Rh7BG241300

Belongs to the adaptor complexes medium subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0012274
Physical Location & Seq
Reverse (-)
21289592 .. 21296679
7088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG241300.1

Sequence Viewer

Length: 1317 bp
ATGCCGGTGGCTGCTTCCGCCGTTTACTTCTTGAACCTCCGCGGAGATGTCCTCATCAACCGTCTCTACCGTGACGACGTCGGTGGAAATATGGTGGATGCTTTCCGAATTCATATAATGCAAACAAAAGAGCTTGGTACATGTCCTGTGCGGCAGATTGGTGGATGCTCTTTCTTTTACATGAGAATCAGCAATGTTTACATTGTGATTGTAGTCAGCAGCAATGCGAATGTAGCTTGTGCCTTCAAGTTTGTGGTTGAGGCCGTTGCGCTGTTCAAATCCTATTTTGGTGGGGCTTTTGATGAAGATGCAATTCGTAATAATTTTGTTTTGATTTATGAGCTGTTGGACGAAATTATGGATTTTGGTTATCCCCAGAATCTTTCTCCAGAAATTTTAAAGCTTTACATCACCCAGGAAGGAGTGCGTTCGCCATTCTCTTCTAAGCCTACAGATAAACCTGTCCCTAATGCAACTCTGCAAGTTACAGGTGCTGTCGGTTGGCGGAGAGAGGGCCTTGTTTATAAAAAGAATGAGGTTTTCTTGGATATTGTGGAAAGTGTAAATCTTTTGATGTCTTCCAAAGGTAGTGTTCTACGCTGCGATGTAACTGGGAAGATTCTTATGAAGTGCTTTCTCTCTGGAATGCCTGATTTGAAGTTAGGGTTGAATGATAAGATTGGCCTTGAGAAAGAGTCGCAAATTAAATCTCGTCCTACCAAAAGTGGAAAAACTATTGAGCTCGATGATGTTACTTTCCATCAATGTGTAAATTTGACGAGGTTTAACTCAGAGAAGACAGTTAGTTTTGTGCCACCTGATGGTGAATTCGAATTGATGAAGTACCGTATAACTGAGGGTGTGAATCTTCCGTTCCGAGTATTGCCCACAATTAAGGAACTAGGTAGAACTCGCATTGAAGTCAATGTTAAGGTAAAGAGTGTTTTTGGTGCCAAGATGTTTGCGCTTGGGGTTGTCATCAAAATTCCTGTGCCAAAACAAACGGCAAAAACAAGTTTTCAAGTGACCTCTGGTCGAGCGAAGTACAATGCTGCTATTGATTGCTTGGTTTGGAAGATAAGAAAGTTTCCGGGACAAACTGAGCCAACTTTGAGTGCAGAAGTTGAGCTGATTTCCACGATGACAGAAAAGAAGTCTTGGACAAGACCGCCAATTCAGATGGAGTTCCAGGTTCCAATGTTTACAGCATCTGGTTTACGTGTACGTTTTCTCAAGGTATGGGAGAAAAGTGGTTACAATACTGTTGAGTGGGTTCGCTATATCACCAAAGCTGGTTCATATGAGATTAGGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04721 ko04961 ko05016 map04144 map04721 map04961 map05016
Pfam Domains
Protein Families
Adap_comp_sub

Protein Analysis

438

Amino Acids

49.33

Weight (kDa)

9.28

Isoelectric Point (pI)

32.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adap_comp_sub PF00928 167 - 438 1.7e-94 Adaptor complexes medium subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012274)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46630 AT5G46630
fragaria_vesca FvH4_5g21870 FvH4_5g21870
malus_domestica MD06G1032900.v1.1 MD16G1276300.v1.1
prunus_persica Prupe.5G038900_v2.0.a1
pyrus_communis pycom06g02720
rosa_chinensis RchiOBHm_Chr7g0209421
rosa_laevigata RLG00000003139
rosa_multiflora Rmu_ssc0000038.1_g000017
rosa_roxburghii Rroxscaffold_3G00249490
rosa_rugosa Rorug07G0112300 Rorug07G0112400
rosa_samantha Rh7AG246300 Rh7BG241300 Rh7CG261900 Rh7DG252600
rosa_wichuraiana Rw7G020840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 525
AatII GACGTC 1 cut(s) 81
AccB1I GGYRCC 1 cut(s) 950
AccB7I CCANNNNNTGG 1 cut(s) 821
AccII CGCG 1 cut(s) 42
AciI CCGC 6 cut(s) 18, 40, 42, 151, 505, 1169
AcsI RAATTY 5 cut(s) 108, 393, 772, 827, 984
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 4 cut(s) 139, 845, 1046, 1224
AfiI CCNNNNNNNGG 1 cut(s) 821
AflIII ACRYGT 2 cut(s) 140, 1219
AgsI TTSAA 7 cut(s) 34, 247, 277, 658, 670, 920, 1022
AhdI GACNNNNNGTC 1 cut(s) 1032
AjnI CCWGG 2 cut(s) 414, 1188
AluBI AGCT 7 cut(s) 133, 236, 343, 403, 742, 1129, 1292
AluI AGCT 7 cut(s) 133, 236, 343, 403, 742, 1129, 1292
Alw21I GWGCWC 1 cut(s) 744
Alw26I GTCTC 1 cut(s) 68
AlwNI CAGNNNCTG 2 cut(s) 494, 1211
AoxI GGCC 3 cut(s) 261, 514, 682
ApeKI GCWGC 4 cut(s) 11, 219, 600, 1052
ApoI RAATTY 5 cut(s) 108, 393, 772, 827, 984
AspLEI GCGC 2 cut(s) 271, 967
AspS9I GGNCC 1 cut(s) 514
AsuC2I CCSGG 1 cut(s) 1092
AsuHPI GGTGA 3 cut(s) 403, 836, 1276
AsuII TTCGAA 1 cut(s) 831
BanI GGYRCC 1 cut(s) 950
BanII GRGCYC 1 cut(s) 744
BbsI GAAGAC 2 cut(s) 570, 803
Bbv12I GWGCWC 1 cut(s) 744
BbvI GCAGC 3 cut(s) 231, 587, 1039
BccI CCATC 3 cut(s) 768, 815, 1174
BceAI ACGGC 3 cut(s) 5, 248, 1020
BciT130I CCWGG 2 cut(s) 416, 1190
BcnI CCSGG 1 cut(s) 1092
BcoDI GTCTC 1 cut(s) 68
BfaI CTAG 2 cut(s) 902, 1315
BfmI CTRYAG 1 cut(s) 450
BisI GCNGC 5 cut(s) 12, 152, 220, 601, 1053
BlsI GCNGC 5 cut(s) 13, 153, 221, 602, 1054
Bme1390I CCNGG 3 cut(s) 416, 1092, 1190
BmeRI GACNNNNNGTC 1 cut(s) 1032
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 2 cut(s) 952, 1194
BmrFI CCNGG 3 cut(s) 416, 1092, 1190
BmrI ACTGGG 1 cut(s) 621
BmsI GCATC 4 cut(s) 88, 155, 298, 1217
BmuI ACTGGG 1 cut(s) 621
BpiI GAAGAC 2 cut(s) 570, 803
BplI GAGNNNNNCTC 2 cut(s) 36, 68
BpmI CTGGAG 1 cut(s) 372
Bpu14I TTCGAA 1 cut(s) 831
BpuEI CTTGAG 2 cut(s) 707, 1217
BpuMI CCSGG 1 cut(s) 1092
BsaAI YACGTR 1 cut(s) 1220
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 40, 414
Bsc4I CCNNNNNNNGG 1 cut(s) 821
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 616
Bse3DI GCAATG 2 cut(s) 199, 229
BseBI CCWGG 2 cut(s) 416, 1190
BseDI CCNNGG 2 cut(s) 40, 414
BseGI GGATG 2 cut(s) 103, 170
BseLI CCNNNNNNNGG 1 cut(s) 821
BseMI GCAATG 2 cut(s) 199, 229
BseMII CTCAG 3 cut(s) 804, 846, 1092
BseNI ACTGG 1 cut(s) 616
BseXI GCAGC 3 cut(s) 231, 587, 1039
BsgI GTGCAG 1 cut(s) 1137
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 3 cut(s) 263, 516, 684
BshNI GGYRCC 1 cut(s) 950
BsiHKAI GWGCWC 1 cut(s) 744
BsiSI CCGG 2 cut(s) 5, 1091
BslFI GGGAC 2 cut(s) 449, 1107
BslI CCNNNNNNNGG 1 cut(s) 821
BsmAI GTCTC 1 cut(s) 68
BsmBI CGTCTC 1 cut(s) 68
BsmFI GGGAC 2 cut(s) 449, 1107
BsmI GAATGC 1 cut(s) 651
BsnI GGCC 3 cut(s) 263, 516, 684
Bsp119I TTCGAA 1 cut(s) 831
Bsp1286I GDGCHC 1 cut(s) 744
BspACI CCGC 6 cut(s) 18, 40, 42, 151, 505, 1169
BspANI GGCC 3 cut(s) 263, 516, 684
BspCNI CTCAG 3 cut(s) 803, 847, 1093
BspFNI CGCG 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 952, 1194
BspT104I TTCGAA 1 cut(s) 831
BspT107I GGYRCC 1 cut(s) 950
BsrDI GCAATG 2 cut(s) 199, 229
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 616
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 40, 414
BssNI GRCGYC 1 cut(s) 78
Bst2UI CCWGG 2 cut(s) 416, 1190
Bst4CI ACNGT 5 cut(s) 62, 71, 802, 848, 1264
Bst6I CTCTTC 1 cut(s) 445
BstACI GRCGYC 1 cut(s) 78
BstBAI YACGTR 1 cut(s) 1220
BstBI TTCGAA 1 cut(s) 831
BstDEI CTNAG 4 cut(s) 444, 790, 855, 1101
BstDSI CCRYGG 1 cut(s) 40
BstF5I GGATG 2 cut(s) 103, 170
BstFNI CGCG 1 cut(s) 42
BstHHI GCGC 2 cut(s) 271, 967
BstMAI GTCTC 1 cut(s) 68
BstMWI GCNNNNNNNGC 2 cut(s) 17, 233
BstNI CCWGG 2 cut(s) 416, 1190
BstNSI RCATGY 1 cut(s) 144
BstSCI CCNGG 3 cut(s) 414, 1090, 1188
BstSFI CTRYAG 1 cut(s) 450
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 3 cut(s) 231, 587, 1039
BstV2I GAAGAC 2 cut(s) 570, 803
BsuRI GGCC 3 cut(s) 263, 516, 684
BtgI CCRYGG 1 cut(s) 40
BtgZI GCGATG 1 cut(s) 618
BtsCI GGATG 2 cut(s) 103, 170
CaiI CAGNNNCTG 2 cut(s) 494, 1211
CfoI GCGC 2 cut(s) 271, 967
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 1 cut(s) 514
Cfr42I CCGCGG 1 cut(s) 43
Csp6I GTAC 4 cut(s) 138, 844, 1045, 1223
CviAII CATG 2 cut(s) 141, 181
CviQI GTAC 4 cut(s) 138, 844, 1045, 1223
DdeI CTNAG 4 cut(s) 444, 790, 855, 1101
DraI TTTAAA 1 cut(s) 399
DriI GACNNNNNGTC 1 cut(s) 1032
Eam1104I CTCTTC 1 cut(s) 445
Eam1105I GACNNNNNGTC 1 cut(s) 1032
EarI CTCTTC 1 cut(s) 445
EciI GGCGGA 2 cut(s) 7, 520
Ecl136II GAGCTC 1 cut(s) 742
Eco24I GRGCYC 1 cut(s) 744
Eco53kI GAGCTC 1 cut(s) 742
EcoICRI GAGCTC 1 cut(s) 742
EcoO109I RGGNCCY 1 cut(s) 514
EcoRI GAATTC 2 cut(s) 108, 827
EcoRII CCWGG 2 cut(s) 414, 1188
EcoT38I GRGCYC 1 cut(s) 744
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 2 cut(s) 144, 184
FaqI GGGAC 2 cut(s) 449, 1107
FatI CATG 2 cut(s) 140, 180
FauNDI CATATG 1 cut(s) 1300
Fnu4HI GCNGC 5 cut(s) 12, 152, 220, 601, 1053
FokI GGATG 2 cut(s) 110, 177
FriOI GRGCYC 1 cut(s) 744
Fsp4HI GCNGC 5 cut(s) 12, 152, 220, 601, 1053
FspBI CTAG 2 cut(s) 902, 1315
GlaI GCGC 2 cut(s) 270, 966
GluI GCNGC 5 cut(s) 12, 152, 220, 601, 1053
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 3 cut(s) 263, 516, 684
HapII CCGG 2 cut(s) 5, 1091
HhaI GCGC 2 cut(s) 271, 967
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 144, 184
Hin6I GCGC 2 cut(s) 269, 965
HinP1I GCGC 2 cut(s) 269, 965
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 5 cut(s) 186, 379, 619, 695, 865
HpaII CCGG 2 cut(s) 5, 1091
HphI GGTGA 3 cut(s) 403, 836, 1276
Hpy166II GTNNAC 5 cut(s) 25, 199, 1203, 1217, 1223
Hpy188I TCNGA 4 cut(s) 107, 793, 878, 1179
Hpy188III TCNNGA 3 cut(s) 31, 389, 642
Hpy8I GTNNAC 5 cut(s) 25, 199, 1203, 1217, 1223
Hpy99I CGWCG 2 cut(s) 80, 83
HpyAV CCTTC 2 cut(s) 253, 413
HpyCH4III ACNGT 5 cut(s) 62, 71, 802, 848, 1264
HpyCH4IV ACGT 3 cut(s) 78, 1219, 1225
HpyCH4V TGCA 5 cut(s) 121, 311, 473, 481, 1118
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 233
HpyF3I CTNAG 4 cut(s) 444, 790, 855, 1101
HpySE526I ACGT 3 cut(s) 78, 1219, 1225
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 144, 184
HspAI GCGC 2 cut(s) 269, 965
KspI CCGCGG 1 cut(s) 43
Lsp1109I GCAGC 3 cut(s) 231, 587, 1039
LweI GCATC 4 cut(s) 88, 155, 298, 1217
MaeI CTAG 2 cut(s) 902, 1315
MaeII ACGT 3 cut(s) 78, 1219, 1225
MaeIII GTNAC 6 cut(s) 71, 484, 607, 751, 1024, 1253
MboII GAAGA 7 cut(s) 317, 432, 570, 628, 808, 860, 1087
MhlI GDGCHC 1 cut(s) 744
MlyI GAGTC 1 cut(s) 704
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 8 cut(s) 47, 62, 253, 505, 529, 774, 850, 1039
MseI TTAA 5 cut(s) 398, 705, 786, 894, 930
MslI CAYNNNNRTG 1 cut(s) 765
MspA1I CMGCKG 1 cut(s) 42
MspI CCGG 2 cut(s) 5, 1091
MspR9I CCNGG 3 cut(s) 416, 1092, 1190
Mva1269I GAATGC 1 cut(s) 651
MvaI CCWGG 2 cut(s) 416, 1190
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 2 cut(s) 17, 233
NciI CCSGG 1 cut(s) 1092
NdeI CATATG 1 cut(s) 1300
NlaIII CATG 2 cut(s) 144, 184
NlaIV GGNNCC 2 cut(s) 952, 1194
NmuCI GTSAC 2 cut(s) 71, 1024
NspI RCATGY 1 cut(s) 144
NspV TTCGAA 1 cut(s) 831
PciI ACATGT 1 cut(s) 140
PctI GAATGC 1 cut(s) 651
PfeI GAWTC 4 cut(s) 186, 379, 619, 865
PflFI GACNNNGTC 1 cut(s) 77
PflMI CCANNNNNTGG 1 cut(s) 821
PfoI TCCNGGA 1 cut(s) 1090
PkrI GCNGC 5 cut(s) 13, 153, 221, 602, 1054
PleI GAGTC 1 cut(s) 703
PpsI GAGTC 1 cut(s) 703
Ppu21I YACGTR 1 cut(s) 1220
PscI ACATGT 1 cut(s) 140
PsiI TTATAA 1 cut(s) 525
Psp124BI GAGCTC 1 cut(s) 744
Psp6I CCWGG 2 cut(s) 414, 1188
PspGI CCWGG 2 cut(s) 414, 1188
PspN4I GGNNCC 2 cut(s) 952, 1194
PspPI GGNCC 1 cut(s) 514
PstNI CAGNNNCTG 2 cut(s) 494, 1211
PsyI GACNNNGTC 1 cut(s) 77
RsaI GTAC 4 cut(s) 139, 845, 1046, 1224
RsaNI GTAC 4 cut(s) 138, 844, 1045, 1223
RseI CAYNNNNRTG 1 cut(s) 765
SacI GAGCTC 1 cut(s) 744
SacII CCGCGG 1 cut(s) 43
SaqAI TTAA 5 cut(s) 398, 705, 786, 894, 930
SatI GCNGC 5 cut(s) 12, 152, 220, 601, 1053
Sau96I GGNCC 1 cut(s) 514
SchI GAGTC 1 cut(s) 704
ScrFI CCNGG 3 cut(s) 416, 1092, 1190
SduI GDGCHC 1 cut(s) 744
SfaNI GCATC 4 cut(s) 88, 155, 298, 1217
SfcI CTRYAG 1 cut(s) 450
Sfr303I CCGCGG 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 831
SgrBI CCGCGG 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 765
SmlI CTYRAG 2 cut(s) 686, 1232
SmoI CTYRAG 2 cut(s) 686, 1232
SsiI CCGC 6 cut(s) 18, 40, 42, 151, 505, 1169
SspMI CTAG 2 cut(s) 902, 1315
SstI GAGCTC 1 cut(s) 744
StyD4I CCNGG 3 cut(s) 414, 1090, 1188
TaaI ACNGT 5 cut(s) 62, 71, 802, 848, 1264
TaiI ACGT 3 cut(s) 81, 1222, 1228
TaqI TCGA 3 cut(s) 744, 831, 1036
TatI WGTACW 1 cut(s) 1044
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 4 cut(s) 186, 379, 619, 865
Tru1I TTAA 5 cut(s) 398, 705, 786, 894, 930
Tru9I TTAA 5 cut(s) 398, 705, 786, 894, 930
TseFI GTSAC 2 cut(s) 71, 1024
TseI GCWGC 4 cut(s) 11, 219, 600, 1052
Tsp45I GTSAC 2 cut(s) 71, 1024
TspDTI ATGAA 5 cut(s) 101, 318, 641, 854, 1287
TspGWI ACGGA 1 cut(s) 861
Tth111I GACNNNGTC 1 cut(s) 77
Van91I CCANNNNNTGG 1 cut(s) 821
XapI RAATTY 5 cut(s) 108, 393, 772, 827, 984
XceI RCATGY 1 cut(s) 144
XspI CTAG 2 cut(s) 902, 1315
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.