Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009496

Physical Location & Seq

Genomic Coordinates Forward (+)

33677276 .. 33679103

Gene Structure 1828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19326

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGATCATCAAGATACAGAGCTGTGGAGAAAAATTGGGTTTTCAATGGATGATGCTCTCCCGAAATTACTGTTCAAGTGAAGCAACAAGGCACATTACTGATCCAACCAAAACAATATGCAAAATCATGATGTCTTGCCCCACACTCACACTTGATACTGCCCTTGATCAAAGTGGGGTCAGAATTTCACCTGAAATAGTAGAGGATGTTCTCGTGAGATTCAAGAATGCCGGAATGGTTGCATACCGCTTCTTTGAATGGGCAGCGAAGCAGCAAAACTACACGCATAGTGTTAAGGCATACCATGCTATGATCGATTCTTTGGCCAAGTTAAGGCAGTACCAGATCATGTGGGAGCTTCTGAACTCAATGAGGACCCAAAGGATGCAGAATATGGAGACATTTGGTATCATTATGAGGAAGTATGCCAGGGCTCAGAAGGTTGAGGAAGCGATTTATACTTTTAATGTTATGGAGAAGTATGATTGTGCTCCGAATTTAGCAGCATTCAATGGCCTGCTGAGTGCTTTGTGCAAGTCCAAGAATGTGAGGAAGGCTCAGGAGATTTTTGATAAAATGAAGGATCGCTTTGAGCCAGACTCAATACGTATAGTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

206

Amino Acids

24.01

Weight (kDa)

9.19

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	133 - 179	1.1e-08	PPR repeat family
PPR_1	PF12854	162 - 194	4.1e-07	PPR repeat
PPR_2	PF13041	165 - 197	2.3e-06	PPR repeat family
PPR	PF01535	169 - 196	8.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77360 AT1G77360
fragaria_vesca	FvH4_5g25662
malus_domestica	MD05G1026300.v1.1
prunus_persica	Prupe.1G490700_v2.0.a1 Prupe.1G490700_v2.0.a1
pyrus_communis	pycom05g01720 pycom05g01730 pycom05g01820
rosa_chinensis	RchiOBHm_Chr7g0215971 RchiOBHm_Chr7g0216001
rosa_multiflora	Rmu_sc0002356.1_g000012 Rmu_sc0014454.1_g000007 Rmu_sc0014455.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243740
rosa_rugosa	Rorug07G0157400
rosa_samantha	Rh7AG295400 Rh7BG287400 Rh7CG315600 Rh7DG298200
rosa_wichuraiana	Rw7G025090 Rw7G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	247
AclWI	GGATC	2 cut(s)	95, 591
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	2 cut(s)	183, 496
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	333
AgsI	TTSAA	5 cut(s)	44, 75, 223, 257, 511
AjnI	CCWGG	1 cut(s)	428
AluBI	AGCT	2 cut(s)	21, 358
AluI	AGCT	2 cut(s)	21, 358
Alw21I	GWGCWC	1 cut(s)	493
Alw26I	GTCTC	1 cut(s)	392
AlwI	GGATC	2 cut(s)	95, 591
AoxI	GGCC	2 cut(s)	324, 514
ApeKI	GCWGC	3 cut(s)	263, 271, 503
ApoI	RAATTY	2 cut(s)	183, 496
AspS9I	GGNCC	1 cut(s)	375
AsuHPI	GGTGA	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	375
BalI	TGGCCA	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	436
BauI	CACGAG	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	3 cut(s)	275, 283, 515
BciT130I	CCWGG	1 cut(s)	430
BclI	TGATCA	2 cut(s)	3, 166
BcoDI	GTCTC	1 cut(s)	392
BisI	GCNGC	3 cut(s)	264, 272, 504
BlsI	GCNGC	3 cut(s)	265, 273, 505
Bme1390I	CCNGG	1 cut(s)	430
Bme18I	GGWCC	1 cut(s)	375
BmgT120I	GGNCC	1 cut(s)	375
BmiI	GGNNCC	1 cut(s)	377
BmrFI	CCNGG	1 cut(s)	430
BmsI	GCATC	2 cut(s)	42, 375
BplI	GAGNNNNNCTC	4 cut(s)	541, 573, 584, 616
Bpu10I	CCTNAGC	1 cut(s)	558
Bsa29I	ATCGAT	1 cut(s)	315
BsaAI	YACGTR	1 cut(s)	608
BsaJI	CCNNGG	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	430
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	3 cut(s)	54, 211, 390
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMII	CTCAG	3 cut(s)	449, 512, 572
BseXI	GCAGC	3 cut(s)	275, 283, 515
BshFI	GGCC	2 cut(s)	326, 516
BshVI	ATCGAT	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	493
BsiSI	CCGG	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	333
BsmAI	GTCTC	1 cut(s)	392
BsmI	GAATGC	2 cut(s)	232, 506
BsnI	GGCC	2 cut(s)	326, 516
Bsp1286I	GDGCHC	2 cut(s)	436, 493
Bsp143I	GATC	6 cut(s)	3, 100, 166, 312, 345, 583
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	2 cut(s)	326, 516
BspCNI	CTCAG	3 cut(s)	448, 513, 571
BspDI	ATCGAT	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	377
BspPI	GGATC	2 cut(s)	95, 591
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	6 cut(s)	3, 100, 166, 312, 345, 583
BssSI	CACGAG	1 cut(s)	212
Bst2BI	CACGAG	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	430
Bst4CI	ACNGT	1 cut(s)	71
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstBAI	YACGTR	1 cut(s)	608
BstC8I	GCNNGC	1 cut(s)	518
BstDEI	CTNAG	3 cut(s)	435, 521, 558
BstF5I	GGATG	3 cut(s)	54, 211, 390
BstKTI	GATC	6 cut(s)	6, 103, 169, 315, 348, 586
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	6 cut(s)	3, 100, 166, 312, 345, 583
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNI	CCWGG	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	428
BstSNI	TACGTA	1 cut(s)	608
BstV1I	GCAGC	3 cut(s)	275, 283, 515
Bsu15I	ATCGAT	1 cut(s)	315
BsuRI	GGCC	2 cut(s)	326, 516
BsuTUI	ATCGAT	1 cut(s)	315
BtsCI	GGATG	3 cut(s)	54, 211, 390
Cac8I	GCNNGC	1 cut(s)	518
CciI	TCATGA	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	375
ClaI	ATCGAT	1 cut(s)	315
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	3 cut(s)	127, 305, 349
CviJI	RGCY	7 cut(s)	21, 326, 358, 434, 516, 557, 595
CviKI_1	RGCY	7 cut(s)	21, 326, 358, 434, 516, 557, 595
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	3 cut(s)	435, 521, 558
DpnI	GATC	6 cut(s)	5, 102, 168, 314, 347, 585
DpnII	GATC	6 cut(s)	3, 100, 166, 312, 345, 583
EaeI	YGGCCR	1 cut(s)	324
Eco105I	TACGTA	1 cut(s)	608
Eco24I	GRGCYC	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	428
EcoT38I	GRGCYC	1 cut(s)	436
FaeI	CATG	3 cut(s)	130, 308, 352
FalI	AAGNNNNNCTT	2 cut(s)	572, 604
FatI	CATG	3 cut(s)	126, 304, 348
FbaI	TGATCA	2 cut(s)	3, 166
Fnu4HI	GCNGC	3 cut(s)	264, 272, 504
FokI	GGATG	3 cut(s)	61, 218, 397
FriOI	GRGCYC	1 cut(s)	436
Fsp4HI	GCNGC	3 cut(s)	264, 272, 504
GluI	GCNGC	3 cut(s)	264, 272, 504
HaeIII	GGCC	2 cut(s)	326, 516
HapII	CCGG	1 cut(s)	231
Hin1II	CATG	3 cut(s)	130, 308, 352
HinfI	GANTC	3 cut(s)	219, 317, 599
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	1 cut(s)	180
Hpy188I	TCNGA	4 cut(s)	182, 363, 438, 495
Hpy188III	TCNNGA	6 cut(s)	10, 60, 127, 214, 223, 560
HpyAV	CCTTC	3 cut(s)	433, 547, 574
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	607
HpyCH4V	TGCA	4 cut(s)	120, 242, 388, 534
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	3 cut(s)	435, 521, 558
HpySE526I	ACGT	1 cut(s)	607
Hsp92II	CATG	3 cut(s)	130, 308, 352
Ksp22I	TGATCA	2 cut(s)	3, 166
Kzo9I	GATC	6 cut(s)	3, 100, 166, 312, 345, 583
LmnI	GCTCC	2 cut(s)	355, 496
LpnPI	CCDG	8 cut(s)	204, 244, 356, 415, 442, 530, 545, 609
Lsp1109I	GCAGC	3 cut(s)	275, 283, 515
LweI	GCATC	2 cut(s)	42, 375
MaeII	ACGT	1 cut(s)	607
MalI	GATC	6 cut(s)	5, 102, 168, 314, 347, 585
MboI	GATC	6 cut(s)	3, 100, 166, 312, 345, 583
MhlI	GDGCHC	2 cut(s)	436, 493
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	4 cut(s)	32, 64, 183, 496
MluNI	TGGCCA	1 cut(s)	326
MlyI	GAGTC	1 cut(s)	593
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	5 cut(s)	196, 366, 411, 439, 543
Mox20I	TGGCCA	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	4 cut(s)	294, 332, 465, 619
Msp20I	TGGCCA	1 cut(s)	326
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	430
Mva1269I	GAATGC	2 cut(s)	232, 506
MvaI	CCWGG	1 cut(s)	430
MwoI	GCNNNNNNNGC	1 cut(s)	305
NdeII	GATC	6 cut(s)	3, 100, 166, 312, 345, 583
NlaIII	CATG	3 cut(s)	130, 308, 352
NlaIV	GGNNCC	1 cut(s)	377
PagI	TCATGA	1 cut(s)	126
PctI	GAATGC	2 cut(s)	232, 506
PfeI	GAWTC	2 cut(s)	219, 317
PkrI	GCNGC	3 cut(s)	265, 273, 505
PleI	GAGTC	1 cut(s)	593
PpsI	GAGTC	1 cut(s)	593
Ppu21I	YACGTR	1 cut(s)	608
PpuMI	RGGWCCY	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	375
Psp6I	CCWGG	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	428
PspN4I	GGNNCC	1 cut(s)	377
PspPI	GGNCC	1 cut(s)	375
PspPPI	RGGWCCY	1 cut(s)	375
PsrI	GAACNNNNNNTAC	2 cut(s)	192, 224
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SaqAI	TTAA	4 cut(s)	294, 332, 465, 619
SatI	GCNGC	3 cut(s)	264, 272, 504
Sau3AI	GATC	6 cut(s)	3, 100, 166, 312, 345, 583
Sau96I	GGNCC	1 cut(s)	375
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	1 cut(s)	430
SduI	GDGCHC	2 cut(s)	436, 493
SetI	ASST	5 cut(s)	23, 193, 360, 444, 610
SfaNI	GCATC	2 cut(s)	42, 375
SinI	GGWCC	1 cut(s)	375
SnaBI	TACGTA	1 cut(s)	608
Sse9I	AATT	4 cut(s)	32, 64, 183, 496
SsiI	CCGC	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	428
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	1 cut(s)	610
TaqI	TCGA	1 cut(s)	315
TasI	AATT	4 cut(s)	32, 64, 183, 496
TfiI	GAWTC	2 cut(s)	219, 317
Tru1I	TTAA	4 cut(s)	294, 332, 465, 619
Tru9I	TTAA	4 cut(s)	294, 332, 465, 619
TseI	GCWGC	3 cut(s)	263, 271, 503
TspDTI	ATGAA	1 cut(s)	593
VpaK11BI	GGWCC	1 cut(s)	375
XapI	RAATTY	2 cut(s)	183, 496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.