Rorug07G0112300

Belongs to the adaptor complexes medium subunit family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
8772548 .. 8776349
3802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0112300.1

Sequence Viewer

Length: 1317 bp
ATGGCTTCGCAGGATAAAGGTCGACCCTTACCTAAATTTGGTGAGTGGGATGTAAATAACCCAGCATCAGCTGAAGGATTTACTGTCATATTCAACAAGGCCCGAGATGATAAGAAGACCAATGCGTCTCATCCTAATGTTGTGACCCCACGAAAAGGCGATAGCAGCGTACGAAGAGGTACTAAATACAACAATGACTACCACGTCGACAATTATCCTCAATATCCCCAAAAGGTAAAGCACCAACGCACACCAACTGCATCCTTCTCCTTTCCTGTGCACGTCAGTCTGCTTGCAATCCCCGAAACCCTTATCGGAGTTGTTTTGAGAACGGTACACCAATCGAAGTGCAAGCTGTTCAGAAGAGAATCTATTCCGAATTTCAACAAGATGTCAAACATGAACAAACTCGATTTTGTTCCATTGGATTATACAGGCAAAAGGTACTTAATTTGGGTCACTGATGTCGAGATCCACCTTATTGCCCGTGATTTATTGCATACAATCCAAGAGCTTTGTCATATAGAAACAGCTCCAGACCCTCAAACTGAGAAAGATAATTCCAAGGCACTTGCCTTCATGAAACGTCACATGGATAGTGACCTACAGTTTGAGTTCATAAATGAGGATAGCGCCATAAAGCTTTGGCATGCGCTTCGCGAACGATATGGCAATGTTCGTGACTCCATACTTCCGAATACAGAAGCAGAATGGAAAGATCTTCGCTTCTCTGAATTTGACACTGTCATGCAATTTTATTCGGAAGCTCTCAGCATCAGAGCAATGATGCGTCTTTGTGGAAAAAAAATCACAGAAGACCAGTTGATTGAGAAAACCCTCAATACCTTCCCCGTATGTGCTATGAGGTCCTCTGACTTATTCCGGACTCATGTAAATGCAAGACGGATCACAAGTTTTCAACAGCTTATTGAAGCTATGGCCACTACTGAAAGACATGGCAATGAACTTGTGAAAAGAAGATTTGATAGGCTTCAAGATAGCTATCAAGAGCATCGTCCTATGGCTAGAGAAAGTCGCCATAGACGTCATGATCCATACGATCGAAATGCTCAAGAAGGTAATCGCTCAAGGCGACAATCCCACGACCGTAGGAGGCGTGATTTTGAGGGACATAGGGTTGGAAACCATAGAGCCAACGTTGGCCATAGGCACCACTTTCCAACGCCACCAGTCCTAGGGACTATGCATATTGCGCCAATGCGCCTCAATCAAGGGAGAATCCTCTTTACGGTGTCTATTTCTGATATGGAACGTCTGATCAATGGACCTGAATTTGCAATGTACCTACGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

438

Amino Acids

51.33

Weight (kDa)

9.7

Isoelectric Point (pI)

60.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AvrRpt-cleavage PF05627 6 - 39 2.6e-18 Cleavage site for pathogenic type III effector avirulence factor Avr
Retrotran_gag_2 PF14223 157 - 284 7.3e-08 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012274)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 124, 203
AatII GACGTC 1 cut(s) 1048
AccB1I GGYRCC 1 cut(s) 1170
AccI GTMKAC 2 cut(s) 22, 207
AccII CGCG 1 cut(s) 660
AccIII TCCGGA 1 cut(s) 882
AclI AACGTT 1 cut(s) 1158
AclWI GGATC 3 cut(s) 466, 914, 1046
AcoI YGGCCR 2 cut(s) 939, 1162
AcsI RAATTY 4 cut(s) 35, 379, 734, 1292
AcuI CTGAAG 1 cut(s) 93
AcyI GRCGYC 1 cut(s) 1045
AfaI GTAC 5 cut(s) 171, 181, 336, 446, 1304
AfiI CCNNNNNNNGG 4 cut(s) 38, 155, 1196, 1249
AgsI TTSAA 5 cut(s) 94, 385, 920, 932, 995
AjiI CACGTC 2 cut(s) 205, 283
AluBI AGCT 9 cut(s) 71, 355, 514, 533, 643, 767, 925, 935, 1002
AluI AGCT 9 cut(s) 71, 355, 514, 533, 643, 767, 925, 935, 1002
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 1 cut(s) 132
Alw44I GTGCAC 1 cut(s) 278
AlwI GGATC 3 cut(s) 466, 914, 1046
Ama87I CYCGRG 1 cut(s) 102
Aor13HI TCCGGA 1 cut(s) 882
AoxI GGCC 3 cut(s) 99, 939, 1162
ApaLI GTGCAC 1 cut(s) 278
ApeKI GCWGC 1 cut(s) 165
ApoI RAATTY 4 cut(s) 35, 379, 734, 1292
ArsI GACNNNNNNTTYG 2 cut(s) 593, 625
Asp700I GAANNNNTTC 1 cut(s) 372
AspA2I CCTAGG 1 cut(s) 1195
AspLEI GCGC 4 cut(s) 635, 655, 1216, 1224
AspS9I GGNCC 3 cut(s) 100, 867, 1286
AsuHPI GGTGA 1 cut(s) 53
AvaI CYCGRG 1 cut(s) 102
AvaII GGWCC 2 cut(s) 867, 1286
AvrII CCTAGG 1 cut(s) 1195
BaeGI GKGCMC 1 cut(s) 282
BalI TGGCCA 2 cut(s) 941, 1164
BanI GGYRCC 1 cut(s) 1170
BbsI GAAGAC 2 cut(s) 122, 822
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 177
BcgI CGANNNNNNTGC 4 cut(s) 638, 672, 1049, 1083
BclI TGATCA 1 cut(s) 1278
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 2 cut(s) 1026, 1196
BfmI CTRYAG 1 cut(s) 605
BfoI RGCGCY 1 cut(s) 636
BglII AGATCT 1 cut(s) 718
BisI GCNGC 1 cut(s) 166
BlnI CCTAGG 1 cut(s) 1195
BlsI GCNGC 1 cut(s) 167
Bme18I GGWCC 2 cut(s) 867, 1286
BmeT110I CYCGRG 1 cut(s) 102
BmgBI CACGTC 2 cut(s) 205, 283
BmgT120I GGNCC 3 cut(s) 100, 867, 1286
BmiI GGNNCC 1 cut(s) 1172
BmsI GCATC 5 cut(s) 74, 269, 777, 783, 1021
BpiI GAAGAC 2 cut(s) 122, 822
BpmI CTGGAG 1 cut(s) 519
BpuEI CTTGAG 2 cut(s) 1056, 1072
BsaBI GATNNNNATC 1 cut(s) 1002
BsaHI GRCGYC 1 cut(s) 1045
BsaJI CCNNGG 2 cut(s) 564, 1195
BsaWI WCCGGW 1 cut(s) 882
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 155, 1196, 1249
Bse1I ACTGG 2 cut(s) 820, 1190
Bse3DI GCAATG 4 cut(s) 679, 789, 967, 1305
Bse8I GATNNNNATC 1 cut(s) 1002
BseAI TCCGGA 1 cut(s) 882
BseDI CCNNGG 2 cut(s) 564, 1195
BseGI GGATG 3 cut(s) 55, 130, 260
BseJI GATNNNNATC 1 cut(s) 1002
BseLI CCNNNNNNNGG 4 cut(s) 38, 155, 1196, 1249
BseMI GCAATG 4 cut(s) 679, 789, 967, 1305
BseMII CTCAG 2 cut(s) 540, 784
BseNI ACTGG 2 cut(s) 820, 1190
BseSI GKGCMC 1 cut(s) 282
BseXI GCAGC 1 cut(s) 177
BseYI CCCAGC 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 660
Bsh1285I CGRYCG 2 cut(s) 1063, 1108
BshFI GGCC 3 cut(s) 101, 941, 1164
BshNI GGYRCC 1 cut(s) 1170
BsiEI CGRYCG 2 cut(s) 1063, 1108
BsiHKAI GWGCWC 1 cut(s) 282
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 1 cut(s) 883
BsiWI CGTACG 1 cut(s) 169
BslFI GGGAC 2 cut(s) 1143, 1213
BslI CCNNNNNNNGG 4 cut(s) 38, 155, 1196, 1249
BsmAI GTCTC 1 cut(s) 132
BsmBI CGTCTC 1 cut(s) 132
BsmFI GGGAC 2 cut(s) 1143, 1213
BsnI GGCC 3 cut(s) 101, 941, 1164
BsoBI CYCGRG 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 282
Bsp13I TCCGGA 1 cut(s) 882
Bsp143I GATC 6 cut(s) 471, 718, 906, 1051, 1060, 1278
Bsp68I TCGCGA 1 cut(s) 660
BspANI GGCC 3 cut(s) 101, 941, 1164
BspCNI CTCAG 2 cut(s) 541, 783
BspEI TCCGGA 1 cut(s) 882
BspFNI CGCG 1 cut(s) 660
BspHI TCATGA 2 cut(s) 579, 1048
BspLI GGNNCC 1 cut(s) 1172
BspPI GGATC 3 cut(s) 466, 914, 1046
BspT107I GGYRCC 1 cut(s) 1170
BsrDI GCAATG 4 cut(s) 679, 789, 967, 1305
BsrI ACTGG 2 cut(s) 820, 1190
BssECI CCNNGG 2 cut(s) 564, 1195
BssMI GATC 6 cut(s) 471, 718, 906, 1051, 1060, 1278
BssNI GRCGYC 1 cut(s) 1045
BssT1I CCWWGG 2 cut(s) 564, 1195
Bst4CI ACNGT 6 cut(s) 85, 334, 609, 745, 1109, 1252
Bst6I CTCTTC 2 cut(s) 169, 358
BstACI GRCGYC 1 cut(s) 1045
BstC8I GCNNGC 3 cut(s) 294, 353, 651
BstDEI CTNAG 2 cut(s) 549, 770
BstF5I GGATG 3 cut(s) 55, 130, 260
BstFNI CGCG 1 cut(s) 660
BstH2I RGCGCY 1 cut(s) 636
BstHHI GCGC 4 cut(s) 635, 655, 1216, 1224
BstKTI GATC 6 cut(s) 474, 721, 909, 1054, 1063, 1281
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 6 cut(s) 471, 718, 906, 1051, 1060, 1278
BstMCI CGRYCG 2 cut(s) 1063, 1108
BstMWI GCNNNNNNNGC 2 cut(s) 165, 1213
BstNSI RCATGY 1 cut(s) 653
BstSFI CTRYAG 1 cut(s) 605
BstSLI GKGCMC 1 cut(s) 282
BstUI CGCG 1 cut(s) 660
BstV1I GCAGC 1 cut(s) 177
BstV2I GAAGAC 2 cut(s) 122, 822
BstX2I RGATCY 2 cut(s) 471, 718
BstYI RGATCY 2 cut(s) 471, 718
BsuRI GGCC 3 cut(s) 101, 941, 1164
BtrI CACGTC 2 cut(s) 205, 283
BtsCI GGATG 3 cut(s) 55, 130, 260
BtsIMutI CAGTG 2 cut(s) 459, 741
BtuMI TCGCGA 1 cut(s) 660
Cac8I GCNNGC 3 cut(s) 294, 353, 651
CciI TCATGA 2 cut(s) 579, 1048
CfoI GCGC 4 cut(s) 635, 655, 1216, 1224
Cfr13I GGNCC 3 cut(s) 100, 867, 1286
CseI GACGC 2 cut(s) 114, 779
Csp6I GTAC 5 cut(s) 170, 180, 335, 445, 1303
CviAII CATG 8 cut(s) 400, 580, 592, 650, 748, 890, 956, 1049
CviQI GTAC 5 cut(s) 170, 180, 335, 445, 1303
DdeI CTNAG 2 cut(s) 549, 770
DpnI GATC 6 cut(s) 473, 720, 908, 1053, 1062, 1280
DpnII GATC 6 cut(s) 471, 718, 906, 1051, 1060, 1278
DrdI GACNNNNNNGTC 2 cut(s) 124, 203
DseDI GACNNNNNNGTC 2 cut(s) 124, 203
EaeI YGGCCR 2 cut(s) 939, 1162
Eam1104I CTCTTC 2 cut(s) 169, 358
EarI CTCTTC 2 cut(s) 169, 358
Eco130I CCWWGG 2 cut(s) 564, 1195
Eco47I GGWCC 2 cut(s) 867, 1286
Eco57I CTGAAG 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 102
EcoO109I RGGNCCY 1 cut(s) 867
EcoT14I CCWWGG 2 cut(s) 564, 1195
EcoT22I ATGCAT 1 cut(s) 1209
ErhI CCWWGG 2 cut(s) 564, 1195
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 8 cut(s) 403, 583, 595, 653, 751, 893, 959, 1052
FaqI GGGAC 2 cut(s) 1143, 1213
FatI CATG 8 cut(s) 399, 579, 591, 649, 747, 889, 955, 1048
FbaI TGATCA 1 cut(s) 1278
FblI GTMKAC 2 cut(s) 22, 207
Fnu4HI GCNGC 1 cut(s) 166
FokI GGATG 3 cut(s) 62, 117, 247
Fsp4HI GCNGC 1 cut(s) 166
FspBI CTAG 2 cut(s) 1026, 1196
GlaI GCGC 4 cut(s) 634, 654, 1215, 1223
GluI GCNGC 1 cut(s) 166
GsaI CCCAGC 1 cut(s) 65
GsuI CTGGAG 1 cut(s) 519
HaeII RGCGCY 1 cut(s) 636
HaeIII GGCC 3 cut(s) 101, 941, 1164
HapII CCGG 1 cut(s) 883
HgaI GACGC 2 cut(s) 114, 779
HhaI GCGC 4 cut(s) 635, 655, 1216, 1224
Hin1I GRCGYC 1 cut(s) 1045
Hin1II CATG 8 cut(s) 403, 583, 595, 653, 751, 893, 959, 1052
Hin6I GCGC 4 cut(s) 633, 653, 1214, 1222
HinP1I GCGC 4 cut(s) 633, 653, 1214, 1222
HincII GTYRAC 2 cut(s) 23, 208
HindII GTYRAC 2 cut(s) 23, 208
HindIII AAGCTT 1 cut(s) 641
HinfI GANTC 4 cut(s) 368, 683, 886, 1239
HpaII CCGG 1 cut(s) 883
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 4 cut(s) 23, 208, 280, 337
Hpy8I GTNNAC 4 cut(s) 23, 208, 280, 337
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 6 cut(s) 68, 274, 586, 856, 1070, 1305
HpyCH4III ACNGT 6 cut(s) 85, 334, 609, 745, 1109, 1252
HpyCH4IV ACGT 6 cut(s) 204, 282, 586, 1045, 1158, 1273
HpyCH4V TGCA 9 cut(s) 260, 280, 296, 351, 499, 751, 899, 1207, 1298
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 1213
HpyF3I CTNAG 2 cut(s) 549, 770
HpySE526I ACGT 6 cut(s) 204, 282, 586, 1045, 1158, 1273
Hsp92I GRCGYC 1 cut(s) 1045
Hsp92II CATG 8 cut(s) 403, 583, 595, 653, 751, 893, 959, 1052
HspAI GCGC 4 cut(s) 633, 653, 1214, 1222
Kpn2I TCCGGA 1 cut(s) 882
Ksp22I TGATCA 1 cut(s) 1278
Kzo9I GATC 6 cut(s) 471, 718, 906, 1051, 1060, 1278
LmnI GCTCC 1 cut(s) 538
LpnPI CCDG 8 cut(s) 75, 288, 420, 549, 833, 896, 1203, 1302
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 5 cut(s) 74, 269, 777, 783, 1021
MaeI CTAG 2 cut(s) 1026, 1196
MaeII ACGT 6 cut(s) 204, 282, 586, 1045, 1158, 1273
MaeIII GTNAC 5 cut(s) 142, 457, 587, 599, 680
MalI GATC 6 cut(s) 473, 720, 908, 1053, 1062, 1280
MboI GATC 6 cut(s) 471, 718, 906, 1051, 1060, 1278
MboII GAAGA 6 cut(s) 127, 186, 375, 713, 827, 990
MflI RGATCY 2 cut(s) 471, 718
MhlI GDGCHC 1 cut(s) 282
MlsI TGGCCA 2 cut(s) 941, 1164
MluCI AATT 8 cut(s) 35, 211, 379, 450, 559, 734, 752, 1292
MluNI TGGCCA 2 cut(s) 941, 1164
MlyI GAGTC 2 cut(s) 677, 880
MmeI TCCRAC 2 cut(s) 1120, 1205
Mox20I TGGCCA 2 cut(s) 941, 1164
Mph1103I ATGCAT 1 cut(s) 1209
MroI TCCGGA 1 cut(s) 882
MroXI GAANNNNTTC 1 cut(s) 372
MscI TGGCCA 2 cut(s) 941, 1164
MseI TTAA 1 cut(s) 449
MslI CAYNNNNRTG 4 cut(s) 135, 746, 894, 960
Msp20I TGGCCA 2 cut(s) 941, 1164
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 883
MvnI CGCG 1 cut(s) 660
MwoI GCNNNNNNNGC 2 cut(s) 165, 1213
NdeII GATC 6 cut(s) 471, 718, 906, 1051, 1060, 1278
NlaIII CATG 8 cut(s) 403, 583, 595, 653, 751, 893, 959, 1052
NlaIV GGNNCC 1 cut(s) 1172
NmuCI GTSAC 5 cut(s) 142, 457, 587, 599, 680
NruI TCGCGA 1 cut(s) 660
NsiI ATGCAT 1 cut(s) 1209
NspI RCATGY 1 cut(s) 653
PaeI GCATGC 1 cut(s) 653
PagI TCATGA 2 cut(s) 579, 1048
PcsI WCGNNNNNNNCGW 2 cut(s) 1042, 1090
PdmI GAANNNNTTC 1 cut(s) 372
PfeI GAWTC 2 cut(s) 368, 1239
Pfl23II CGTACG 1 cut(s) 169
PflFI GACNNNGTC 1 cut(s) 743
PkrI GCNGC 1 cut(s) 167
Ple19I CGATCG 1 cut(s) 1063
PleI GAGTC 2 cut(s) 677, 880
PpsI GAGTC 2 cut(s) 677, 880
PpuMI RGGWCCY 1 cut(s) 867
Psp1406I AACGTT 1 cut(s) 1158
Psp5II RGGWCCY 1 cut(s) 867
PspFI CCCAGC 1 cut(s) 61
PspLI CGTACG 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 1172
PspPI GGNCC 3 cut(s) 100, 867, 1286
PspPPI RGGWCCY 1 cut(s) 867
PsuI RGATCY 2 cut(s) 471, 718
PsyI GACNNNGTC 1 cut(s) 743
PvuI CGATCG 1 cut(s) 1063
PvuII CAGCTG 1 cut(s) 71
RruI TCGCGA 1 cut(s) 660
RsaI GTAC 5 cut(s) 171, 181, 336, 446, 1304
RsaNI GTAC 5 cut(s) 170, 180, 335, 445, 1303
RseI CAYNNNNRTG 4 cut(s) 135, 746, 894, 960
SalI GTCGAC 2 cut(s) 21, 206
SaqAI TTAA 1 cut(s) 449
SatI GCNGC 1 cut(s) 166
Sau3AI GATC 6 cut(s) 471, 718, 906, 1051, 1060, 1278
Sau96I GGNCC 3 cut(s) 100, 867, 1286
SchI GAGTC 2 cut(s) 677, 880
SduI GDGCHC 1 cut(s) 282
SfaNI GCATC 5 cut(s) 74, 269, 777, 783, 1021
SfcI CTRYAG 1 cut(s) 605
SinI GGWCC 2 cut(s) 867, 1286
SmiMI CAYNNNNRTG 4 cut(s) 135, 746, 894, 960
SmlI CTYRAG 2 cut(s) 1071, 1087
SmoI CTYRAG 2 cut(s) 1071, 1087
SphI GCATGC 1 cut(s) 653
Sse9I AATT 8 cut(s) 35, 211, 379, 450, 559, 734, 752, 1292
SspMI CTAG 2 cut(s) 1026, 1196
StyI CCWWGG 2 cut(s) 564, 1195
TaaI ACNGT 6 cut(s) 85, 334, 609, 745, 1109, 1252
TaiI ACGT 6 cut(s) 207, 285, 589, 1048, 1161, 1276
TaqI TCGA 6 cut(s) 22, 207, 344, 411, 468, 1063
TasI AATT 8 cut(s) 35, 211, 379, 450, 559, 734, 752, 1292
TfiI GAWTC 2 cut(s) 368, 1239
Tru1I TTAA 1 cut(s) 449
Tru9I TTAA 1 cut(s) 449
TscAI CASTG 2 cut(s) 466, 748
TseFI GTSAC 5 cut(s) 142, 457, 587, 599, 680
TseI GCWGC 1 cut(s) 165
Tsp45I GTSAC 5 cut(s) 142, 457, 587, 599, 680
TspDTI ATGAA 5 cut(s) 416, 568, 596, 607, 978
TspGWI ACGGA 1 cut(s) 919
TspRI CASTG 2 cut(s) 466, 748
Tth111I GACNNNGTC 1 cut(s) 743
VneI GTGCAC 1 cut(s) 278
VpaK11BI GGWCC 2 cut(s) 867, 1286
XapI RAATTY 4 cut(s) 35, 379, 734, 1292
XceI RCATGY 1 cut(s) 653
XmaJI CCTAGG 1 cut(s) 1195
XmiI GTMKAC 2 cut(s) 22, 207
XmnI GAANNNNTTC 1 cut(s) 372
XspI CTAG 2 cut(s) 1026, 1196
ZraI GACGTC 1 cut(s) 1046
Zsp2I ATGCAT 1 cut(s) 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.