Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002356.1

Orthogroup ID

OG0009496

Physical Location & Seq

Genomic Coordinates Reverse (-)

62351 .. 63277

Gene Structure 927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002356.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atgatgtcttgccccacactcatacttgatactgcccttgatcaaagtgggctcagaatttcacctgaaatagtagaggatgttctcgtgagattcaagaatgccggaatggttgcataccgcttctttgaatgggcagcgaagcagcgaaactacacgcatagtgttaaggcataccatgctatgattgattctttggcaaagataaggcagtaccagatcatgtgggagcttgtgaactcaatgaggacccaaaggatgcagaatatggagacatttggtatcattatgaggaagtatgccagggctcagaaggttgaggaagcgatttatacttttaatgttatggagaagtatgattgtgctccgaatttagcagcattcaatggcctgctgagtgctttctgcaaatccaagaatgtgaggaaggctcaggagatttttgataaaatgaaggatcgctttgagccagactcaaatacgtatagtatattaattgatggatggggaaaggatccgaatttgcccaaggcaagggaggtctttagagaaatggttgatgctggctgtaatcctgatatagtgacttatggtatcatggttgatgttctgtgcaaagcagggagggtggacgaagccattgagattgttcggggcatggatgctagtggttgtatgcctacatcttttatttacagtgttttggtgcatacatatggggtggaaaataggattgaagacgctgttgaagcattcttggagatggaaaggaatggaatcaaggctgatgtagccttctataatgccttgattggtgctttttgtaaagttaacaagttcaagaatgtgtggagggtcttaaatgatatgacttccaaaggtgttacaggcttacagccaattcaaggacctgcaatatcatcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

308

Amino Acids

34.96

Weight (kDa)

7.53

Isoelectric Point (pI)

28.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77360 AT1G77360
fragaria_vesca	FvH4_5g25662
malus_domestica	MD05G1026300.v1.1
prunus_persica	Prupe.1G490700_v2.0.a1 Prupe.1G490700_v2.0.a1
pyrus_communis	pycom05g01720 pycom05g01730 pycom05g01820
rosa_chinensis	RchiOBHm_Chr7g0215971 RchiOBHm_Chr7g0216001
rosa_multiflora	Rmu_sc0002356.1_g000012 Rmu_sc0014454.1_g000007 Rmu_sc0014455.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243740
rosa_rugosa	Rorug07G0157400
rosa_samantha	Rh7AG295400 Rh7BG287400 Rh7CG315600 Rh7DG298200
rosa_wichuraiana	Rw7G025090 Rw7G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	919
AciI	CCGC	1 cut(s)	121
AclWI	GGATC	3 cut(s)	465, 509, 522
AcsI	RAATTY	3 cut(s)	57, 370, 520
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	534, 905
AgsI	TTSAA	7 cut(s)	97, 131, 385, 737, 749, 841, 905
AjnI	CCWGG	1 cut(s)	302
AluBI	AGCT	1 cut(s)	232
AluI	AGCT	1 cut(s)	232
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	3 cut(s)	465, 509, 522
AoxI	GGCC	1 cut(s)	388
ApeKI	GCWGC	3 cut(s)	137, 145, 377
ApoI	RAATTY	3 cut(s)	57, 370, 520
AseI	ATTAAT	1 cut(s)	494
AspS9I	GGNCC	2 cut(s)	249, 908
AsuHPI	GGTGA	1 cut(s)	54
AvaII	GGWCC	2 cut(s)	249, 908
BamHI	GGATCC	1 cut(s)	514
BanII	GRGCYC	2 cut(s)	54, 310
BauI	CACGAG	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	744
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	3 cut(s)	149, 157, 389
BccI	CCATC	3 cut(s)	494, 498, 757
BciT130I	CCWGG	1 cut(s)	304
BclI	TGATCA	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	666
BfuAI	ACCTGC	1 cut(s)	919
BisI	GCNGC	3 cut(s)	138, 146, 378
BlsI	GCNGC	3 cut(s)	139, 147, 379
Bme1390I	CCNGG	1 cut(s)	304
Bme18I	GGWCC	2 cut(s)	249, 908
BmgT120I	GGNCC	2 cut(s)	249, 908
BmiI	GGNNCC	2 cut(s)	251, 516
BmrFI	CCNGG	1 cut(s)	304
BmsI	GCATC	3 cut(s)	249, 550, 652
BpiI	GAAGAC	1 cut(s)	744
BplI	GAGNNNNNCTC	4 cut(s)	415, 447, 458, 490
Bpu10I	CCTNAGC	1 cut(s)	432
BsaAI	YACGTR	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	303, 528
Bsc4I	CCNNNNNNNGG	2 cut(s)	534, 905
BseBI	CCWGG	1 cut(s)	304
BseDI	CCNNGG	2 cut(s)	303, 528
BseGI	GGATG	4 cut(s)	85, 264, 509, 667
BseLI	CCNNNNNNNGG	2 cut(s)	534, 905
BseMII	CTCAG	4 cut(s)	67, 323, 386, 446
BseXI	GCAGC	3 cut(s)	149, 157, 389
BshFI	GGCC	1 cut(s)	390
BsiHKAI	GWGCWC	1 cut(s)	367
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	2 cut(s)	534, 905
BsmAI	GTCTC	1 cut(s)	266
BsmI	GAATGC	3 cut(s)	106, 380, 752
BsnI	GGCC	1 cut(s)	390
Bsp1286I	GDGCHC	3 cut(s)	54, 310, 367
Bsp143I	GATC	4 cut(s)	40, 219, 457, 514
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	390
BspCNI	CTCAG	4 cut(s)	66, 322, 387, 445
BspLI	GGNNCC	2 cut(s)	251, 516
BspMI	ACCTGC	1 cut(s)	919
BspPI	GGATC	3 cut(s)	465, 509, 522
BssECI	CCNNGG	2 cut(s)	303, 528
BssMI	GATC	4 cut(s)	40, 219, 457, 514
BssSI	CACGAG	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	304
Bst4CI	ACNGT	1 cut(s)	698
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstBAI	YACGTR	1 cut(s)	483
BstC8I	GCNNGC	2 cut(s)	392, 565
BstDEI	CTNAG	4 cut(s)	53, 309, 395, 432
BstF5I	GGATG	4 cut(s)	85, 264, 509, 667
BstKTI	GATC	4 cut(s)	43, 222, 460, 517
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	4 cut(s)	40, 219, 457, 514
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 749, 791
BstNI	CCWGG	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	302
BstSNI	TACGTA	1 cut(s)	483
BstV1I	GCAGC	3 cut(s)	149, 157, 389
BstV2I	GAAGAC	1 cut(s)	744
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	1 cut(s)	390
BtsCI	GGATG	4 cut(s)	85, 264, 509, 667
BtsIMutI	CAGTG	1 cut(s)	703
BveI	ACCTGC	1 cut(s)	919
Cac8I	GCNNGC	2 cut(s)	392, 565
Cfr13I	GGNCC	2 cut(s)	249, 908
CseI	GACGC	1 cut(s)	749
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	4 cut(s)	179, 223, 598, 658
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	4 cut(s)	53, 309, 395, 432
DpnI	GATC	4 cut(s)	42, 221, 459, 516
DpnII	GATC	4 cut(s)	40, 219, 457, 514
Eco105I	TACGTA	1 cut(s)	483
Eco130I	CCWWGG	1 cut(s)	528
Eco24I	GRGCYC	2 cut(s)	54, 310
Eco47I	GGWCC	2 cut(s)	249, 908
EcoO109I	RGGNCCY	2 cut(s)	249, 908
EcoRII	CCWGG	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	528
EcoT38I	GRGCYC	2 cut(s)	54, 310
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	4 cut(s)	182, 226, 601, 661
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FatI	CATG	4 cut(s)	178, 222, 597, 657
FauNDI	CATATG	1 cut(s)	715
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	3 cut(s)	138, 146, 378
FokI	GGATG	4 cut(s)	92, 271, 516, 674
FriOI	GRGCYC	2 cut(s)	54, 310
Fsp4HI	GCNGC	3 cut(s)	138, 146, 378
FspBI	CTAG	1 cut(s)	666
GluI	GCNGC	3 cut(s)	138, 146, 378
HaeIII	GGCC	1 cut(s)	390
HapII	CCGG	1 cut(s)	105
HgaI	GACGC	1 cut(s)	749
Hin1II	CATG	4 cut(s)	182, 226, 601, 661
HincII	GTYRAC	1 cut(s)	832
HindII	GTYRAC	1 cut(s)	832
HinfI	GANTC	4 cut(s)	93, 191, 473, 777
HpaI	GTTAAC	1 cut(s)	832
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	1 cut(s)	54
Hpy166II	GTNNAC	3 cut(s)	238, 631, 832
Hpy188I	TCNGA	4 cut(s)	56, 312, 369, 519
Hpy188III	TCNNGA	6 cut(s)	88, 97, 434, 575, 841, 924
Hpy8I	GTNNAC	3 cut(s)	238, 631, 832
HpyAV	CCTTC	4 cut(s)	307, 421, 448, 805
HpyCH4III	ACNGT	1 cut(s)	698
HpyCH4IV	ACGT	1 cut(s)	482
HpyCH4V	TGCA	6 cut(s)	116, 262, 408, 615, 709, 914
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 749, 791
HpyF3I	CTNAG	4 cut(s)	53, 309, 395, 432
HpySE526I	ACGT	1 cut(s)	482
Hsp92II	CATG	4 cut(s)	182, 226, 601, 661
Ksp22I	TGATCA	1 cut(s)	40
KspAI	GTTAAC	1 cut(s)	832
Kzo9I	GATC	4 cut(s)	40, 219, 457, 514
LmnI	GCTCC	2 cut(s)	229, 370
Lsp1109I	GCAGC	3 cut(s)	149, 157, 389
LweI	GCATC	3 cut(s)	249, 550, 652
MaeI	CTAG	1 cut(s)	666
MaeII	ACGT	1 cut(s)	482
MaeIII	GTNAC	2 cut(s)	583, 883
MalI	GATC	4 cut(s)	42, 221, 459, 516
MboI	GATC	4 cut(s)	40, 219, 457, 514
MboII	GAAGA	1 cut(s)	749
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	3 cut(s)	54, 310, 367
MluCI	AATT	5 cut(s)	57, 370, 495, 520, 900
MlyI	GAGTC	1 cut(s)	467
MnlI	CCTC	8 cut(s)	70, 240, 285, 313, 417, 532, 618, 846
MseI	TTAA	5 cut(s)	168, 339, 494, 831, 860
MslI	CAYNNNNRTG	1 cut(s)	714
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	304
Mva1269I	GAATGC	3 cut(s)	106, 380, 752
MvaI	CCWGG	1 cut(s)	304
MwoI	GCNNNNNNNGC	3 cut(s)	179, 749, 791
NdeI	CATATG	1 cut(s)	715
NdeII	GATC	4 cut(s)	40, 219, 457, 514
NlaIII	CATG	4 cut(s)	182, 226, 601, 661
NlaIV	GGNNCC	2 cut(s)	251, 516
NmuCI	GTSAC	1 cut(s)	583
PctI	GAATGC	3 cut(s)	106, 380, 752
PfeI	GAWTC	3 cut(s)	93, 191, 777
PkrI	GCNGC	3 cut(s)	139, 147, 379
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
Ppu21I	YACGTR	1 cut(s)	483
PpuMI	RGGWCCY	2 cut(s)	249, 908
PshBI	ATTAAT	1 cut(s)	494
Psp5II	RGGWCCY	2 cut(s)	249, 908
Psp6I	CCWGG	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	302
PspN4I	GGNNCC	2 cut(s)	251, 516
PspPI	GGNCC	2 cut(s)	249, 908
PspPPI	RGGWCCY	2 cut(s)	249, 908
PsrI	GAACNNNNNNTAC	2 cut(s)	66, 98
PsuI	RGATCY	1 cut(s)	514
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	714
SaqAI	TTAA	5 cut(s)	168, 339, 494, 831, 860
SatI	GCNGC	3 cut(s)	138, 146, 378
Sau3AI	GATC	4 cut(s)	40, 219, 457, 514
Sau96I	GGNCC	2 cut(s)	249, 908
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	1 cut(s)	304
SduI	GDGCHC	3 cut(s)	54, 310, 367
SetI	ASST	7 cut(s)	67, 234, 318, 485, 543, 883, 913
SfaNI	GCATC	3 cut(s)	249, 550, 652
SinI	GGWCC	2 cut(s)	249, 908
SmiMI	CAYNNNNRTG	1 cut(s)	714
SnaBI	TACGTA	1 cut(s)	483
Sse9I	AATT	5 cut(s)	57, 370, 495, 520, 900
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	1 cut(s)	666
StyD4I	CCNGG	1 cut(s)	302
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	1 cut(s)	698
TaiI	ACGT	1 cut(s)	485
TasI	AATT	5 cut(s)	57, 370, 495, 520, 900
TfiI	GAWTC	3 cut(s)	93, 191, 777
Tru1I	TTAA	5 cut(s)	168, 339, 494, 831, 860
Tru9I	TTAA	5 cut(s)	168, 339, 494, 831, 860
TscAI	CASTG	1 cut(s)	703
TseFI	GTSAC	1 cut(s)	583
TseI	GCWGC	3 cut(s)	137, 145, 377
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	1 cut(s)	467
TspRI	CASTG	1 cut(s)	703
VpaK11BI	GGWCC	2 cut(s)	249, 908
VspI	ATTAAT	1 cut(s)	494
XapI	RAATTY	3 cut(s)	57, 370, 520
XspI	CTAG	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.