Rmu_ssc0000038.1_g000017

Belongs to the adaptor complexes medium subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000038.1
OG0012274
Physical Location & Seq
Reverse (-)
59048 .. 67375
8328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000038.1_g000017.1.cds

Sequence Viewer

Length: 1677 bp
atgccggtggctgcttccgccgtttacttcttgaacctccgcggagatgtcctcatcaaccgtctctaccgtgatgacgtcggtggaaatatggtggatgctttccgaatgcatataatgcaaacaaaagagcttggtacatgtcctgtgcggcagattggtggatgctctttcttttacatgagaatcagcaatgtttacattgtgattgtagtcagcagcaatgcgaatgtagcttgtgccttcaagtttgtggtcgaggccgttgcgctgttcaaatcctattttggtggggcttttgatgaagatgcaattcgtaataattttgttttgatttatgagctgttggacgaaattatggattttggttatccccagaatctttctccagaaattttaaagctttacatcacccaggaaggagtgcgttcgccattctcttctaagcctacagataaacctgtccctaatgcaactctgcaagttacaggtgctgtcggttggcggagagagggccttgtttataaaaagaatgaggttttcttggatattgtggaaagtgtaaatcttttgatgtcttccaaaggtagtgttctacgctgtgatgtaactgggaagattcttatgaagtgctttctctctggaatgcctgatttgaagttagggttgaatgataagattggccttgaaaaagagtcgcaaattaaatctcgtcctaccaaaagtggaaaaactattgagctcgatgatgttactttccatcaatgtgtaaatttgacgaggtttaactcagagaagacagttagttttgtgccacctgatggtgaattcgaattgatgaagtaccgtataactgagggtgtgaatcttccgttccgtgtattgcccacaattaaggaactaggtagaactcgcattgaagtaaatgttaaggtaaagagtgtttttggtgccaagatgtttgcgcttggggttgtcatcaaaattcctgtgccaaaacaaacggcaaaaacaagttttcaagtgacctctggtcgagcgaagtacaatgctgctattgattgcttggtttggaagataagaaagtttccgggacaaactgagccaactttgagtgcggaagttgagctgatttccacgatgacagaaaagaagtcttggacaagaccgccaattcagatggagttccaggttccaatgtttacagcatctggtttacgtgtacgttttctcaaggtatgggagaaaagtggttacaatactgttgagtgggttcgctatatcaccaaagctggttcatatgagattagcctcagctctttccctactcgtacgcgtactcctcctcctcctagtttgataatattcgttcaacaccctctcctcctccaagccttcgtcctccaaagtacttttcctaggttccaacaaaccaagcaaccagccaaccacatagtctctctcttcttattcctcggcaagaaaatgtcacaccagtactcactcctcagaagctcctccacaacctcgtccacatgtgtcaaagcaaaggctccatcagccaatttcctcctcgatcagctttcgacaatcattgaacaagggctccaggcgttggtttacatcaatctctgtagccgtgagccgcaagtaaaatgctccgagtacgtaccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04721 ko04961 ko05016 map04144 map04721 map04961 map05016
Pfam Domains
Protein Families
Adap_comp_sub

Protein Analysis

558

Amino Acids

62.71

Weight (kDa)

9.41

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012274)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46630 AT5G46630
fragaria_vesca FvH4_5g21870 FvH4_5g21870
malus_domestica MD06G1032900.v1.1 MD16G1276300.v1.1
prunus_persica Prupe.5G038900_v2.0.a1
pyrus_communis pycom06g02720
rosa_chinensis RchiOBHm_Chr7g0209421
rosa_laevigata RLG00000003139
rosa_multiflora Rmu_ssc0000038.1_g000017
rosa_roxburghii Rroxscaffold_3G00249490
rosa_rugosa Rorug07G0112300 Rorug07G0112400
rosa_samantha Rh7AG246300 Rh7BG241300 Rh7CG261900 Rh7DG252600
rosa_wichuraiana Rw7G020840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 525
AatII GACGTC 1 cut(s) 81
AccB1I GGYRCC 1 cut(s) 950
AccB7I CCANNNNNTGG 2 cut(s) 821, 1615
AccII CGCG 2 cut(s) 42, 1336
AciI CCGC 8 cut(s) 18, 40, 42, 151, 505, 1118, 1169, 1646
AcsI RAATTY 4 cut(s) 393, 772, 827, 984
AcyI GRCGYC 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 821, 1615
AflIII ACRYGT 4 cut(s) 140, 1219, 1334, 1535
AhdI GACNNNNNGTC 1 cut(s) 1032
AjnI CCWGG 3 cut(s) 414, 1188, 1608
AjuI GAANNNNNNNTTGG 2 cut(s) 1398, 1430
AloI GAACNNNNNNTCC 2 cut(s) 1590, 1622
Alw21I GWGCWC 1 cut(s) 744
Alw26I GTCTC 2 cut(s) 68, 1462
AlwNI CAGNNNCTG 2 cut(s) 494, 1211
AoxI GGCC 3 cut(s) 261, 514, 682
ApeKI GCWGC 3 cut(s) 11, 219, 1052
ApoI RAATTY 4 cut(s) 393, 772, 827, 984
AspA2I CCTAGG 1 cut(s) 1418
AspLEI GCGC 2 cut(s) 271, 967
AspS9I GGNCC 1 cut(s) 514
AsuC2I CCSGG 1 cut(s) 1092
AsuHPI GGTGA 3 cut(s) 403, 836, 1276
AsuII TTCGAA 1 cut(s) 831
AvrII CCTAGG 1 cut(s) 1418
BanI GGYRCC 1 cut(s) 950
BanII GRGCYC 2 cut(s) 744, 1608
BbsI GAAGAC 2 cut(s) 570, 803
Bbv12I GWGCWC 1 cut(s) 744
BbvCI CCTCAGC 1 cut(s) 1313
BbvI GCAGC 2 cut(s) 231, 1039
BccI CCATC 4 cut(s) 768, 815, 1174, 1564
BceAI ACGGC 4 cut(s) 5, 248, 1020, 1623
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BciT130I CCWGG 3 cut(s) 416, 1190, 1610
BcnI CCSGG 1 cut(s) 1092
BcoDI GTCTC 2 cut(s) 68, 1462
BfaI CTAG 3 cut(s) 902, 1353, 1419
BfmI CTRYAG 2 cut(s) 450, 1633
BisI GCNGC 5 cut(s) 12, 152, 220, 1053, 1646
BlnI CCTAGG 1 cut(s) 1418
BlsI GCNGC 5 cut(s) 13, 153, 221, 1054, 1647
BmcAI AGTACT 2 cut(s) 1411, 1499
Bme1390I CCNGG 4 cut(s) 416, 1092, 1190, 1610
BmeRI GACNNNNNGTC 1 cut(s) 1032
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 5 cut(s) 952, 1194, 1424, 1554, 1607
BmrFI CCNGG 4 cut(s) 416, 1092, 1190, 1610
BmrI ACTGGG 1 cut(s) 621
BmsI GCATC 4 cut(s) 88, 155, 298, 1217
BmuI ACTGGG 1 cut(s) 621
BpiI GAAGAC 2 cut(s) 570, 803
BplI GAGNNNNNCTC 2 cut(s) 36, 68
BpmI CTGGAG 2 cut(s) 372, 1592
Bpu10I CCTNAGC 1 cut(s) 1313
Bpu14I TTCGAA 1 cut(s) 831
BpuEI CTTGAG 1 cut(s) 1217
BpuMI CCSGG 1 cut(s) 1092
BsaAI YACGTR 2 cut(s) 1220, 1669
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 4 cut(s) 40, 414, 1418, 1474
BsaXI ACNNNNNCTCC 8 cut(s) 1324, 1330, 1354, 1360, 1365, 1395, 1590, 1620
Bsc4I CCNNNNNNNGG 2 cut(s) 821, 1615
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 2 cut(s) 616, 1495
Bse3DI GCAATG 2 cut(s) 199, 229
BseBI CCWGG 3 cut(s) 416, 1190, 1610
BseDI CCNNGG 4 cut(s) 40, 414, 1418, 1474
BseGI GGATG 2 cut(s) 103, 170
BseLI CCNNNNNNNGG 2 cut(s) 821, 1615
BseMI GCAATG 2 cut(s) 199, 229
BseMII CTCAG 5 cut(s) 804, 846, 1092, 1327, 1522
BseNI ACTGG 2 cut(s) 616, 1495
BseRI GAGGAG 8 cut(s) 1332, 1335, 1338, 1373, 1376, 1496, 1507, 1562
BseXI GCAGC 2 cut(s) 231, 1039
Bsh1236I CGCG 2 cut(s) 42, 1336
BshFI GGCC 3 cut(s) 263, 516, 684
BshNI GGYRCC 1 cut(s) 950
BsiHKAI GWGCWC 1 cut(s) 744
BsiSI CCGG 2 cut(s) 5, 1091
BsiWI CGTACG 1 cut(s) 1331
BslFI GGGAC 2 cut(s) 449, 1107
BslI CCNNNNNNNGG 2 cut(s) 821, 1615
BsmAI GTCTC 2 cut(s) 68, 1462
BsmBI CGTCTC 1 cut(s) 68
BsmFI GGGAC 2 cut(s) 449, 1107
BsmI GAATGC 2 cut(s) 114, 651
BsnI GGCC 3 cut(s) 263, 516, 684
Bsp119I TTCGAA 1 cut(s) 831
Bsp1286I GDGCHC 2 cut(s) 744, 1608
Bsp143I GATC 1 cut(s) 1576
BspACI CCGC 8 cut(s) 18, 40, 42, 151, 505, 1118, 1169, 1646
BspANI GGCC 3 cut(s) 263, 516, 684
BspCNI CTCAG 5 cut(s) 803, 847, 1093, 1326, 1521
BspFNI CGCG 2 cut(s) 42, 1336
BspLI GGNNCC 5 cut(s) 952, 1194, 1424, 1554, 1607
BspT104I TTCGAA 1 cut(s) 831
BspT107I GGYRCC 1 cut(s) 950
BsrDI GCAATG 2 cut(s) 199, 229
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 2 cut(s) 616, 1495
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 4 cut(s) 40, 414, 1418, 1474
BssMI GATC 1 cut(s) 1576
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 1418
Bst2UI CCWGG 3 cut(s) 416, 1190, 1610
Bst4CI ACNGT 5 cut(s) 62, 71, 802, 848, 1264
Bst6I CTCTTC 2 cut(s) 445, 1469
BstACI GRCGYC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 118
BstBAI YACGTR 2 cut(s) 1220, 1669
BstBI TTCGAA 1 cut(s) 831
BstDEI CTNAG 6 cut(s) 444, 790, 855, 1101, 1313, 1508
BstDSI CCRYGG 1 cut(s) 40
BstF5I GGATG 2 cut(s) 103, 170
BstFNI CGCG 2 cut(s) 42, 1336
BstHHI GCGC 2 cut(s) 271, 967
BstKTI GATC 1 cut(s) 1579
BstMAI GTCTC 2 cut(s) 68, 1462
BstMBI GATC 1 cut(s) 1576
BstMWI GCNNNNNNNGC 4 cut(s) 17, 118, 233, 1559
BstNI CCWGG 3 cut(s) 416, 1190, 1610
BstNSI RCATGY 2 cut(s) 144, 1539
BstSCI CCNGG 4 cut(s) 414, 1090, 1188, 1608
BstSFI CTRYAG 2 cut(s) 450, 1633
BstSNI TACGTA 1 cut(s) 1669
BstUI CGCG 2 cut(s) 42, 1336
BstV1I GCAGC 2 cut(s) 231, 1039
BstV2I GAAGAC 2 cut(s) 570, 803
BsuRI GGCC 3 cut(s) 263, 516, 684
BtgI CCRYGG 1 cut(s) 40
BtsCI GGATG 2 cut(s) 103, 170
CaiI CAGNNNCTG 2 cut(s) 494, 1211
CfoI GCGC 2 cut(s) 271, 967
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 1 cut(s) 514
Cfr42I CCGCGG 1 cut(s) 43
CviAII CATG 3 cut(s) 141, 181, 1536
DdeI CTNAG 6 cut(s) 444, 790, 855, 1101, 1313, 1508
DpnI GATC 1 cut(s) 1578
DpnII GATC 1 cut(s) 1576
DraI TTTAAA 1 cut(s) 399
DriI GACNNNNNGTC 1 cut(s) 1032
Eam1104I CTCTTC 2 cut(s) 445, 1469
Eam1105I GACNNNNNGTC 1 cut(s) 1032
EarI CTCTTC 2 cut(s) 445, 1469
EciI GGCGGA 2 cut(s) 7, 520
Ecl136II GAGCTC 1 cut(s) 742
Eco105I TACGTA 1 cut(s) 1669
Eco130I CCWWGG 1 cut(s) 1418
Eco24I GRGCYC 2 cut(s) 744, 1608
Eco53kI GAGCTC 1 cut(s) 742
EcoICRI GAGCTC 1 cut(s) 742
EcoO109I RGGNCCY 1 cut(s) 514
EcoRI GAATTC 1 cut(s) 827
EcoRII CCWGG 3 cut(s) 414, 1188, 1608
EcoT14I CCWWGG 1 cut(s) 1418
EcoT22I ATGCAT 1 cut(s) 114
EcoT38I GRGCYC 2 cut(s) 744, 1608
ErhI CCWWGG 1 cut(s) 1418
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 3 cut(s) 144, 184, 1539
FaqI GGGAC 2 cut(s) 449, 1107
FatI CATG 3 cut(s) 140, 180, 1535
FauNDI CATATG 1 cut(s) 1300
Fnu4HI GCNGC 5 cut(s) 12, 152, 220, 1053, 1646
FokI GGATG 2 cut(s) 110, 177
FriOI GRGCYC 2 cut(s) 744, 1608
Fsp4HI GCNGC 5 cut(s) 12, 152, 220, 1053, 1646
FspBI CTAG 3 cut(s) 902, 1353, 1419
GlaI GCGC 2 cut(s) 270, 966
GluI GCNGC 5 cut(s) 12, 152, 220, 1053, 1646
GsuI CTGGAG 2 cut(s) 372, 1592
HaeIII GGCC 3 cut(s) 263, 516, 684
HapII CCGG 2 cut(s) 5, 1091
HhaI GCGC 2 cut(s) 271, 967
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 3 cut(s) 144, 184, 1539
Hin6I GCGC 2 cut(s) 269, 965
HinP1I GCGC 2 cut(s) 269, 965
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 5 cut(s) 186, 379, 619, 695, 865
HpaII CCGG 2 cut(s) 5, 1091
HphI GGTGA 3 cut(s) 403, 836, 1276
Hpy166II GTNNAC 7 cut(s) 25, 199, 1203, 1217, 1223, 1533, 1621
Hpy188I TCNGA 5 cut(s) 107, 793, 1179, 1511, 1663
Hpy188III TCNNGA 3 cut(s) 31, 389, 642
Hpy8I GTNNAC 7 cut(s) 25, 199, 1203, 1217, 1223, 1533, 1621
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 3 cut(s) 253, 413, 1405
HpyCH4III ACNGT 5 cut(s) 62, 71, 802, 848, 1264
HpyCH4IV ACGT 4 cut(s) 78, 1219, 1225, 1668
HpyCH4V TGCA 5 cut(s) 112, 121, 311, 473, 481
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 118, 233, 1559
HpyF3I CTNAG 6 cut(s) 444, 790, 855, 1101, 1313, 1508
HpySE526I ACGT 4 cut(s) 78, 1219, 1225, 1668
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 3 cut(s) 144, 184, 1539
HspAI GCGC 2 cut(s) 269, 965
KspI CCGCGG 1 cut(s) 43
Kzo9I GATC 1 cut(s) 1576
LmnI GCTCC 4 cut(s) 1520, 1558, 1611, 1664
Lsp1109I GCAGC 2 cut(s) 231, 1039
LweI GCATC 4 cut(s) 88, 155, 298, 1217
MaeI CTAG 3 cut(s) 902, 1353, 1419
MaeII ACGT 4 cut(s) 78, 1219, 1225, 1668
MaeIII GTNAC 6 cut(s) 484, 607, 751, 1024, 1253, 1488
MalI GATC 1 cut(s) 1578
MboI GATC 1 cut(s) 1576
MboII GAAGA 8 cut(s) 317, 432, 570, 628, 808, 860, 1087, 1456
MhlI GDGCHC 2 cut(s) 744, 1608
MluI ACGCGT 1 cut(s) 1334
MlyI GAGTC 1 cut(s) 704
MmeI TCCRAC 2 cut(s) 327, 1450
Mph1103I ATGCAT 1 cut(s) 114
MseI TTAA 5 cut(s) 398, 705, 786, 894, 930
MslI CAYNNNNRTG 1 cut(s) 765
MspA1I CMGCKG 1 cut(s) 42
MspI CCGG 2 cut(s) 5, 1091
MspR9I CCNGG 4 cut(s) 416, 1092, 1190, 1610
Mva1269I GAATGC 2 cut(s) 114, 651
MvaI CCWGG 3 cut(s) 416, 1190, 1610
MvnI CGCG 2 cut(s) 42, 1336
MwoI GCNNNNNNNGC 4 cut(s) 17, 118, 233, 1559
NciI CCSGG 1 cut(s) 1092
NdeI CATATG 1 cut(s) 1300
NdeII GATC 1 cut(s) 1576
NlaIII CATG 3 cut(s) 144, 184, 1539
NlaIV GGNNCC 5 cut(s) 952, 1194, 1424, 1554, 1607
NmeAIII GCCGAG 1 cut(s) 1455
NmuCI GTSAC 2 cut(s) 1024, 1488
NsiI ATGCAT 1 cut(s) 114
NspI RCATGY 2 cut(s) 144, 1539
NspV TTCGAA 1 cut(s) 831
PciI ACATGT 2 cut(s) 140, 1535
PctI GAATGC 2 cut(s) 114, 651
PfeI GAWTC 4 cut(s) 186, 379, 619, 865
Pfl23II CGTACG 1 cut(s) 1331
PflMI CCANNNNNTGG 2 cut(s) 821, 1615
PfoI TCCNGGA 1 cut(s) 1090
PkrI GCNGC 5 cut(s) 13, 153, 221, 1054, 1647
PleI GAGTC 1 cut(s) 703
PpsI GAGTC 1 cut(s) 703
Ppu21I YACGTR 2 cut(s) 1220, 1669
PscI ACATGT 2 cut(s) 140, 1535
PsiI TTATAA 1 cut(s) 525
Psp124BI GAGCTC 1 cut(s) 744
Psp6I CCWGG 3 cut(s) 414, 1188, 1608
PspGI CCWGG 3 cut(s) 414, 1188, 1608
PspLI CGTACG 1 cut(s) 1331
PspN4I GGNNCC 5 cut(s) 952, 1194, 1424, 1554, 1607
PspPI GGNCC 1 cut(s) 514
PstNI CAGNNNCTG 2 cut(s) 494, 1211
RseI CAYNNNNRTG 1 cut(s) 765
SacI GAGCTC 1 cut(s) 744
SacII CCGCGG 1 cut(s) 43
SaqAI TTAA 5 cut(s) 398, 705, 786, 894, 930
SatI GCNGC 5 cut(s) 12, 152, 220, 1053, 1646
Sau3AI GATC 1 cut(s) 1576
Sau96I GGNCC 1 cut(s) 514
ScaI AGTACT 2 cut(s) 1411, 1499
SchI GAGTC 1 cut(s) 704
ScrFI CCNGG 4 cut(s) 416, 1092, 1190, 1610
SduI GDGCHC 2 cut(s) 744, 1608
SfaNI GCATC 4 cut(s) 88, 155, 298, 1217
SfcI CTRYAG 2 cut(s) 450, 1633
Sfr303I CCGCGG 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 831
SgrBI CCGCGG 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 765
SmlI CTYRAG 1 cut(s) 1232
SmoI CTYRAG 1 cut(s) 1232
SnaBI TACGTA 1 cut(s) 1669
SsiI CCGC 8 cut(s) 18, 40, 42, 151, 505, 1118, 1169, 1646
SspI AATATT 1 cut(s) 1365
SspMI CTAG 3 cut(s) 902, 1353, 1419
SstI GAGCTC 1 cut(s) 744
StyD4I CCNGG 4 cut(s) 414, 1090, 1188, 1608
StyI CCWWGG 1 cut(s) 1418
TaaI ACNGT 5 cut(s) 62, 71, 802, 848, 1264
TaiI ACGT 4 cut(s) 81, 1222, 1228, 1671
TaqI TCGA 6 cut(s) 258, 744, 831, 1036, 1575, 1586
TatI WGTACW 3 cut(s) 1044, 1409, 1497
TauI GCSGC 2 cut(s) 154, 1648
TfiI GAWTC 4 cut(s) 186, 379, 619, 865
Tru1I TTAA 5 cut(s) 398, 705, 786, 894, 930
Tru9I TTAA 5 cut(s) 398, 705, 786, 894, 930
TseFI GTSAC 2 cut(s) 1024, 1488
TseI GCWGC 3 cut(s) 11, 219, 1052
Tsp45I GTSAC 2 cut(s) 1024, 1488
TspDTI ATGAA 4 cut(s) 318, 641, 854, 1287
TspGWI ACGGA 2 cut(s) 861, 866
Van91I CCANNNNNTGG 2 cut(s) 821, 1615
XapI RAATTY 4 cut(s) 393, 772, 827, 984
XceI RCATGY 2 cut(s) 144, 1539
XmaJI CCTAGG 1 cut(s) 1418
XspI CTAG 3 cut(s) 902, 1353, 1419
ZraI GACGTC 1 cut(s) 79
ZrmI AGTACT 2 cut(s) 1411, 1499
Zsp2I ATGCAT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.