FvH4_5g21870

Belongs to the adaptor complexes medium subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012274
Physical Location & Seq
Reverse (-)
13217828 .. 13224987
7160 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21870.t1

Sequence Viewer

Length: 1317 bp
ATGCCGGTGGCCGCTTCCGCCGTCTACTTCTTGAACCTCCGCGGAGACGTTCTCATCAACCGTCTCTATCGTGATGACGTCGGGGGAAATATGGTGGATGCTTTCCGAATGCATATAATGCAAACAAAAGAGCTTGGTACATGTCCTGTGCGGCAGATTGGTGGATGCTCTTTCTTTTACATGAGAATCAGCAATGTTTACATCGTGATTGTAGTCAGCAGCAATGCGAATGTAGCTTGTGCCTTCAAGTTTGTTGTTGAGGCTGTTGCGCTGTTCAAATCTTATTTTGGTGGGGCTTTTGATGAAGATGCAATTCGTAACAATTTTGTTTTGATTTATGAGCTGTTGGACGAAATTATGGATTTTGGTTATCCCCAGAATCTTTCTCCAGAAATTTTAAAGCTTTACATCACTCAGGAAGGTGTGCGCTCCCCATTCTCTTCTAAGCCTACAGATAAACCTGTCCCTAATGCAACTCTACAAGTTACAGGTGCTGTTGGTTGGCGGAGAGAGGGCCTTGTTTATAAAAAGAATGAGGTCTTCTTGGATATTGTGGAAAGTGTAAACCTTTTGATGTCTTCCAAAGGTAGTGTTCTACGCTGTGATGTAACTGGGAAGATTCTCATGAAGTGCTTTCTTTCTGGAATGCCTGATTTAAAGTTAGGGTTGAATGATAAGATTGGCCTTGAGAAAGAGTCACAACTTAAATCTCGTCCTACCAAAAGTGGAAAAACTATTGAGCTCGATGATGTTACTTTCCATCAATGTGTAAATTTGACAAGGTTTAACTCAGAGAAGACAGTTAGTTTTGTGCCACCTGATGGTGAATTTGAATTGATGAAGTACCGTATAACTGAGGGTGTGAATCTTCCTTTCCGGGTATTGCCCACAATTAAGGAACTAGGTAGAACCCGCATTGAAGTAAATGTTAAGGTAAAGAGTGTTTTTGGTGCGAAGATGTTTGCGCTTGGGGTTGTTATCAAAATTCCTGTGCCAAAACAAACAGCAAAAACAAGTTTTCAAGTGACATCTGGTCGAGCGAAGTACAATGCAGCTATTGATTGCTTGGTTTGGAAGATAAGAAAGTTTCCGGGGCAAACTGAGCCAACTCTAAGTGCGGAAGTTGAGCTGATTTCCACGATGACAGAAAAGAAGTCTTGGACAAGACCACCAATTCAGATGGAGTTCCAGGTTCCAATGTTTACAGCATCTGGTTTACGTGTACGCTTTCTCAAGGTATGGGAGAAAAGTGGTTACAATACTGTTGAGTGGGTTCGCTATATCACCAAAGCAGGTTCGTATGAGATTAGGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04721 ko04961 ko05016 map04144 map04721 map04961 map05016
Pfam Domains
Protein Families
Adap_comp_sub

Protein Analysis

439

Amino Acids

49.35

Weight (kDa)

9.28

Isoelectric Point (pI)

33.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adap_comp_sub PF00928 167 - 438 1.7e-94 Adaptor complexes medium subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012274)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46630 AT5G46630
fragaria_vesca FvH4_5g21870 FvH4_5g21870
malus_domestica MD06G1032900.v1.1 MD16G1276300.v1.1
prunus_persica Prupe.5G038900_v2.0.a1
pyrus_communis pycom06g02720
rosa_chinensis RchiOBHm_Chr7g0209421
rosa_laevigata RLG00000003139
rosa_multiflora Rmu_ssc0000038.1_g000017
rosa_roxburghii Rroxscaffold_3G00249490
rosa_rugosa Rorug07G0112300 Rorug07G0112400
rosa_samantha Rh7AG246300 Rh7BG241300 Rh7CG261900 Rh7DG252600
rosa_wichuraiana Rw7G020840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 525
AatII GACGTC 1 cut(s) 81
Acc36I ACCTGC 1 cut(s) 1283
AccB7I CCANNNNNTGG 1 cut(s) 821
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 42
AciI CCGC 8 cut(s) 12, 18, 40, 42, 151, 505, 913, 1118
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 4 cut(s) 393, 772, 827, 984
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 4 cut(s) 139, 845, 1046, 1224
AfiI CCNNNNNNNGG 1 cut(s) 821
AflIII ACRYGT 2 cut(s) 140, 1219
AgsI TTSAA 7 cut(s) 34, 247, 277, 670, 833, 920, 1022
AhdI GACNNNNNGTC 1 cut(s) 1032
AjnI CCWGG 1 cut(s) 1188
AluBI AGCT 7 cut(s) 133, 236, 343, 403, 742, 1055, 1129
AluI AGCT 7 cut(s) 133, 236, 343, 403, 742, 1055, 1129
Alw21I GWGCWC 1 cut(s) 744
Alw26I GTCTC 2 cut(s) 39, 68
AlwNI CAGNNNCTG 2 cut(s) 494, 1211
AoxI GGCC 3 cut(s) 9, 514, 682
ApeKI GCWGC 2 cut(s) 219, 1052
ApoI RAATTY 4 cut(s) 393, 772, 827, 984
AspLEI GCGC 3 cut(s) 271, 429, 967
AspS9I GGNCC 1 cut(s) 514
AsuC2I CCSGG 2 cut(s) 878, 1092
AsuHPI GGTGA 2 cut(s) 836, 1276
BanII GRGCYC 1 cut(s) 744
BbsI GAAGAC 3 cut(s) 532, 570, 803
Bbv12I GWGCWC 1 cut(s) 744
BbvI GCAGC 2 cut(s) 231, 1064
BccI CCATC 3 cut(s) 768, 815, 1174
BceAI ACGGC 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 1190
BcnI CCSGG 2 cut(s) 878, 1092
BcoDI GTCTC 2 cut(s) 39, 68
BfaI CTAG 2 cut(s) 902, 1315
BfmI CTRYAG 1 cut(s) 450
BfuAI ACCTGC 1 cut(s) 1283
BisI GCNGC 4 cut(s) 12, 152, 220, 1053
BlsI GCNGC 4 cut(s) 13, 153, 221, 1054
Bme1390I CCNGG 3 cut(s) 878, 1092, 1190
BmeRI GACNNNNNGTC 1 cut(s) 1032
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 1 cut(s) 1194
BmrFI CCNGG 3 cut(s) 878, 1092, 1190
BmrI ACTGGG 1 cut(s) 621
BmsI GCATC 4 cut(s) 88, 155, 298, 1217
BmuI ACTGGG 1 cut(s) 621
BpiI GAAGAC 3 cut(s) 532, 570, 803
BplI GAGNNNNNCTC 2 cut(s) 36, 68
BpmI CTGGAG 1 cut(s) 372
BpuEI CTTGAG 2 cut(s) 707, 1217
BpuMI CCSGG 2 cut(s) 878, 1092
BsaAI YACGTR 1 cut(s) 1220
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 40, 1091
Bsc4I CCNNNNNNNGG 1 cut(s) 821
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 616
Bse3DI GCAATG 2 cut(s) 199, 229
BseBI CCWGG 1 cut(s) 1190
BseDI CCNNGG 2 cut(s) 40, 1091
BseGI GGATG 2 cut(s) 103, 170
BseLI CCNNNNNNNGG 1 cut(s) 821
BseMI GCAATG 2 cut(s) 199, 229
BseMII CTCAG 4 cut(s) 428, 804, 846, 1092
BseNI ACTGG 1 cut(s) 616
BseXI GCAGC 2 cut(s) 231, 1064
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 3 cut(s) 11, 516, 684
BsiHKAI GWGCWC 1 cut(s) 744
BsiSI CCGG 3 cut(s) 5, 877, 1091
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 1 cut(s) 821
BsmAI GTCTC 2 cut(s) 39, 68
BsmBI CGTCTC 2 cut(s) 39, 68
BsmFI GGGAC 1 cut(s) 449
BsmI GAATGC 2 cut(s) 114, 651
BsnI GGCC 3 cut(s) 11, 516, 684
Bsp1286I GDGCHC 1 cut(s) 744
BspACI CCGC 8 cut(s) 12, 18, 40, 42, 151, 505, 913, 1118
BspANI GGCC 3 cut(s) 11, 516, 684
BspCNI CTCAG 4 cut(s) 427, 803, 847, 1093
BspFNI CGCG 1 cut(s) 42
BspHI TCATGA 1 cut(s) 624
BspLI GGNNCC 1 cut(s) 1194
BspMI ACCTGC 1 cut(s) 1283
BsrDI GCAATG 2 cut(s) 199, 229
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 616
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 40, 1091
BssNI GRCGYC 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 1190
Bst4CI ACNGT 4 cut(s) 62, 802, 848, 1264
Bst6I CTCTTC 1 cut(s) 445
BstACI GRCGYC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 118
BstBAI YACGTR 1 cut(s) 1220
BstDEI CTNAG 6 cut(s) 414, 444, 790, 855, 1101, 1112
BstDSI CCRYGG 1 cut(s) 40
BstF5I GGATG 2 cut(s) 103, 170
BstFNI CGCG 1 cut(s) 42
BstHHI GCGC 3 cut(s) 271, 429, 967
BstMAI GTCTC 2 cut(s) 39, 68
BstMWI GCNNNNNNNGC 4 cut(s) 17, 118, 233, 1102
BstNI CCWGG 1 cut(s) 1190
BstNSI RCATGY 1 cut(s) 144
BstSCI CCNGG 3 cut(s) 876, 1090, 1188
BstSFI CTRYAG 1 cut(s) 450
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 2 cut(s) 231, 1064
BstV2I GAAGAC 3 cut(s) 532, 570, 803
BsuRI GGCC 3 cut(s) 11, 516, 684
BtgI CCRYGG 1 cut(s) 40
BtsCI GGATG 2 cut(s) 103, 170
BveI ACCTGC 1 cut(s) 1283
CaiI CAGNNNCTG 2 cut(s) 494, 1211
CciI TCATGA 1 cut(s) 624
CfoI GCGC 3 cut(s) 271, 429, 967
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 1 cut(s) 514
Cfr42I CCGCGG 1 cut(s) 43
Csp6I GTAC 4 cut(s) 138, 844, 1045, 1223
CviAII CATG 3 cut(s) 141, 181, 625
CviQI GTAC 4 cut(s) 138, 844, 1045, 1223
DdeI CTNAG 6 cut(s) 414, 444, 790, 855, 1101, 1112
DraI TTTAAA 2 cut(s) 399, 657
DriI GACNNNNNGTC 1 cut(s) 1032
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 445
Eam1105I GACNNNNNGTC 1 cut(s) 1032
EarI CTCTTC 1 cut(s) 445
EciI GGCGGA 2 cut(s) 7, 520
Ecl136II GAGCTC 1 cut(s) 742
Eco24I GRGCYC 1 cut(s) 744
Eco53kI GAGCTC 1 cut(s) 742
EcoICRI GAGCTC 1 cut(s) 742
EcoO109I RGGNCCY 1 cut(s) 514
EcoRII CCWGG 1 cut(s) 1188
EcoT22I ATGCAT 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 744
Esp3I CGTCTC 2 cut(s) 39, 68
FaeI CATG 3 cut(s) 144, 184, 628
FaqI GGGAC 1 cut(s) 449
FatI CATG 3 cut(s) 140, 180, 624
FauI CCCGC 1 cut(s) 920
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 4 cut(s) 12, 152, 220, 1053
FokI GGATG 2 cut(s) 110, 177
FriOI GRGCYC 1 cut(s) 744
Fsp4HI GCNGC 4 cut(s) 12, 152, 220, 1053
FspBI CTAG 2 cut(s) 902, 1315
GlaI GCGC 3 cut(s) 270, 428, 966
GluI GCNGC 4 cut(s) 12, 152, 220, 1053
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 3 cut(s) 11, 516, 684
HapII CCGG 3 cut(s) 5, 877, 1091
HhaI GCGC 3 cut(s) 271, 429, 967
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 3 cut(s) 144, 184, 628
Hin6I GCGC 3 cut(s) 269, 427, 965
HinP1I GCGC 3 cut(s) 269, 427, 965
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 5 cut(s) 186, 379, 619, 695, 865
HpaII CCGG 3 cut(s) 5, 877, 1091
HphI GGTGA 2 cut(s) 836, 1276
Hpy166II GTNNAC 6 cut(s) 25, 199, 565, 1203, 1217, 1223
Hpy188I TCNGA 3 cut(s) 107, 793, 1179
Hpy188III TCNNGA 7 cut(s) 31, 71, 205, 389, 416, 625, 642
Hpy8I GTNNAC 6 cut(s) 25, 199, 565, 1203, 1217, 1223
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 253, 413
HpyCH4III ACNGT 4 cut(s) 62, 802, 848, 1264
HpyCH4IV ACGT 3 cut(s) 48, 78, 1219
HpyCH4V TGCA 5 cut(s) 112, 121, 311, 473, 1052
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 118, 233, 1102
HpyF3I CTNAG 6 cut(s) 414, 444, 790, 855, 1101, 1112
HpySE526I ACGT 3 cut(s) 48, 78, 1219
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 3 cut(s) 144, 184, 628
HspAI GCGC 3 cut(s) 269, 427, 965
KspI CCGCGG 1 cut(s) 43
LmnI GCTCC 1 cut(s) 434
Lsp1109I GCAGC 2 cut(s) 231, 1064
LweI GCATC 4 cut(s) 88, 155, 298, 1217
MaeI CTAG 2 cut(s) 902, 1315
MaeII ACGT 3 cut(s) 48, 78, 1219
MaeIII GTNAC 7 cut(s) 317, 484, 607, 696, 751, 1024, 1253
MboII GAAGA 9 cut(s) 317, 432, 532, 570, 628, 808, 860, 967, 1087
MhlI GDGCHC 1 cut(s) 744
MlyI GAGTC 1 cut(s) 704
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 5 cut(s) 47, 253, 505, 529, 850
Mph1103I ATGCAT 1 cut(s) 114
MseI TTAA 6 cut(s) 398, 656, 705, 786, 894, 930
MslI CAYNNNNRTG 1 cut(s) 765
MspA1I CMGCKG 1 cut(s) 42
MspI CCGG 3 cut(s) 5, 877, 1091
MspR9I CCNGG 3 cut(s) 878, 1092, 1190
Mva1269I GAATGC 2 cut(s) 114, 651
MvaI CCWGG 1 cut(s) 1190
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 4 cut(s) 17, 118, 233, 1102
NciI CCSGG 2 cut(s) 878, 1092
NlaIII CATG 3 cut(s) 144, 184, 628
NlaIV GGNNCC 1 cut(s) 1194
NmuCI GTSAC 2 cut(s) 696, 1024
NsiI ATGCAT 1 cut(s) 114
NspI RCATGY 1 cut(s) 144
PagI TCATGA 1 cut(s) 624
PciI ACATGT 1 cut(s) 140
PctI GAATGC 2 cut(s) 114, 651
PfeI GAWTC 4 cut(s) 186, 379, 619, 865
PflMI CCANNNNNTGG 1 cut(s) 821
PkrI GCNGC 4 cut(s) 13, 153, 221, 1054
PleI GAGTC 1 cut(s) 703
PpsI GAGTC 1 cut(s) 703
Ppu21I YACGTR 1 cut(s) 1220
PscI ACATGT 1 cut(s) 140
PsiI TTATAA 1 cut(s) 525
Psp124BI GAGCTC 1 cut(s) 744
Psp6I CCWGG 1 cut(s) 1188
PspGI CCWGG 1 cut(s) 1188
PspN4I GGNNCC 1 cut(s) 1194
PspPI GGNCC 1 cut(s) 514
PstNI CAGNNNCTG 2 cut(s) 494, 1211
RsaI GTAC 4 cut(s) 139, 845, 1046, 1224
RsaNI GTAC 4 cut(s) 138, 844, 1045, 1223
RseI CAYNNNNRTG 1 cut(s) 765
SacI GAGCTC 1 cut(s) 744
SacII CCGCGG 1 cut(s) 43
SaqAI TTAA 6 cut(s) 398, 656, 705, 786, 894, 930
SatI GCNGC 4 cut(s) 12, 152, 220, 1053
Sau96I GGNCC 1 cut(s) 514
SchI GAGTC 1 cut(s) 704
ScrFI CCNGG 3 cut(s) 878, 1092, 1190
SduI GDGCHC 1 cut(s) 744
SfaNI GCATC 4 cut(s) 88, 155, 298, 1217
SfcI CTRYAG 1 cut(s) 450
Sfr303I CCGCGG 1 cut(s) 43
SgrBI CCGCGG 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 765
SmlI CTYRAG 2 cut(s) 686, 1232
SmoI CTYRAG 2 cut(s) 686, 1232
SsiI CCGC 8 cut(s) 12, 18, 40, 42, 151, 505, 913, 1118
SspMI CTAG 2 cut(s) 902, 1315
SstI GAGCTC 1 cut(s) 744
StyD4I CCNGG 3 cut(s) 876, 1090, 1188
TaaI ACNGT 4 cut(s) 62, 802, 848, 1264
TaiI ACGT 3 cut(s) 51, 81, 1222
TaqI TCGA 2 cut(s) 744, 1036
TatI WGTACW 1 cut(s) 1044
TauI GCSGC 2 cut(s) 14, 154
TfiI GAWTC 4 cut(s) 186, 379, 619, 865
Tru1I TTAA 6 cut(s) 398, 656, 705, 786, 894, 930
Tru9I TTAA 6 cut(s) 398, 656, 705, 786, 894, 930
TseFI GTSAC 2 cut(s) 696, 1024
TseI GCWGC 2 cut(s) 219, 1052
Tsp45I GTSAC 2 cut(s) 696, 1024
TspDTI ATGAA 3 cut(s) 318, 641, 854
Van91I CCANNNNNTGG 1 cut(s) 821
XapI RAATTY 4 cut(s) 393, 772, 827, 984
XceI RCATGY 1 cut(s) 144
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 2 cut(s) 902, 1315
ZraI GACGTC 1 cut(s) 79
Zsp2I ATGCAT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.