Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009496

Physical Location & Seq

Genomic Coordinates Forward (+)

17193680 .. 17194999

Gene Structure 1320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g25662.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGATGTCTTGCCCCACACTCGCACTTGATACTGCACTTGATCAAAGTGGGGTCAGAATTTCGCCGGAAATAGTAGAGGATGTTCTCGTGAGATTCAAGAATGCTGGGATGGTCGCGTATCGGTTCTTTGAATGGGCAGGGAAGCAGAGGAACTACACGCACAGTGTTAAGGCGTACCATGCTATGATCGATTCTTTGGCCAAGATAAGGCAGTACCAGATCATGTGGGAGCTTGTGAACTCAATGAGGACCCAAAGGATGCAGAATATGGAGACATTTAGTATCATTATGAGGAAGTATGCAAGGGCCCAGAAGGTCGAGGAAGCGCTTTATACGTTTAATGTTATGGAAAAATATGATTGTGCTCCGAACTTAGCGGCATTCAATGACCTGCTTAGTGCTTTATGCAAATCCAAGAATGTGAGGAAGGCTCAGGAGATTTTTGATAAAATGAAGGACCGCTTTGTGCCAGACTCAAAGACGTTTAGTATATTAATTGATGGATGGGGAAAGGATCCGAATTTGCCCAAGGCAAGGGAGGTCTATAGAGAAATGGTTGACGCAGGCTGTATTCCTGATATAGTGACTTATGGTATCATGGTTGATGTTCTGTGCAAAGCAGGGAGGGTGGATGAAGGCATTGAGATTGTTCGGGGCATGGTTGCTAGTGGTTGTATGCCTACATCTTTTATTTATAGTGTTTTGGTGCATACATATGGGGTGGAGGATAGGATTGAAGATGCTGTTGAAGCATTCTTGGAGATGGAAAGGAATGGAATCAAGGCTGATGTAGCCATCTATAATGCCTTGATTGGTGCTTTTTGTAAAGTTAACAAGTTCAAGAACGTGTACAGGGTCTTAAGTGATATGAAATCTAAAGCTGTTGTACCCAATTCAAGGACATGCAATATCATCTTACATAGCTTGATTGACCGTGGAGAAACTGATGAGGCATTTAGTGTCTTTCGTAAAATGATCAAAATATGTGATCCAGATGCAGATACATATACAATGATGATAAAAATGTTCTGCGAGAGAAATAAATTAGAGATGGCAAGCAAACTGTGGAAGTACATGAAGATGAAACAATTTATCCCCAGTATGCATACATATTCAGTCCTTATAAATGGATTGTGTGAAAACGGTAATGCTTCAAAGGCTTGTGTCTTACTGGAAGAGATGGTAGAGAAGGGGATTCGGCCATCAGGTGTGATGTTTGGAAAATTAAGACAGTTGCTTATAAAAGAAGGAAGAGAAGATGTATTGAAATTTCTTCAAGAAAAAATCAATCTCATGGTCAAAGAGCCTTCTTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

440

Amino Acids

50.24

Weight (kDa)

8.56

Isoelectric Point (pI)

30.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	123 - 168	4.5e-11	PPR repeat family
PPR_2	PF13041	157 - 206	2.1e-11	PPR repeat family
PPR_1	PF12854	189 - 221	2.8e-10	PPR repeat
PPR_2	PF13041	192 - 238	3.6e-08	PPR repeat family
PPR	PF01535	195 - 225	8.8e-06	PPR repeat
PPR_long	PF17177	241 - 325	7.3e-07	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	248 - 357	2.3e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	254 - 307	4.2e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	263 - 309	8.9e-13	PPR repeat family
PPR_3	PF13812	285 - 345	5.4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	298 - 344	2.9e-10	PPR repeat family
PPR_long	PF17177	317 - 434	5.8e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	329 - 360	1e-06	PPR repeat
PPR_2	PF13041	331 - 379	7.2e-15	PPR repeat family
PPR_1	PF12854	366 - 395	1.5e-08	PPR repeat
PPR	PF01535	370 - 399	1.7e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0009496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77360 AT1G77360
fragaria_vesca	FvH4_5g25662
malus_domestica	MD05G1026300.v1.1
prunus_persica	Prupe.1G490700_v2.0.a1 Prupe.1G490700_v2.0.a1
pyrus_communis	pycom05g01720 pycom05g01730 pycom05g01820
rosa_chinensis	RchiOBHm_Chr7g0215971 RchiOBHm_Chr7g0216001
rosa_multiflora	Rmu_sc0002356.1_g000012 Rmu_sc0014454.1_g000007 Rmu_sc0014455.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243740
rosa_rugosa	Rorug07G0157400
rosa_samantha	Rh7AG295400 Rh7BG287400 Rh7CG315600 Rh7DG298200
rosa_wichuraiana	Rw7G025090 Rw7G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1124, 1241
Acc36I	ACCTGC	1 cut(s)	399
AccII	CGCG	1 cut(s)	116
AciI	CCGC	2 cut(s)	377, 460
AclWI	GGATC	3 cut(s)	509, 522, 983
AcoI	YGGCCR	2 cut(s)	198, 1199
AcsI	RAATTY	3 cut(s)	57, 520, 1268
AfaI	GTAC	5 cut(s)	176, 215, 851, 888, 1073
AfeI	AGCGCT	1 cut(s)	327
AfiI	CCNNNNNNNGG	3 cut(s)	207, 534, 897
AflII	CTTAAG	1 cut(s)	859
AflIII	ACRYGT	1 cut(s)	846
AluBI	AGCT	3 cut(s)	232, 881, 924
AluI	AGCT	3 cut(s)	232, 881, 924
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	3 cut(s)	509, 522, 983
Aor51HI	AGCGCT	1 cut(s)	327
AoxI	GGCC	3 cut(s)	198, 306, 1199
ApaI	GGGCCC	1 cut(s)	310
ApoI	RAATTY	3 cut(s)	57, 520, 1268
AseI	ATTAAT	1 cut(s)	494
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	4 cut(s)	249, 306, 307, 457
AvaII	GGWCC	2 cut(s)	249, 457
BaeGI	GKGCMC	1 cut(s)	310
BalI	TGGCCA	1 cut(s)	200
BamHI	GGATCC	1 cut(s)	514
BanII	GRGCYC	1 cut(s)	310
BauI	CACGAG	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	367
BccI	CCATC	8 cut(s)	103, 494, 498, 757, 803, 1045, 1174, 1210
BclI	TGATCA	2 cut(s)	40, 975
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	666
BfmI	CTRYAG	1 cut(s)	544
BfoI	RGCGCY	1 cut(s)	329
BfrI	CTTAAG	1 cut(s)	859
BfuAI	ACCTGC	1 cut(s)	399
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme18I	GGWCC	2 cut(s)	249, 457
BmgT120I	GGNCC	4 cut(s)	249, 306, 307, 457
BmiI	GGNNCC	3 cut(s)	251, 308, 516
BmrI	ACTGGG	1 cut(s)	1092
BmsI	GCATC	3 cut(s)	249, 730, 985
BmuI	ACTGGG	1 cut(s)	1092
BplI	GAGNNNNNCTC	2 cut(s)	415, 447
Bpu10I	CCTNAGC	1 cut(s)	432
Bsa29I	ATCGAT	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	528, 934
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 534, 897
Bse1I	ACTGG	2 cut(s)	1098, 1176
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	528, 934
BseGI	GGATG	5 cut(s)	85, 114, 264, 509, 637
BseLI	CCNNNNNNNGG	3 cut(s)	207, 534, 897
BseMII	CTCAG	1 cut(s)	446
BseNI	ACTGG	2 cut(s)	1098, 1176
BseSI	GKGCMC	1 cut(s)	310
BseYI	CCCAGC	1 cut(s)	104
BsgI	GTGCAG	1 cut(s)	18
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	3 cut(s)	200, 308, 1201
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	367
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	3 cut(s)	207, 534, 897
BsmAI	GTCTC	1 cut(s)	266
BsmI	GAATGC	3 cut(s)	106, 380, 752
BsnI	GGCC	3 cut(s)	200, 308, 1201
Bsp120I	GGGCCC	1 cut(s)	306
Bsp1286I	GDGCHC	2 cut(s)	310, 367
Bsp1407I	TGTACA	1 cut(s)	849
Bsp143I	GATC	6 cut(s)	40, 186, 219, 514, 975, 988
BspACI	CCGC	2 cut(s)	377, 460
BspANI	GGCC	3 cut(s)	200, 308, 1201
BspCNI	CTCAG	1 cut(s)	445
BspDI	ATCGAT	1 cut(s)	189
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	3 cut(s)	251, 308, 516
BspMI	ACCTGC	1 cut(s)	399
BspPI	GGATC	3 cut(s)	509, 522, 983
BspTI	CTTAAG	1 cut(s)	859
BsrGI	TGTACA	1 cut(s)	849
BsrI	ACTGG	2 cut(s)	1098, 1176
BssECI	CCNNGG	2 cut(s)	528, 934
BssMI	GATC	6 cut(s)	40, 186, 219, 514, 975, 988
BssSI	CACGAG	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	86
Bst4CI	ACNGT	5 cut(s)	164, 935, 1065, 1145, 1233
Bst6I	CTCTTC	2 cut(s)	1170, 1246
BstAFI	CTTAAG	1 cut(s)	859
BstAUI	TGTACA	1 cut(s)	849
BstC8I	GCNNGC	2 cut(s)	565, 1057
BstDEI	CTNAG	3 cut(s)	373, 395, 432
BstDSI	CCRYGG	1 cut(s)	934
BstF5I	GGATG	5 cut(s)	85, 114, 264, 509, 637
BstFNI	CGCG	1 cut(s)	116
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	6 cut(s)	43, 189, 222, 517, 978, 991
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	6 cut(s)	40, 186, 219, 514, 975, 988
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 749, 791, 1157
BstNSI	RCATGY	1 cut(s)	906
BstSFI	CTRYAG	1 cut(s)	544
BstSLI	GKGCMC	1 cut(s)	310
BstUI	CGCG	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
Bsu15I	ATCGAT	1 cut(s)	189
BsuRI	GGCC	3 cut(s)	200, 308, 1201
BsuTUI	ATCGAT	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	934
BtsCI	GGATG	5 cut(s)	85, 114, 264, 509, 637
BtsIMutI	CAGTG	1 cut(s)	169
BveI	ACCTGC	1 cut(s)	399
Cac8I	GCNNGC	2 cut(s)	565, 1057
CfoI	GCGC	1 cut(s)	328
Cfr13I	GGNCC	4 cut(s)	249, 306, 307, 457
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	5 cut(s)	175, 214, 850, 887, 1072
CviAII	CATG	7 cut(s)	179, 223, 598, 658, 903, 1075, 1294
CviQI	GTAC	5 cut(s)	175, 214, 850, 887, 1072
DdeI	CTNAG	3 cut(s)	373, 395, 432
DpnI	GATC	6 cut(s)	42, 188, 221, 516, 977, 990
DpnII	GATC	6 cut(s)	40, 186, 219, 514, 975, 988
EaeI	YGGCCR	2 cut(s)	198, 1199
Eam1104I	CTCTTC	2 cut(s)	1170, 1246
EarI	CTCTTC	2 cut(s)	1170, 1246
Eco130I	CCWWGG	1 cut(s)	528
Eco24I	GRGCYC	1 cut(s)	310
Eco47I	GGWCC	2 cut(s)	249, 457
Eco47III	AGCGCT	1 cut(s)	327
EcoO109I	RGGNCCY	2 cut(s)	249, 306
EcoT14I	CCWWGG	1 cut(s)	528
EcoT22I	ATGCAT	1 cut(s)	1107
EcoT38I	GRGCYC	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	7 cut(s)	182, 226, 601, 661, 906, 1078, 1297
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FatI	CATG	7 cut(s)	178, 222, 597, 657, 902, 1074, 1293
FauNDI	CATATG	1 cut(s)	715
FbaI	TGATCA	2 cut(s)	40, 975
Fnu4HI	GCNGC	1 cut(s)	378
FokI	GGATG	5 cut(s)	92, 121, 271, 516, 644
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	1 cut(s)	378
FspBI	CTAG	1 cut(s)	666
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	1 cut(s)	378
GsaI	CCCAGC	1 cut(s)	108
HaeII	RGCGCY	1 cut(s)	329
HaeIII	GGCC	3 cut(s)	200, 308, 1201
HapII	CCGG	1 cut(s)	65
HgaI	GACGC	1 cut(s)	569
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	7 cut(s)	182, 226, 601, 661, 906, 1078, 1297
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HincII	GTYRAC	2 cut(s)	559, 832
HindII	GTYRAC	2 cut(s)	559, 832
HinfI	GANTC	5 cut(s)	93, 191, 473, 777, 1195
HpaI	GTTAAC	1 cut(s)	832
HpaII	CCGG	1 cut(s)	65
Hpy166II	GTNNAC	4 cut(s)	238, 559, 832, 850
Hpy188I	TCNGA	3 cut(s)	56, 369, 519
Hpy188III	TCNNGA	7 cut(s)	88, 97, 434, 575, 841, 992, 1277
Hpy8I	GTNNAC	4 cut(s)	238, 559, 832, 850
HpyAV	CCTTC	7 cut(s)	307, 421, 448, 629, 1183, 1241, 1317
HpyCH4III	ACNGT	5 cut(s)	164, 935, 1065, 1145, 1233
HpyCH4IV	ACGT	3 cut(s)	335, 482, 846
HpyCH4V	TGCA	9 cut(s)	35, 262, 302, 408, 615, 709, 906, 998, 1105
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 749, 791, 1157
HpyF3I	CTNAG	3 cut(s)	373, 395, 432
HpySE526I	ACGT	3 cut(s)	335, 482, 846
Hsp92II	CATG	7 cut(s)	182, 226, 601, 661, 906, 1078, 1297
HspAI	GCGC	1 cut(s)	326
Ksp22I	TGATCA	2 cut(s)	40, 975
KspAI	GTTAAC	1 cut(s)	832
Kzo9I	GATC	6 cut(s)	40, 186, 219, 514, 975, 988
LmnI	GCTCC	2 cut(s)	229, 370
LweI	GCATC	3 cut(s)	249, 730, 985
MaeI	CTAG	1 cut(s)	666
MaeII	ACGT	3 cut(s)	335, 482, 846
MaeIII	GTNAC	1 cut(s)	583
MalI	GATC	6 cut(s)	42, 188, 221, 516, 977, 990
MboI	GATC	6 cut(s)	40, 186, 219, 514, 975, 988
MboII	GAAGA	6 cut(s)	749, 1090, 1187, 1263, 1265, 1268
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	2 cut(s)	310, 367
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	8 cut(s)	57, 495, 520, 892, 1043, 1088, 1223, 1268
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	1 cut(s)	467
Mox20I	TGGCCA	1 cut(s)	200
Mph1103I	ATGCAT	1 cut(s)	1107
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	6 cut(s)	168, 339, 494, 831, 860, 1226
MslI	CAYNNNNRTG	2 cut(s)	714, 1079
Msp20I	TGGCCA	1 cut(s)	200
MspCI	CTTAAG	1 cut(s)	859
MspI	CCGG	1 cut(s)	65
Mva1269I	GAATGC	3 cut(s)	106, 380, 752
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	4 cut(s)	179, 749, 791, 1157
NdeI	CATATG	1 cut(s)	715
NdeII	GATC	6 cut(s)	40, 186, 219, 514, 975, 988
NlaIII	CATG	7 cut(s)	182, 226, 601, 661, 906, 1078, 1297
NlaIV	GGNNCC	3 cut(s)	251, 308, 516
NmuCI	GTSAC	1 cut(s)	583
NsiI	ATGCAT	1 cut(s)	1107
NspI	RCATGY	1 cut(s)	906
PctI	GAATGC	3 cut(s)	106, 380, 752
PfeI	GAWTC	4 cut(s)	93, 191, 777, 1195
PkrI	GCNGC	1 cut(s)	379
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
PpuMI	RGGWCCY	1 cut(s)	249
PshBI	ATTAAT	1 cut(s)	494
PsiI	TTATAA	2 cut(s)	1124, 1241
Psp5II	RGGWCCY	1 cut(s)	249
PspFI	CCCAGC	1 cut(s)	104
PspN4I	GGNNCC	3 cut(s)	251, 308, 516
PspOMI	GGGCCC	1 cut(s)	306
PspPI	GGNCC	4 cut(s)	249, 306, 307, 457
PspPPI	RGGWCCY	1 cut(s)	249
PsrI	GAACNNNNNNTAC	2 cut(s)	66, 98
PsuI	RGATCY	1 cut(s)	514
RsaI	GTAC	5 cut(s)	176, 215, 851, 888, 1073
RsaNI	GTAC	5 cut(s)	175, 214, 850, 887, 1072
RseI	CAYNNNNRTG	2 cut(s)	714, 1079
SaqAI	TTAA	6 cut(s)	168, 339, 494, 831, 860, 1226
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	6 cut(s)	40, 186, 219, 514, 975, 988
Sau96I	GGNCC	4 cut(s)	249, 306, 307, 457
SchI	GAGTC	1 cut(s)	467
SduI	GDGCHC	2 cut(s)	310, 367
SfaNI	GCATC	3 cut(s)	249, 730, 985
SfcI	CTRYAG	1 cut(s)	544
SinI	GGWCC	2 cut(s)	249, 457
SmiMI	CAYNNNNRTG	2 cut(s)	714, 1079
SmlI	CTYRAG	1 cut(s)	859
SmoI	CTYRAG	1 cut(s)	859
Sse9I	AATT	8 cut(s)	57, 495, 520, 892, 1043, 1088, 1223, 1268
SsiI	CCGC	2 cut(s)	377, 460
SspMI	CTAG	1 cut(s)	666
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	5 cut(s)	164, 935, 1065, 1145, 1233
TaiI	ACGT	3 cut(s)	338, 485, 849
TaqI	TCGA	2 cut(s)	189, 318
TasI	AATT	8 cut(s)	57, 495, 520, 892, 1043, 1088, 1223, 1268
TatI	WGTACW	2 cut(s)	849, 1071
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	4 cut(s)	93, 191, 777, 1195
Tru1I	TTAA	6 cut(s)	168, 339, 494, 831, 860, 1226
Tru9I	TTAA	6 cut(s)	168, 339, 494, 831, 860, 1226
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	1 cut(s)	583
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	5 cut(s)	467, 648, 884, 1091, 1097
TspRI	CASTG	1 cut(s)	169
Vha464I	CTTAAG	1 cut(s)	859
VpaK11BI	GGWCC	2 cut(s)	249, 457
VspI	ATTAAT	1 cut(s)	494
XapI	RAATTY	3 cut(s)	57, 520, 1268
XceI	RCATGY	1 cut(s)	906
XspI	CTAG	1 cut(s)	666
Zsp2I	ATGCAT	1 cut(s)	1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.