Rorug07G0112400

Belongs to the adaptor complexes medium subunit family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
8793409 .. 8793561
153 bp
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UTR
Exon/CDS
Intron
Rorug07G0112400.1

Sequence Viewer

Length: 153 bp
ATGATTACTTCTCGGGAGATTCACACCGCTGTGAGGCTTGTGCTTCCTGGTGAATTGGCCAAGCACGCCGTTTGTGAGGGGACTAAGGCTGTGACTAAGTTCACAACTCTTGAAAGGTTGTGTGATTTGGGTTTAGGGTTTGTGTGGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

50

Amino Acids

5.53

Weight (kDa)

7.85

Isoelectric Point (pI)

21.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012274)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 27
AcoI YGGCCR 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 33
AgsI TTSAA 1 cut(s) 113
AjnI CCWGG 1 cut(s) 46
AleI CACNNNNGTG 1 cut(s) 29
Ama87I CYCGRG 1 cut(s) 12
AoxI GGCC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 62
AvaI CYCGRG 1 cut(s) 12
BalI TGGCCA 1 cut(s) 59
BceAI ACGGC 1 cut(s) 53
BciT130I CCWGG 1 cut(s) 48
Bme1390I CCNGG 1 cut(s) 48
BmeT110I CYCGRG 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 33
BseBI CCWGG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 33
BshFI GGCC 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 94
BsnI GGCC 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 12
BspACI CCGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 84, 96
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BsuRI GGCC 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 66
CviJI RGCY 3 cut(s) 37, 59, 89
CviKI_1 RGCY 3 cut(s) 37, 59, 89
DdeI CTNAG 2 cut(s) 84, 96
EaeI YGGCCR 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 46
FaqI GGGAC 1 cut(s) 94
HaeIII GGCC 1 cut(s) 59
HinfI GANTC 1 cut(s) 19
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 102
Hpy188III TCNNGA 2 cut(s) 14, 110
Hpy8I GTNNAC 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 2 cut(s) 84, 96
LpnPI CCDG 2 cut(s) 33, 60
MaeIII GTNAC 1 cut(s) 91
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 1 cut(s) 53
MluNI TGGCCA 1 cut(s) 59
MnlI CCTC 2 cut(s) 27, 70
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
MslI CAYNNNNRTG 1 cut(s) 29
Msp20I TGGCCA 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 65
NmuCI GTSAC 1 cut(s) 91
OliI CACNNNNGTG 1 cut(s) 29
PfeI GAWTC 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
RseI CAYNNNNRTG 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 48
SetI ASST 1 cut(s) 119
SgeI CNNG 8 cut(s) 24, 26, 50, 59, 60, 73, 77, 122
SmiMI CAYNNNNRTG 1 cut(s) 29
Sse9I AATT 1 cut(s) 53
SsiI CCGC 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 46
TasI AATT 1 cut(s) 53
TfiI GAWTC 1 cut(s) 19
TseFI GTSAC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.