pycom06g02720

Belongs to the adaptor complexes medium subunit family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
3266225 .. 3273171
6947 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g02720.11

Sequence Viewer

Length: 1317 bp
ATGCCGGTGGCTGCTTCCGCCATCTACTTCTTGAACCTCCGCGGTGATGTTCTCATCAACCGTCTCTATCGTGACGATGTTGGCGGAAATATGGTGGATGCTTTCCGCACACATATTATGCAAACAAAAGAACTCGGAACATGTCCTGTGCGGCAGATTGGTGGATGCTCTTTCTTTTACATGAGAATCAGCAACGTTTACATTGTGATTGTTGTCAGCAGCAATGCCAATGTAGCCTGTGCATTCAAGTTTGTTGTTGAGGCAGTTGCACTGTTCAAATCTTATTTTGGTGGGGCTTTTGACGAAGATGCAATTCGTAATAATTTTGTTCTGATTTATGAGCTATTGGATGAAATTATGGATTTTGGTTACCCACAGAATCTTTCTCCAGAAATTTTGAAGCTTTACATCACCCAGGAAGGAGTGCGCTCTCCATTCTCTTCTAAGCCTACAGATAAACCTGTCCCTAATGCAACACTTCAAGTTACAGGTGCTGTTGGTTGGCGTAGAGAGGGCCTTGTTTATAAAAAGAATGAGGTCTTCTTGGATATTGTGGAAAGTGTAAATCTTCTTATGTCTTCCAAAGGTAGTGTTCTGCGCTGTGATGTAACCGGGAAGGTTCTAATGAAGTGCTTTCTCTCTGGAATGCCCGATTTGAAGTTGGGCTTGAATGATAAAATTGGCCTTGAGAAAGAGTCGCAACTTAAATCCCGTCCCACCAAAAGTGGGAAAACTATCGAGCTTGATGATGTTACTTTCCATCAATGTGTAAACTTGACGAGATTTAACTCAGAGAAGACAGTTAGTTTTGTGCCACCTGATGGTGAATTTGAATTGATGAAGTATCGTATTACTGAGGGTGTGAATCTTCCATTCCGAGTATTGCCTACAATTAAAGAACTCGGCAGAACTCGCATTGAAGTAAATGTTAAGGTCAAGAGCGTTTTTGGTGCAAAAATGTTTGCTCTTGGGGTTGTCATCAAAATTCCTGTGCCAAAACAAACAGCAAAGACAAGTTTTCAAGTGACATCTGGTCGAGCAAAATATAATGCTGCTATTGATTGCTTGGTCTGGAAGATAAGGAAATTTCCAGGACAAACAGAGCCAACTTTGAGTGCAGAAGTTGAGCTGATTTCCACGATGACAGAAAAGAAATCTTGGACAAGACCACCAATTCAGATGGAGTTCCAGGTTCCAATGTTTACAGCGTCTGGTTTACGTGTGCGCTTTCTCAAGGTATGGGAAAAGAGTGGATACAACACTGTTGAGTGGGTTCGCTATATCACGAAAGCTGGTTCATACGAGATTAGGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

439

Amino Acids

49.32

Weight (kDa)

9.28

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012274)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 525
AccB7I CCANNNNNTGG 1 cut(s) 821
AccII CGCG 1 cut(s) 42
AciI CCGC 6 cut(s) 18, 40, 42, 84, 106, 151
AclI AACGTT 1 cut(s) 195
AcsI RAATTY 4 cut(s) 393, 827, 984, 1085
AfiI CCNNNNNNNGG 2 cut(s) 726, 821
AflIII ACRYGT 2 cut(s) 140, 1219
AhdI GACNNNNNGTC 1 cut(s) 1032
AjnI CCWGG 3 cut(s) 414, 1090, 1188
AluBI AGCT 5 cut(s) 343, 403, 742, 1129, 1292
AluI AGCT 5 cut(s) 343, 403, 742, 1129, 1292
Alw26I GTCTC 1 cut(s) 68
AlwNI CAGNNNCTG 2 cut(s) 494, 1211
AoxI GGCC 2 cut(s) 514, 682
ApeKI GCWGC 3 cut(s) 11, 219, 1052
ApoI RAATTY 4 cut(s) 393, 827, 984, 1085
AspLEI GCGC 3 cut(s) 429, 600, 1227
AspS9I GGNCC 1 cut(s) 514
AsuC2I CCSGG 1 cut(s) 613
AsuHPI GGTGA 3 cut(s) 56, 403, 836
BbsI GAAGAC 3 cut(s) 532, 570, 803
BbvI GCAGC 2 cut(s) 231, 1039
BccI CCATC 4 cut(s) 29, 768, 815, 1174
BciT130I CCWGG 3 cut(s) 416, 1092, 1190
BciVI GTATCC 1 cut(s) 1247
BcnI CCSGG 1 cut(s) 613
BcoDI GTCTC 1 cut(s) 68
BfaI CTAG 1 cut(s) 1315
BfmI CTRYAG 1 cut(s) 450
BfuI GTATCC 1 cut(s) 1247
BisI GCNGC 4 cut(s) 12, 152, 220, 1053
BlsI GCNGC 4 cut(s) 13, 153, 221, 1054
Bme1390I CCNGG 4 cut(s) 416, 613, 1092, 1190
BmeRI GACNNNNNGTC 1 cut(s) 1032
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 1 cut(s) 1194
BmrFI CCNGG 4 cut(s) 416, 613, 1092, 1190
BmsI GCATC 3 cut(s) 88, 155, 298
BpiI GAAGAC 3 cut(s) 532, 570, 803
BpmI CTGGAG 1 cut(s) 372
BpuEI CTTGAG 2 cut(s) 707, 1217
BpuMI CCSGG 1 cut(s) 613
BsaAI YACGTR 1 cut(s) 1220
BsaJI CCNNGG 2 cut(s) 40, 414
Bsc4I CCNNNNNNNGG 2 cut(s) 726, 821
Bse118I RCCGGY 1 cut(s) 4
Bse3DI GCAATG 1 cut(s) 229
BseBI CCWGG 3 cut(s) 416, 1092, 1190
BseDI CCNNGG 2 cut(s) 40, 414
BseGI GGATG 3 cut(s) 103, 170, 355
BseLI CCNNNNNNNGG 2 cut(s) 726, 821
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 2 cut(s) 804, 846
BseXI GCAGC 2 cut(s) 231, 1039
BsgI GTGCAG 1 cut(s) 1137
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 2 cut(s) 516, 684
BsiSI CCGG 2 cut(s) 5, 612
BslFI GGGAC 2 cut(s) 449, 699
BslI CCNNNNNNNGG 2 cut(s) 726, 821
BsmAI GTCTC 1 cut(s) 68
BsmBI CGTCTC 1 cut(s) 68
BsmFI GGGAC 2 cut(s) 449, 699
BsmI GAATGC 2 cut(s) 242, 651
BsnI GGCC 2 cut(s) 516, 684
BspACI CCGC 6 cut(s) 18, 40, 42, 84, 106, 151
BspANI GGCC 2 cut(s) 516, 684
BspCNI CTCAG 2 cut(s) 803, 847
BspFNI CGCG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 1194
BsrDI GCAATG 1 cut(s) 229
BsrFI RCCGGY 1 cut(s) 4
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 40, 414
Bst2UI CCWGG 3 cut(s) 416, 1092, 1190
Bst4CI ACNGT 4 cut(s) 62, 273, 802, 1264
Bst6I CTCTTC 1 cut(s) 445
BstBAI YACGTR 1 cut(s) 1220
BstDEI CTNAG 3 cut(s) 444, 790, 855
BstDSI CCRYGG 1 cut(s) 40
BstEII GGTNACC 1 cut(s) 368
BstF5I GGATG 3 cut(s) 103, 170, 355
BstFNI CGCG 1 cut(s) 42
BstHHI GCGC 3 cut(s) 429, 600, 1227
BstMAI GTCTC 1 cut(s) 68
BstMWI GCNNNNNNNGC 3 cut(s) 17, 233, 912
BstNI CCWGG 3 cut(s) 416, 1092, 1190
BstNSI RCATGY 1 cut(s) 144
BstPI GGTNACC 1 cut(s) 368
BstSCI CCNGG 4 cut(s) 414, 611, 1090, 1188
BstSFI CTRYAG 1 cut(s) 450
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 2 cut(s) 231, 1039
BstV2I GAAGAC 3 cut(s) 532, 570, 803
BsuI GTATCC 1 cut(s) 1247
BsuRI GGCC 2 cut(s) 516, 684
BtgI CCRYGG 1 cut(s) 40
BtsCI GGATG 3 cut(s) 103, 170, 355
BtsIMutI CAGTG 2 cut(s) 269, 1260
CaiI CAGNNNCTG 2 cut(s) 494, 1211
CfoI GCGC 3 cut(s) 429, 600, 1227
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 1 cut(s) 514
Cfr42I CCGCGG 1 cut(s) 43
CseI GACGC 1 cut(s) 1197
CviAII CATG 2 cut(s) 141, 181
DdeI CTNAG 3 cut(s) 444, 790, 855
DriI GACNNNNNGTC 1 cut(s) 1032
Eam1104I CTCTTC 1 cut(s) 445
Eam1105I GACNNNNNGTC 1 cut(s) 1032
EarI CTCTTC 1 cut(s) 445
EciI GGCGGA 2 cut(s) 7, 99
Eco91I GGTNACC 1 cut(s) 368
EcoO109I RGGNCCY 1 cut(s) 514
EcoO65I GGTNACC 1 cut(s) 368
EcoRII CCWGG 3 cut(s) 414, 1090, 1188
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 2 cut(s) 144, 184
FalI AAGNNNNNCTT 2 cut(s) 650, 682
FaqI GGGAC 2 cut(s) 449, 699
FatI CATG 2 cut(s) 140, 180
Fnu4HI GCNGC 4 cut(s) 12, 152, 220, 1053
FokI GGATG 3 cut(s) 110, 177, 362
Fsp4HI GCNGC 4 cut(s) 12, 152, 220, 1053
FspBI CTAG 1 cut(s) 1315
GlaI GCGC 3 cut(s) 428, 599, 1226
GluI GCNGC 4 cut(s) 12, 152, 220, 1053
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 2 cut(s) 516, 684
HapII CCGG 2 cut(s) 5, 612
HgaI GACGC 1 cut(s) 1197
HhaI GCGC 3 cut(s) 429, 600, 1227
Hin1II CATG 2 cut(s) 144, 184
Hin6I GCGC 3 cut(s) 427, 598, 1225
HinP1I GCGC 3 cut(s) 427, 598, 1225
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 4 cut(s) 186, 379, 695, 865
HpaII CCGG 2 cut(s) 5, 612
HphI GGTGA 3 cut(s) 56, 403, 836
Hpy166II GTNNAC 4 cut(s) 199, 772, 1203, 1217
Hpy188I TCNGA 5 cut(s) 137, 333, 793, 878, 1179
Hpy188III TCNNGA 7 cut(s) 31, 71, 389, 642, 937, 1072, 1285
Hpy8I GTNNAC 4 cut(s) 199, 772, 1203, 1217
HpyAV CCTTC 2 cut(s) 413, 610
HpyCH4III ACNGT 4 cut(s) 62, 273, 802, 1264
HpyCH4IV ACGT 2 cut(s) 195, 1219
HpyCH4V TGCA 7 cut(s) 121, 242, 269, 311, 473, 953, 1118
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 233, 912
HpyF3I CTNAG 3 cut(s) 444, 790, 855
HpySE526I ACGT 2 cut(s) 195, 1219
Hsp92II CATG 2 cut(s) 144, 184
HspAI GCGC 3 cut(s) 427, 598, 1225
KspI CCGCGG 1 cut(s) 43
Lsp1109I GCAGC 2 cut(s) 231, 1039
LweI GCATC 3 cut(s) 88, 155, 298
MaeI CTAG 1 cut(s) 1315
MaeII ACGT 2 cut(s) 195, 1219
MaeIII GTNAC 6 cut(s) 71, 368, 484, 607, 751, 1024
MboII GAAGA 8 cut(s) 317, 432, 532, 560, 570, 808, 860, 1087
MlyI GAGTC 1 cut(s) 704
MnlI CCTC 5 cut(s) 47, 253, 505, 529, 850
MseI TTAA 4 cut(s) 705, 786, 894, 930
MslI CAYNNNNRTG 1 cut(s) 765
MspA1I CMGCKG 1 cut(s) 42
MspI CCGG 2 cut(s) 5, 612
MspR9I CCNGG 4 cut(s) 416, 613, 1092, 1190
Mva1269I GAATGC 2 cut(s) 242, 651
MvaI CCWGG 3 cut(s) 416, 1092, 1190
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 3 cut(s) 17, 233, 912
NciI CCSGG 1 cut(s) 613
NlaIII CATG 2 cut(s) 144, 184
NlaIV GGNNCC 1 cut(s) 1194
NmeAIII GCCGAG 1 cut(s) 882
NmuCI GTSAC 2 cut(s) 71, 1024
NspI RCATGY 1 cut(s) 144
PciI ACATGT 1 cut(s) 140
PctI GAATGC 2 cut(s) 242, 651
PfeI GAWTC 3 cut(s) 186, 379, 865
PflMI CCANNNNNTGG 1 cut(s) 821
PfoI TCCNGGA 1 cut(s) 1090
PkrI GCNGC 4 cut(s) 13, 153, 221, 1054
PleI GAGTC 1 cut(s) 703
PpsI GAGTC 1 cut(s) 703
Ppu21I YACGTR 1 cut(s) 1220
PscI ACATGT 1 cut(s) 140
PsiI TTATAA 1 cut(s) 525
Psp1406I AACGTT 1 cut(s) 195
Psp6I CCWGG 3 cut(s) 414, 1090, 1188
PspEI GGTNACC 1 cut(s) 368
PspGI CCWGG 3 cut(s) 414, 1090, 1188
PspN4I GGNNCC 1 cut(s) 1194
PspPI GGNCC 1 cut(s) 514
PstNI CAGNNNCTG 2 cut(s) 494, 1211
RseI CAYNNNNRTG 1 cut(s) 765
SacII CCGCGG 1 cut(s) 43
SaqAI TTAA 4 cut(s) 705, 786, 894, 930
SatI GCNGC 4 cut(s) 12, 152, 220, 1053
Sau96I GGNCC 1 cut(s) 514
SchI GAGTC 1 cut(s) 704
ScrFI CCNGG 4 cut(s) 416, 613, 1092, 1190
SfaNI GCATC 3 cut(s) 88, 155, 298
SfcI CTRYAG 1 cut(s) 450
Sfr303I CCGCGG 1 cut(s) 43
SgrBI CCGCGG 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 765
SmlI CTYRAG 2 cut(s) 686, 1232
SmoI CTYRAG 2 cut(s) 686, 1232
SsiI CCGC 6 cut(s) 18, 40, 42, 84, 106, 151
SspMI CTAG 1 cut(s) 1315
StyD4I CCNGG 4 cut(s) 414, 611, 1090, 1188
TaaI ACNGT 4 cut(s) 62, 273, 802, 1264
TaiI ACGT 2 cut(s) 198, 1222
TaqI TCGA 2 cut(s) 738, 1036
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 3 cut(s) 186, 379, 865
Tru1I TTAA 4 cut(s) 705, 786, 894, 930
Tru9I TTAA 4 cut(s) 705, 786, 894, 930
TscAI CASTG 2 cut(s) 276, 1267
TseFI GTSAC 2 cut(s) 71, 1024
TseI GCWGC 3 cut(s) 11, 219, 1052
Tsp45I GTSAC 2 cut(s) 71, 1024
TspDTI ATGAA 4 cut(s) 366, 641, 854, 1287
TspRI CASTG 2 cut(s) 276, 1267
Van91I CCANNNNNTGG 1 cut(s) 821
XapI RAATTY 4 cut(s) 393, 827, 984, 1085
XceI RCATGY 1 cut(s) 144
XspI CTAG 1 cut(s) 1315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.