285, 842, 1102, 1488, 1657, 2924
AcoI	YGGCCR	3 cut(s)	570, 1662, 2333
AcsI	RAATTY	1 cut(s)	1585
AcuI	CTGAAG	1 cut(s)	2420
AdeI	CACNNNGTG	1 cut(s)	2762
AfaI	GTAC	5 cut(s)	25, 1882, 2424, 2628, 2859
AfiI	CCNNNNNNNGG	3 cut(s)	312, 2386, 2521
AflII	CTTAAG	1 cut(s)	485
AflIII	ACRYGT	1 cut(s)	2937
AjnI	CCWGG	2 cut(s)	1435, 2702
Alw21I	GWGCWC	1 cut(s)	1809
Alw26I	GTCTC	4 cut(s)	196, 350, 612, 2332
AlwI	GGATC	6 cut(s)	285, 842, 1102, 1488, 1657, 2924
AlwNI	CAGNNNCTG	2 cut(s)	2777, 2948
AoxI	GGCC	5 cut(s)	166, 570, 1662, 2333, 2787
ApeKI	GCWGC	6 cut(s)	377, 674, 968, 2230, 2468, 2594
ApoI	RAATTY	1 cut(s)	1585
Asp700I	GAANNNNTTC	1 cut(s)	1713
AspS9I	GGNCC	1 cut(s)	659
AsuHPI	GGTGA	9 cut(s)	177, 320, 758, 1148, 1181, 1712, 2051, 2191, 2525
AsuII	TTCGAA	1 cut(s)	1175
AvaII	GGWCC	1 cut(s)	659
AxyI	CCTNAGG	1 cut(s)	2957
BalI	TGGCCA	2 cut(s)	572, 2335
BanII	GRGCYC	2 cut(s)	1809, 2692
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	1809
BbvI	GCAGC	6 cut(s)	364, 661, 955, 2242, 2480, 2606
BceAI	ACGGC	1 cut(s)	166
BcgI	CGANNNNNNTGC	2 cut(s)	410, 444
BciT130I	CCWGG	2 cut(s)	1437, 2704
BciVI	GTATCC	1 cut(s)	2203
BcoDI	GTCTC	4 cut(s)	196, 350, 612, 2332
BfaI	CTAG	6 cut(s)	719, 1581, 1842, 2235, 2913, 2991
BfmI	CTRYAG	2 cut(s)	96, 2048
BfrI	CTTAAG	1 cut(s)	485
BfuAI	ACCTGC	3 cut(s)	1199, 1238, 1927
BfuI	GTATCC	1 cut(s)	2203
BglII	AGATCT	1 cut(s)	144
BisI	GCNGC	8 cut(s)	378, 675, 969, 1626, 2231, 2469, 2595, 2598
BlsI	GCNGC	8 cut(s)	379, 676, 970, 1627, 2232, 2470, 2596, 2599
BmcAI	AGTACT	2 cut(s)	1882, 2859
Bme1390I	CCNGG	2 cut(s)	1437, 2704
Bme18I	GGWCC	1 cut(s)	659
BmgT120I	GGNCC	1 cut(s)	659
BmiI	GGNNCC	1 cut(s)	1672
BmrFI	CCNGG	2 cut(s)	1437, 2704
BmrI	ACTGGG	2 cut(s)	321, 3005
BmsI	GCATC	7 cut(s)	91, 188, 1004, 1546, 2494, 2515, 2847
BmuI	ACTGGG	2 cut(s)	321, 3005
BoxI	GACNNNNGTC	1 cut(s)	1479
BpiI	GAAGAC	1 cut(s)	459
BplI	GAGNNNNNCTC	4 cut(s)	424, 456, 1867, 1899
Bpu10I	CCTNAGC	1 cut(s)	595
Bpu14I	TTCGAA	1 cut(s)	1175
BpuEI	CTTGAG	2 cut(s)	111, 220
BsaI	GGTCTC	1 cut(s)	2332
BsaJI	CCNNGG	5 cut(s)	163, 739, 1192, 1352, 1435
BsaWI	WCCGGW	2 cut(s)	656, 1303
BsaXI	ACNNNNNCTCC	4 cut(s)	596, 626, 1393, 1423
Bsc4I	CCNNNNNNNGG	3 cut(s)	312, 2386, 2521
Bse21I	CCTNAGG	1 cut(s)	2957
Bse3DI	GCAATG	3 cut(s)	1203, 2230, 2694
BseBI	CCWGG	2 cut(s)	1437, 2704
BseDI	CCNNGG	5 cut(s)	163, 739, 1192, 1352, 1435
BseGI	GGATG	9 cut(s)	1426, 1561, 1792, 2002, 2107, 2299, 2451, 2530, 2617
BseLI	CCNNNNNNNGG	3 cut(s)	312, 2386, 2521
BseMI	GCAATG	3 cut(s)	1203, 2230, 2694
BseMII	CTCAG	4 cut(s)	609, 669, 1356, 2866
BseRI	GAGGAG	4 cut(s)	184, 432, 872, 2250
BseXI	GCAGC	6 cut(s)	364, 661, 955, 2242, 2480, 2606
BsgI	GTGCAG	1 cut(s)	1925
Bsh1285I	CGRYCG	1 cut(s)	1080
BshFI	GGCC	5 cut(s)	168, 572, 1664, 2335, 2789
BsiEI	CGRYCG	1 cut(s)	1080
BsiHKAI	GWGCWC	1 cut(s)	1809
BsiSI	CCGG	3 cut(s)	657, 1111, 1304
BslFI	GGGAC	1 cut(s)	1467
BslI	CCNNNNNNNGG	3 cut(s)	312, 2386, 2521
BsmAI	GTCTC	4 cut(s)	196, 350, 612, 2332
BsmFI	GGGAC	1 cut(s)	1467
BsmI	GAATGC	2 cut(s)	115, 1430
BsnI	GGCC	5 cut(s)	168, 572, 1664, 2335, 2789
Bso31I	GGTCTC	1 cut(s)	2332
Bsp119I	TTCGAA	1 cut(s)	1175
Bsp1286I	GDGCHC	2 cut(s)	1809, 2692
Bsp19I	CCATGG	1 cut(s)	163
BspACI	CCGC	8 cut(s)	523, 602, 940, 1418, 1625, 1638, 1795, 2598
BspANI	GGCC	5 cut(s)	168, 572, 1664, 2335, 2789
BspCNI	CTCAG	4 cut(s)	608, 670, 1355, 2865
BspLI	GGNNCC	1 cut(s)	1672
BspMAI	CTGCAG	1 cut(s)	100
BspMI	ACCTGC	3 cut(s)	1199, 1238, 1927
BspPI	GGATC	6 cut(s)	285, 842, 1102, 1488, 1657, 2924
BspQI	GCTCTTC	1 cut(s)	911
BspT104I	TTCGAA	1 cut(s)	1175
BspTI	CTTAAG	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	2332
BsrBI	CCGCTC	2 cut(s)	1625, 2600
BsrDI	GCAATG	3 cut(s)	1203, 2230, 2694
BssECI	CCNNGG	5 cut(s)	163, 739, 1192, 1352, 1435
BssT1I	CCWWGG	2 cut(s)	163, 1352
Bst2UI	CCWGG	2 cut(s)	1437, 2704
Bst4CI	ACNGT	8 cut(s)	23, 542, 992, 1151, 1193, 1525, 2661, 2826
Bst6I	CTCTTC	4 cut(s)	693, 911, 1443, 1773
BstAFI	CTTAAG	1 cut(s)	485
BstAPI	GCANNNNNTGC	3 cut(s)	110, 622, 2777
BstBI	TTCGAA	1 cut(s)	1175
BstC8I	GCNNGC	7 cut(s)	389, 574, 966, 1595, 1955, 2016, 2412
BstDSI	CCRYGG	2 cut(s)	163, 1192
BstF5I	GGATG	9 cut(s)	1426, 1561, 1792, 2002, 2107, 2299, 2451, 2530, 2617
BstMAI	GTCTC	4 cut(s)	196, 350, 612, 2332
BstMCI	CGRYCG	1 cut(s)	1080
BstMWI	GCNNNNNNNGC	6 cut(s)	110, 622, 1111, 2696, 2777, 2786
BstNI	CCWGG	2 cut(s)	1437, 2704
BstNSI	RCATGY	4 cut(s)	1418, 1801, 1961, 2941
BstPAI	GACNNNNGTC	1 cut(s)	1479
BstSCI	CCNGG	2 cut(s)	1435, 2702
BstSFI	CTRYAG	2 cut(s)	96, 2048
BstV1I	GCAGC	6 cut(s)	364, 661, 955, 2242, 2480, 2606
BstV2I	GAAGAC	1 cut(s)	459
BstX2I	RGATCY	2 cut(s)	144, 1493
BstYI	RGATCY	2 cut(s)	144, 1493
Bsu36I	CCTNAGG	1 cut(s)	2957
BsuI	GTATCC	1 cut(s)	2203
BsuRI	GGCC	5 cut(s)	168, 572, 1664, 2335, 2789
BtgI	CCRYGG	2 cut(s)	163, 1192
BtgZI	GCGATG	1 cut(s)	2824
BtsCI	GGATG	9 cut(s)	1426, 1561, 1792, 2002, 2107, 2299, 2451, 2530, 2617
BtsI	GCAGTG	1 cut(s)	2013
BtsIMutI	CAGTG	5 cut(s)	547, 991, 2013, 2488, 2666
BveI	ACCTGC	3 cut(s)	1199, 1238, 1927
Cac8I	GCNNGC	7 cut(s)	389, 574, 966, 1595, 1955, 2016, 2412
CaiI	CAGNNNCTG	2 cut(s)	2777, 2948
Cfr13I	GGNCC	1 cut(s)	659
Csp6I	GTAC	5 cut(s)	24, 1881, 2423, 2627, 2858
CviQI	GTAC	5 cut(s)	24, 1881, 2423, 2627, 2858
DraI	TTTAAA	2 cut(s)	510, 1605
DraIII	CACNNNGTG	1 cut(s)	2762
EaeI	YGGCCR	3 cut(s)	570, 1662, 2333
Eam1104I	CTCTTC	4 cut(s)	693, 911, 1443, 1773
EarI	CTCTTC	4 cut(s)	693, 911, 1443, 1773
Ecl136II	GAGCTC	1 cut(s)	1807
Eco130I	CCWWGG	2 cut(s)	163, 1352
Eco24I	GRGCYC	2 cut(s)	1809, 2692
Eco31I	GGTCTC	1 cut(s)	2332
Eco47I	GGWCC	1 cut(s)	659
Eco53kI	GAGCTC	1 cut(s)	1807
Eco57I	CTGAAG	1 cut(s)	2420
Eco81I	CCTNAGG	1 cut(s)	2957
EcoICRI	GAGCTC	1 cut(s)	1807
EcoRII	CCWGG	2 cut(s)	1435, 2702
EcoT14I	CCWWGG	2 cut(s)	163, 1352
EcoT22I	ATGCAT	2 cut(s)	1561, 2569
EcoT38I	GRGCYC	2 cut(s)	1809, 2692
ErhI	CCWWGG	2 cut(s)	163, 1352
FalI	AAGNNNNNCTT	6 cut(s)	717, 749, 825, 857, 890, 922
FaqI	GGGAC	1 cut(s)	1467
FauI	CCCGC	3 cut(s)	516, 933, 1631
FblI	GTMKAC	2 cut(s)	411, 1473
Fnu4HI	GCNGC	8 cut(s)	378, 675, 969, 1626, 2231, 2469, 2595, 2598
FokI	GGATG	9 cut(s)	1433, 1568, 1799, 2009, 2114, 2306, 2458, 2537, 2624
FriOI	GRGCYC	2 cut(s)	1809, 2692
Fsp4HI	GCNGC	8 cut(s)	378, 675, 969, 1626, 2231, 2469, 2595, 2598
FspBI	CTAG	6 cut(s)	719, 1581, 1842, 2235, 2913, 2991
GluI	GCNGC	8 cut(s)	378, 675, 969, 1626, 2231, 2469, 2595, 2598
HaeIII	GGCC	5 cut(s)	168, 572, 1664, 2335, 2789
HapII	CCGG	3 cut(s)	657, 1111, 1304
HincII	GTYRAC	2 cut(s)	412, 684
HindII	GTYRAC	2 cut(s)	412, 684
HindIII	AAGCTT	1 cut(s)	3003
HpaII	CCGG	3 cut(s)	657, 1111, 1304
HphI	GGTGA	9 cut(s)	177, 320, 758, 1148, 1181, 1712, 2051, 2191, 2525
Hpy166II	GTNNAC	9 cut(s)	26, 263, 412, 684, 1189, 1295, 1474, 1721, 2576
Hpy8I	GTNNAC	9 cut(s)	26, 263, 412, 684, 1189, 1295, 1474, 1721, 2576
HpyCH4III	ACNGT	8 cut(s)	23, 542, 992, 1151, 1193, 1525, 2661, 2826
HpyCH4IV	ACGT	2 cut(s)	957, 2812
HpyF10VI	GCNNNNNNNGC	6 cut(s)	110, 622, 1111, 2696, 2777, 2786
HpySE526I	ACGT	2 cut(s)	957, 2812
LguI	GCTCTTC	1 cut(s)	911
LmnI	GCTCC	5 cut(s)	545, 581, 976, 2500, 2768
Lsp1109I	GCAGC	6 cut(s)	364, 661, 955, 2242, 2480, 2606
LweI	GCATC	7 cut(s)	91, 188, 1004, 1546, 2494, 2515, 2847
MaeI	CTAG	6 cut(s)	719, 1581, 1842, 2235, 2913, 2991
MaeII	ACGT	2 cut(s)	957, 2812
MaeIII	GTNAC	7 cut(s)	234, 243, 768, 986, 1516, 1740, 2908
MbiI	CCGCTC	2 cut(s)	1625, 2600
MflI	RGATCY	2 cut(s)	144, 1493
MhlI	GDGCHC	2 cut(s)	1809, 2692
MlsI	TGGCCA	2 cut(s)	572, 2335
MluCI	AATT	8 cut(s)	58, 402, 1144, 1585, 1970, 2067, 2312, 2649
MluNI	TGGCCA	2 cut(s)	572, 2335
MlyI	GAGTC	9 cut(s)	544, 614, 662, 679, 695, 1337, 1724, 2642, 2956
MmeI	TCCRAC	1 cut(s)	1362
Mox20I	TGGCCA	2 cut(s)	572, 2335
Mph1103I	ATGCAT	2 cut(s)	1561, 2569
MroXI	GAANNNNTTC	1 cut(s)	1713
MscI	TGGCCA	2 cut(s)	572, 2335
MseI	TTAA	8 cut(s)	324, 486, 509, 1059, 1214, 1604, 2117, 2481
MslI	CAYNNNNRTG	3 cut(s)	285, 1419, 2538
Msp20I	TGGCCA	2 cut(s)	572, 2335
MspA1I	CMGCKG	2 cut(s)	1105, 2752
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	3 cut(s)	657, 1111, 1304
MspR9I	CCNGG	2 cut(s)	1437, 2704
Mva1269I	GAATGC	2 cut(s)	115, 1430
MvaI	CCWGG	2 cut(s)	1437, 2704
MwoI	GCNNNNNNNGC	6 cut(s)	110, 622, 1111, 2696, 2777, 2786
NcoI	CCATGG	1 cut(s)	163
NlaIV	GGNNCC	1 cut(s)	1672
NmuCI	GTSAC	1 cut(s)	986
NsiI	ATGCAT	2 cut(s)	1561, 2569
NspI	RCATGY	4 cut(s)	1418, 1801, 1961, 2941
NspV	TTCGAA	1 cut(s)	1175
PaqCI	CACCTGC	1 cut(s)	1927
PciI	ACATGT	1 cut(s)	2937
PciSI	GCTCTTC	1 cut(s)	911
PcsI	WCGNNNNNNNCGW	2 cut(s)	417, 2269
PctI	GAATGC	2 cut(s)	115, 1430
PdmI	GAANNNNTTC	1 cut(s)	1713
PfeI	GAWTC	8 cut(s)	47, 818, 1034, 1703, 1858, 2135, 2180, 2391
PflFI	GACNNNGTC	1 cut(s)	416
PflMI	CCANNNNNTGG	2 cut(s)	2386, 2521
PkrI	GCNGC	8 cut(s)	379, 676, 970, 1627, 2232, 2470, 2596, 2599
Ple19I	CGATCG	1 cut(s)	1080
PleI	GAGTC	9 cut(s)	544, 613, 661, 679, 695, 1336, 1724, 2641, 2956
PpsI	GAGTC	9 cut(s)	544, 613, 661, 679, 695, 1336, 1724, 2641, 2956
PscI	ACATGT	1 cut(s)	2937
PshAI	GACNNNNGTC	1 cut(s)	1479
Psp124BI	GAGCTC	1 cut(s)	1809
Psp6I	CCWGG	2 cut(s)	1435, 2702
PspGI	CCWGG	2 cut(s)	1435, 2702
PspN4I	GGNNCC	1 cut(s)	1672
PspPI	GGNCC	1 cut(s)	659
PsrI	GAACNNNNNNTAC	2 cut(s)	1663, 1695
PstI	CTGCAG	1 cut(s)	100
PstNI	CAGNNNCTG	2 cut(s)	2777, 2948
PsuI	RGATCY	2 cut(s)	144, 1493
PsyI	GACNNNGTC	1 cut(s)	416
PvuI	CGATCG	1 cut(s)	1080
PvuII	CAGCTG	2 cut(s)	1105, 2752
RsaI	GTAC	5 cut(s)	25, 1882, 2424, 2628, 2859
RsaNI	GTAC	5 cut(s)	24, 1881, 2423, 2627, 2858
RseI	CAYNNNNRTG	3 cut(s)	285, 1419, 2538
SacI	GAGCTC	1 cut(s)	1809
SalI	GTCGAC	1 cut(s)	410
SapI	GCTCTTC	1 cut(s)	911
SaqAI	TTAA	8 cut(s)	324, 486, 509, 1059, 1214, 1604, 2117, 2481
SatI	GCNGC	8 cut(s)	378, 675, 969, 1626, 2231, 2469, 2595, 2598
Sau96I	GGNCC	1 cut(s)	659
ScaI	AGTACT	2 cut(s)	1882, 2859
SchI	GAGTC	9 cut(s)	544, 614, 662, 679, 695, 1337, 1724, 2642, 2956
ScrFI	CCNGG	2 cut(s)	1437, 2704
SduI	GDGCHC	2 cut(s)	1809, 2692
SfaNI	GCATC	7 cut(s)	91, 188, 1004, 1546, 2494, 2515, 2847
SfcI	CTRYAG	2 cut(s)	96, 2048
SfuI	TTCGAA	1 cut(s)	1175
SinI	GGWCC	1 cut(s)	659
SmiMI	CAYNNNNRTG	3 cut(s)	285, 1419, 2538
SmlI	CTYRAG	3 cut(s)	126, 199, 485
SmoI	CTYRAG	3 cut(s)	126, 199, 485
Sse9I	AATT	8 cut(s)	58, 402, 1144, 1585, 1970, 2067, 2312, 2649
SsiI	CCGC	8 cut(s)	523, 602, 940, 1418, 1625, 1638, 1795, 2598
SspMI	CTAG	6 cut(s)	719, 1581, 1842, 2235, 2913, 2991
SstI	GAGCTC	1 cut(s)	1809
StyD4I	CCNGG	2 cut(s)	1435, 2702
StyI	CCWWGG	2 cut(s)	163, 1352
TaaI	ACNGT	8 cut(s)	23, 542, 992, 1151, 1193, 1525, 2661, 2826
TaiI	ACGT	2 cut(s)	960, 2815
TaqI	TCGA	8 cut(s)	216, 411, 420, 1076, 1175, 1967, 2112, 2437
TasI	AATT	8 cut(s)	58, 402, 1144, 1585, 1970, 2067, 2312, 2649
TatI	WGTACW	4 cut(s)	1880, 2422, 2626, 2857
TauI	GCSGC	2 cut(s)	1628, 2600
TfiI	GAWTC	8 cut(s)	47, 818, 1034, 1703, 1858, 2135, 2180, 2391
Tru1I	TTAA	8 cut(s)	324, 486, 509, 1059, 1214, 1604, 2117, 2481
Tru9I	TTAA	8 cut(s)	324, 486, 509, 1059, 1214, 1604, 2117, 2481
TscAI	CASTG	5 cut(s)	547, 991, 2013, 2495, 2666
TseFI	GTSAC	1 cut(s)	986
TseI	GCWGC	6 cut(s)	377, 674, 968, 2230, 2468, 2594
Tsp45I	GTSAC	1 cut(s)	986
TspDTI	ATGAA	8 cut(s)	680, 738, 764, 1626, 1991, 2013, 2172, 2628
TspGWI	ACGGA	2 cut(s)	95, 1038
TspRI	CASTG	5 cut(s)	547, 991, 2013, 2495, 2666
Tth111I	GACNNNGTC	1 cut(s)	416
Van91I	CCANNNNNTGG	2 cut(s)	2386, 2521
Vha464I	CTTAAG	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	659
XapI	RAATTY	1 cut(s)	1585
XbaI	TCTAGA	3 cut(s)	1580, 1841, 2990
XceI	RCATGY	4 cut(s)	1418, 1801, 1961, 2941
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2682, 2797
XmiI	GTMKAC	2 cut(s)	411, 1473
XmnI	GAANNNNTTC	1 cut(s)	1713
XspI	CTAG	6 cut(s)	719, 1581, 1842, 2235, 2913, 2991
ZrmI	AGTACT	2 cut(s)	1882, 2859
Zsp2I	ATGCAT	2 cut(s)	1561, 2569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.