Rh7AG246300

Belongs to the adaptor complexes medium subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0012274
Physical Location & Seq
Reverse (-)
24295647 .. 24302121
6475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG246300.1

Sequence Viewer

Length: 1080 bp
ATGCCGGTGGCTGCTTCCGCCGTTTACTTCTTGAACCTCCGCGGAGATGTCCTCATCAACCGTCTCTACCGTGACGACGTCGGTGGAAATATGGTGGATGCGTTCCGAATGCATATAATGCAAACAAAAGAGCTTGGTACATGTCCTGTGCGGCAGATTGGTGGATGCTCTTTCTTTTATATGAGAATCAGCAATGTTTACATTGTGATTGTAGTCAGCAGCAATGCGAATGTAGCTTGTGCCTTCAAGTTTGTGGTCGAGGCCGTTGCGCTGTTCAAATCCTATTTTGGTGGGGCTTTTGATGAAGATGCAATTCGTAATAATTTTGTTTTGATTTATGAGCTGTTGGACGAAATTATGGATTTTGGTTATCCCCAGAATCTTTCTCCAGAAATTTTAAAGCTTTACATCACCCAGGAAGGAGTGCGTTCGCCCTTCTCTTCTAAGCCTACAGATAAACCTGTCCCTAATGCAACTCTGCAAGTTACAGGTGCTGTCGGTTGGCGGAGAGAGGGCCTTGTTTATAAAAAGAATGAGGTTTTCTTGGATATTGTGGAAAGTGTAAATCTTTTGATGTCTTCCAAAGGTAGTGTTCTACGCTGCGATGTAACTGGGAAGATTCTTATGAAGTGCTTTCTATCTGGAATGCCTGATTTGAAGTTAGGGTTGAATGATAAGATTGGCCTTGAGAAAGAGTCGCAAATTAAATCTCGTCCTACCAAAAGTGGAAAAACTATTGAGCTCGATGATGTTACTTTCCATCAATGTGTAAATTTGACGAGGTTTAACTCAGAGAAGACAGTTAGTTTTGTGCCACCTGATGGTGAATTCGAATTGATGAAGTACCGTATAACTGAGGGTGTGAATCTTCCGTTCCGAGTATTGCCCACAATTAAGGAACTAGGTAGAACTCGCATTGAAGTAAATGTTAAGGTAAAGAGTGTTTTTGGTGCCAAGATGTTTGCGCTTGGGGTTGTCATCAAAATTCCTGTGCCAAAACAAACGGCAAAAACAAGTTTTCAAGTGACCTCTGGTCGAGCGAAGTACAATGCTGCTATTGATTGCTTGGTTTGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04721 ko04961 ko05016 map04144 map04721 map04961 map05016
Pfam Domains
Protein Families
Adap_comp_sub

Protein Analysis

359

Amino Acids

40.11

Weight (kDa)

9.15

Isoelectric Point (pI)

37.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adap_comp_sub PF00928 167 - 359 1.6e-65 Adaptor complexes medium subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012274)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46630 AT5G46630
fragaria_vesca FvH4_5g21870 FvH4_5g21870
malus_domestica MD06G1032900.v1.1 MD16G1276300.v1.1
prunus_persica Prupe.5G038900_v2.0.a1
pyrus_communis pycom06g02720
rosa_chinensis RchiOBHm_Chr7g0209421
rosa_laevigata RLG00000003139
rosa_multiflora Rmu_ssc0000038.1_g000017
rosa_roxburghii Rroxscaffold_3G00249490
rosa_rugosa Rorug07G0112300 Rorug07G0112400
rosa_samantha Rh7AG246300 Rh7BG241300 Rh7CG261900 Rh7DG252600
rosa_wichuraiana Rw7G020840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 525
AatII GACGTC 1 cut(s) 81
AccB1I GGYRCC 1 cut(s) 950
AccB7I CCANNNNNTGG 1 cut(s) 821
AccII CGCG 1 cut(s) 42
AciI CCGC 5 cut(s) 18, 40, 42, 151, 505
AcsI RAATTY 4 cut(s) 393, 772, 827, 984
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 3 cut(s) 139, 845, 1046
AfiI CCNNNNNNNGG 1 cut(s) 821
AflIII ACRYGT 1 cut(s) 140
AgsI TTSAA 7 cut(s) 34, 247, 277, 658, 670, 920, 1022
AhdI GACNNNNNGTC 1 cut(s) 1032
AjnI CCWGG 1 cut(s) 414
AluBI AGCT 5 cut(s) 133, 236, 343, 403, 742
AluI AGCT 5 cut(s) 133, 236, 343, 403, 742
Alw21I GWGCWC 1 cut(s) 744
Alw26I GTCTC 1 cut(s) 68
AlwNI CAGNNNCTG 1 cut(s) 494
AoxI GGCC 3 cut(s) 261, 514, 682
ApeKI GCWGC 4 cut(s) 11, 219, 600, 1052
ApoI RAATTY 4 cut(s) 393, 772, 827, 984
AspLEI GCGC 2 cut(s) 271, 967
AspS9I GGNCC 1 cut(s) 514
AsuHPI GGTGA 2 cut(s) 403, 836
AsuII TTCGAA 1 cut(s) 831
BanI GGYRCC 1 cut(s) 950
BanII GRGCYC 1 cut(s) 744
BbsI GAAGAC 2 cut(s) 570, 803
Bbv12I GWGCWC 1 cut(s) 744
BbvI GCAGC 3 cut(s) 231, 587, 1039
BccI CCATC 2 cut(s) 768, 815
BceAI ACGGC 3 cut(s) 5, 248, 1020
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BciT130I CCWGG 1 cut(s) 416
BcoDI GTCTC 1 cut(s) 68
BfaI CTAG 1 cut(s) 902
BfmI CTRYAG 1 cut(s) 450
BisI GCNGC 5 cut(s) 12, 152, 220, 601, 1053
BlsI GCNGC 5 cut(s) 13, 153, 221, 602, 1054
Bme1390I CCNGG 1 cut(s) 416
BmeRI GACNNNNNGTC 1 cut(s) 1032
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 1 cut(s) 952
BmrFI CCNGG 1 cut(s) 416
BmrI ACTGGG 1 cut(s) 621
BmsI GCATC 3 cut(s) 88, 155, 298
BmuI ACTGGG 1 cut(s) 621
BpiI GAAGAC 2 cut(s) 570, 803
BplI GAGNNNNNCTC 2 cut(s) 36, 68
BpmI CTGGAG 1 cut(s) 372
Bpu14I TTCGAA 1 cut(s) 831
BpuEI CTTGAG 1 cut(s) 707
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 40, 414
Bsc4I CCNNNNNNNGG 1 cut(s) 821
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 616
Bse3DI GCAATG 2 cut(s) 199, 229
BseBI CCWGG 1 cut(s) 416
BseDI CCNNGG 2 cut(s) 40, 414
BseGI GGATG 2 cut(s) 103, 170
BseLI CCNNNNNNNGG 1 cut(s) 821
BseMI GCAATG 2 cut(s) 199, 229
BseMII CTCAG 2 cut(s) 804, 846
BseNI ACTGG 1 cut(s) 616
BseXI GCAGC 3 cut(s) 231, 587, 1039
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 3 cut(s) 263, 516, 684
BshNI GGYRCC 1 cut(s) 950
BsiHKAI GWGCWC 1 cut(s) 744
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 1 cut(s) 821
BsmAI GTCTC 1 cut(s) 68
BsmBI CGTCTC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 449
BsmI GAATGC 2 cut(s) 114, 651
BsnI GGCC 3 cut(s) 263, 516, 684
Bsp119I TTCGAA 1 cut(s) 831
Bsp1286I GDGCHC 1 cut(s) 744
BspACI CCGC 5 cut(s) 18, 40, 42, 151, 505
BspANI GGCC 3 cut(s) 263, 516, 684
BspCNI CTCAG 2 cut(s) 803, 847
BspFNI CGCG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 952
BspT104I TTCGAA 1 cut(s) 831
BspT107I GGYRCC 1 cut(s) 950
BsrDI GCAATG 2 cut(s) 199, 229
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 616
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 40, 414
BssNI GRCGYC 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 416
Bst4CI ACNGT 4 cut(s) 62, 71, 802, 848
Bst6I CTCTTC 1 cut(s) 445
BstACI GRCGYC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 118
BstBI TTCGAA 1 cut(s) 831
BstDEI CTNAG 3 cut(s) 444, 790, 855
BstDSI CCRYGG 1 cut(s) 40
BstF5I GGATG 2 cut(s) 103, 170
BstFNI CGCG 1 cut(s) 42
BstHHI GCGC 2 cut(s) 271, 967
BstMAI GTCTC 1 cut(s) 68
BstMWI GCNNNNNNNGC 3 cut(s) 17, 118, 233
BstNI CCWGG 1 cut(s) 416
BstNSI RCATGY 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 414
BstSFI CTRYAG 1 cut(s) 450
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 3 cut(s) 231, 587, 1039
BstV2I GAAGAC 2 cut(s) 570, 803
BsuRI GGCC 3 cut(s) 263, 516, 684
BtgI CCRYGG 1 cut(s) 40
BtgZI GCGATG 1 cut(s) 618
BtsCI GGATG 2 cut(s) 103, 170
CaiI CAGNNNCTG 1 cut(s) 494
CfoI GCGC 2 cut(s) 271, 967
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 1 cut(s) 514
Cfr42I CCGCGG 1 cut(s) 43
Csp6I GTAC 3 cut(s) 138, 844, 1045
CviAII CATG 1 cut(s) 141
CviQI GTAC 3 cut(s) 138, 844, 1045
DdeI CTNAG 3 cut(s) 444, 790, 855
DraI TTTAAA 1 cut(s) 399
DriI GACNNNNNGTC 1 cut(s) 1032
Eam1104I CTCTTC 1 cut(s) 445
Eam1105I GACNNNNNGTC 1 cut(s) 1032
EarI CTCTTC 1 cut(s) 445
EciI GGCGGA 2 cut(s) 7, 520
Ecl136II GAGCTC 1 cut(s) 742
Eco24I GRGCYC 1 cut(s) 744
Eco53kI GAGCTC 1 cut(s) 742
EcoICRI GAGCTC 1 cut(s) 742
EcoO109I RGGNCCY 1 cut(s) 514
EcoRI GAATTC 1 cut(s) 827
EcoRII CCWGG 1 cut(s) 414
EcoT22I ATGCAT 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 744
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 1 cut(s) 144
FaqI GGGAC 1 cut(s) 449
FatI CATG 1 cut(s) 140
Fnu4HI GCNGC 5 cut(s) 12, 152, 220, 601, 1053
FokI GGATG 2 cut(s) 110, 177
FriOI GRGCYC 1 cut(s) 744
Fsp4HI GCNGC 5 cut(s) 12, 152, 220, 601, 1053
FspBI CTAG 1 cut(s) 902
GlaI GCGC 2 cut(s) 270, 966
GluI GCNGC 5 cut(s) 12, 152, 220, 601, 1053
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 3 cut(s) 263, 516, 684
HapII CCGG 1 cut(s) 5
HhaI GCGC 2 cut(s) 271, 967
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 1 cut(s) 144
Hin6I GCGC 2 cut(s) 269, 965
HinP1I GCGC 2 cut(s) 269, 965
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 5 cut(s) 186, 379, 619, 695, 865
HpaII CCGG 1 cut(s) 5
HphI GGTGA 2 cut(s) 403, 836
Hpy166II GTNNAC 2 cut(s) 25, 199
Hpy188I TCNGA 3 cut(s) 107, 793, 878
Hpy188III TCNNGA 3 cut(s) 31, 389, 642
Hpy8I GTNNAC 2 cut(s) 25, 199
Hpy99I CGWCG 2 cut(s) 80, 83
HpyAV CCTTC 3 cut(s) 253, 413, 445
HpyCH4III ACNGT 4 cut(s) 62, 71, 802, 848
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 5 cut(s) 112, 121, 311, 473, 481
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 118, 233
HpyF3I CTNAG 3 cut(s) 444, 790, 855
HpySE526I ACGT 1 cut(s) 78
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 1 cut(s) 144
HspAI GCGC 2 cut(s) 269, 965
KspI CCGCGG 1 cut(s) 43
Lsp1109I GCAGC 3 cut(s) 231, 587, 1039
LweI GCATC 3 cut(s) 88, 155, 298
MaeI CTAG 1 cut(s) 902
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 5 cut(s) 71, 484, 607, 751, 1024
MboII GAAGA 6 cut(s) 317, 432, 570, 628, 808, 860
MhlI GDGCHC 1 cut(s) 744
MlyI GAGTC 1 cut(s) 704
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 8 cut(s) 47, 62, 253, 505, 529, 774, 850, 1039
Mph1103I ATGCAT 1 cut(s) 114
MseI TTAA 5 cut(s) 398, 705, 786, 894, 930
MslI CAYNNNNRTG 1 cut(s) 765
MspA1I CMGCKG 1 cut(s) 42
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 416
Mva1269I GAATGC 2 cut(s) 114, 651
MvaI CCWGG 1 cut(s) 416
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 3 cut(s) 17, 118, 233
NlaIII CATG 1 cut(s) 144
NlaIV GGNNCC 1 cut(s) 952
NmuCI GTSAC 2 cut(s) 71, 1024
NsiI ATGCAT 1 cut(s) 114
NspI RCATGY 1 cut(s) 144
NspV TTCGAA 1 cut(s) 831
PciI ACATGT 1 cut(s) 140
PctI GAATGC 2 cut(s) 114, 651
PfeI GAWTC 4 cut(s) 186, 379, 619, 865
PflFI GACNNNGTC 1 cut(s) 77
PflMI CCANNNNNTGG 1 cut(s) 821
PkrI GCNGC 5 cut(s) 13, 153, 221, 602, 1054
PleI GAGTC 1 cut(s) 703
PpsI GAGTC 1 cut(s) 703
PscI ACATGT 1 cut(s) 140
PsiI TTATAA 1 cut(s) 525
Psp124BI GAGCTC 1 cut(s) 744
Psp6I CCWGG 1 cut(s) 414
PspGI CCWGG 1 cut(s) 414
PspN4I GGNNCC 1 cut(s) 952
PspPI GGNCC 1 cut(s) 514
PstNI CAGNNNCTG 1 cut(s) 494
PsyI GACNNNGTC 1 cut(s) 77
RsaI GTAC 3 cut(s) 139, 845, 1046
RsaNI GTAC 3 cut(s) 138, 844, 1045
RseI CAYNNNNRTG 1 cut(s) 765
SacI GAGCTC 1 cut(s) 744
SacII CCGCGG 1 cut(s) 43
SaqAI TTAA 5 cut(s) 398, 705, 786, 894, 930
SatI GCNGC 5 cut(s) 12, 152, 220, 601, 1053
Sau96I GGNCC 1 cut(s) 514
SchI GAGTC 1 cut(s) 704
ScrFI CCNGG 1 cut(s) 416
SduI GDGCHC 1 cut(s) 744
SfaNI GCATC 3 cut(s) 88, 155, 298
SfcI CTRYAG 1 cut(s) 450
Sfr303I CCGCGG 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 831
SgrBI CCGCGG 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 765
SmlI CTYRAG 1 cut(s) 686
SmoI CTYRAG 1 cut(s) 686
SsiI CCGC 5 cut(s) 18, 40, 42, 151, 505
SspMI CTAG 1 cut(s) 902
SstI GAGCTC 1 cut(s) 744
StyD4I CCNGG 1 cut(s) 414
TaaI ACNGT 4 cut(s) 62, 71, 802, 848
TaiI ACGT 1 cut(s) 81
TaqI TCGA 4 cut(s) 258, 744, 831, 1036
TatI WGTACW 1 cut(s) 1044
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 4 cut(s) 186, 379, 619, 865
Tru1I TTAA 5 cut(s) 398, 705, 786, 894, 930
Tru9I TTAA 5 cut(s) 398, 705, 786, 894, 930
TseFI GTSAC 2 cut(s) 71, 1024
TseI GCWGC 4 cut(s) 11, 219, 600, 1052
Tsp45I GTSAC 2 cut(s) 71, 1024
TspDTI ATGAA 3 cut(s) 318, 641, 854
TspGWI ACGGA 1 cut(s) 861
Tth111I GACNNNGTC 1 cut(s) 77
Van91I CCANNNNNTGG 1 cut(s) 821
XapI RAATTY 4 cut(s) 393, 772, 827, 984
XceI RCATGY 1 cut(s) 144
XspI CTAG 1 cut(s) 902
ZraI GACGTC 1 cut(s) 79
Zsp2I ATGCAT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.