Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009496

Physical Location & Seq

Genomic Coordinates Reverse (-)

40823321 .. 40826054

Gene Structure 2734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G490700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGATTTTCAAAATACAAAAATGTGGGGAAAGATTGTGTCTTGGATGGAGGATGCTGTCCAGGAAGTACAGTTCAAGCGAACACATAAGGCAATTTTCTGACCCAACCAAAGCAATATGCAAAATCATGATGTCTTGCCCAACACTTGCACTTGATACTGCCCTTGACCAAAGTGGGATCAGAATTTCACCTGAAATGGTAGAGGAAGTTCTCATGAGATTCCAGAATGCTGGTATGGTTGCATACCGATTCTTCGAATGGGCAGGGAAGCAGCGGAATTACACACATAGCGTGAAGGCTTACCATGCCATGATTGAGTCTTTGGCCAAGATAAGGCAGTACCAGATCATGTGGGAGCTTGTGAACTCAATGAGGGCCAAGAGAATGCAGAACATGGAGACATTTAGCATAATTATGAGGAAGTATGCTAGAGCCCAGAAGGTTGAAGAAGCGCTTTATACATTTAACGTTATGGAAAAGTACGATTGTGCTCCGAATTTAGCAGCGTTCAATGGCCTGCTGAGTGCTTTGTGTAAGTCCAAGAATGTGAGGAAGGCTCAGGAGATTTTTGATAAAATGAAGGATCGGTTTGAGCCAGACTCGAAGACTTATAGTATATTGATTGATGGGTGGGGAAAGGATCCGAATTTGCCTAAGGCAAGGGAGGTCTTTAGAGAAATGACTGATGCTGGTTGTAATCCTGATATAGTGACTTATGGTATCATGGTTGATGTTCTTTGTAAGGCAGGGAGAGTGGATGAAGCGATTGAGATCGTTCGGGGCATGGATGATAGTGGTTGTACACCTACATCTTTTATTTACAGCGTTTTGGTGCATACATATGGGGTGGAACACAGGATTGAAGATGCTGTTGACGCATTCTTGGAGATGGAAAGGAATGGAATCAAGGCTGATGTGGTGGTGTATAATGCCTTGATTGGTGCCTTTTGTAAGGCTAACAAGTTCAAGAACGTGTATAGGGTCTTAAATGATATGGATTCCAAAGGTGTTAAACCCAATTCAAGGACCTGCAATATCATTTTGAATAGCTTGATTGATCGTGGAGAGACTGATGAGGCATTTAGTGTCTTTCGTAAAATGATCAAACTATGTGAGCCTGATGCAGATACGTATACGATGATGATAAAGATGTTTTGTGAGAAAGATGAGCTAGAGATGGCTCTCAAAGTCTGGAAGTACATGAAGCAGAGGCGGTTTGTGCCGAGCATGCATACATATTCCGTCCTTATAAATGGATTGTGTGAGAAGGGCAATACTTCAAAGGCTTGTGTCTTTTTGGAAGAGATGATAGAGAAGGGGATTCGGCCAGCAGGTGTGACATTTGGGAGATTAAGACAGTTGCTGATAAAAGAAGGAAGAGAAGATGTACTCAATTTTCTAAATGAAAAAATCAATCTCCTGGTCAAGGAGCCTTTATTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

482

Amino Acids

55.39

Weight (kDa)

8.65

Isoelectric Point (pI)

31.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77360 AT1G77360
fragaria_vesca	FvH4_5g25662
malus_domestica	MD05G1026300.v1.1
prunus_persica	Prupe.1G490700_v2.0.a1 Prupe.1G490700_v2.0.a1
pyrus_communis	pycom05g01720 pycom05g01730 pycom05g01820
rosa_chinensis	RchiOBHm_Chr7g0215971 RchiOBHm_Chr7g0216001
rosa_multiflora	Rmu_sc0002356.1_g000012 Rmu_sc0014454.1_g000007 Rmu_sc0014455.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243740
rosa_rugosa	Rorug07G0157400
rosa_samantha	Rh7AG295400 Rh7BG287400 Rh7CG315600 Rh7DG298200
rosa_wichuraiana	Rw7G025090 Rw7G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1250
AarI	CACCTGC	1 cut(s)	1322
Acc36I	ACCTGC	2 cut(s)	1037, 1322
AccB1I	GGYRCC	1 cut(s)	941
AccI	GTMKAC	1 cut(s)	1133
AciI	CCGC	2 cut(s)	274, 1213
AclI	AACGTT	1 cut(s)	468
AclWI	GGATC	4 cut(s)	185, 591, 635, 648
AcoI	YGGCCR	2 cut(s)	324, 1325
AcsI	RAATTY	3 cut(s)	183, 496, 646
AfaI	GTAC	6 cut(s)	68, 341, 482, 802, 1199, 1389
AfeI	AGCGCT	1 cut(s)	453
AfiI	CCNNNNNNNGG	3 cut(s)	333, 1023, 1426
AflIII	ACRYGT	1 cut(s)	972
AgsI	TTSAA	9 cut(s)	10, 75, 446, 511, 863, 967, 1023, 1045, 1281
AjnI	CCWGG	2 cut(s)	59, 1419
AloI	GAACNNNNNNTCC	2 cut(s)	55, 87
AluBI	AGCT	3 cut(s)	358, 1050, 1171
AluI	AGCT	3 cut(s)	358, 1050, 1171
Alw21I	GWGCWC	1 cut(s)	493
Alw26I	GTCTC	2 cut(s)	392, 1061
AlwI	GGATC	4 cut(s)	185, 591, 635, 648
AlwNI	CAGNNNCTG	1 cut(s)	1363
Aor51HI	AGCGCT	1 cut(s)	453
AoxI	GGCC	4 cut(s)	324, 375, 514, 1325
ApeKI	GCWGC	2 cut(s)	271, 503
ApoI	RAATTY	3 cut(s)	183, 496, 646
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	2 cut(s)	375, 1026
AsuHPI	GGTGA	1 cut(s)	180
AsuII	TTCGAA	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	1026
AxyI	CCTNAGG	1 cut(s)	654
BalI	TGGCCA	1 cut(s)	326
BamHI	GGATCC	1 cut(s)	640
BanI	GGYRCC	1 cut(s)	941
BanII	GRGCYC	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	611
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	2 cut(s)	283, 515
BccI	CCATC	4 cut(s)	39, 620, 883, 1171
BciT130I	CCWGG	2 cut(s)	61, 1421
BclI	TGATCA	1 cut(s)	1101
BcoDI	GTCTC	2 cut(s)	392, 1061
BfaI	CTAG	2 cut(s)	429, 1172
BfoI	RGCGCY	1 cut(s)	455
BfuAI	ACCTGC	2 cut(s)	1037, 1322
BisI	GCNGC	2 cut(s)	272, 504
BlsI	GCNGC	2 cut(s)	273, 505
Bme1390I	CCNGG	2 cut(s)	61, 1421
Bme18I	GGWCC	1 cut(s)	1026
BmgT120I	GGNCC	2 cut(s)	375, 1026
BmiI	GGNNCC	3 cut(s)	642, 943, 1431
BmrFI	CCNGG	2 cut(s)	61, 1421
BmsI	GCATC	4 cut(s)	42, 676, 856, 1111
BpiI	GAAGAC	1 cut(s)	611
BplI	GAGNNNNNCTC	4 cut(s)	541, 573, 584, 616
Bpu10I	CCTNAGC	1 cut(s)	558
Bpu14I	TTCGAA	1 cut(s)	255
BsaAI	YACGTR	1 cut(s)	1131
BsaBI	GATNNNNATC	1 cut(s)	770
Bsc4I	CCNNNNNNNGG	3 cut(s)	333, 1023, 1426
Bse21I	CCTNAGG	1 cut(s)	654
Bse8I	GATNNNNATC	1 cut(s)	770
BseBI	CCWGG	2 cut(s)	61, 1421
BseGI	GGATG	4 cut(s)	50, 57, 763, 793
BseJI	GATNNNNATC	1 cut(s)	770
BseLI	CCNNNNNNNGG	3 cut(s)	333, 1023, 1426
BseMII	CTCAG	2 cut(s)	512, 572
BseXI	GCAGC	2 cut(s)	283, 515
BshFI	GGCC	4 cut(s)	326, 377, 516, 1327
BshNI	GGYRCC	1 cut(s)	941
BsiHKAI	GWGCWC	1 cut(s)	493
BslI	CCNNNNNNNGG	3 cut(s)	333, 1023, 1426
BsmAI	GTCTC	2 cut(s)	392, 1061
BsmI	GAATGC	3 cut(s)	232, 390, 878
BsnI	GGCC	4 cut(s)	326, 377, 516, 1327
Bsp119I	TTCGAA	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	436, 493
Bsp1407I	TGTACA	1 cut(s)	800
Bsp143I	GATC	7 cut(s)	177, 345, 583, 640, 771, 1057, 1101
BspACI	CCGC	2 cut(s)	274, 1213
BspANI	GGCC	4 cut(s)	326, 377, 516, 1327
BspCNI	CTCAG	2 cut(s)	513, 571
BspHI	TCATGA	2 cut(s)	126, 213
BspLI	GGNNCC	3 cut(s)	642, 943, 1431
BspMI	ACCTGC	2 cut(s)	1037, 1322
BspPI	GGATC	4 cut(s)	185, 591, 635, 648
BspT104I	TTCGAA	1 cut(s)	255
BspT107I	GGYRCC	1 cut(s)	941
BsrGI	TGTACA	1 cut(s)	800
BssMI	GATC	7 cut(s)	177, 345, 583, 640, 771, 1057, 1101
BssNAI	GTATAC	1 cut(s)	1134
Bst1107I	GTATAC	1 cut(s)	1134
Bst2UI	CCWGG	2 cut(s)	61, 1421
Bst4CI	ACNGT	2 cut(s)	71, 1359
Bst6I	CTCTTC	2 cut(s)	1296, 1372
BstAUI	TGTACA	1 cut(s)	800
BstBAI	YACGTR	1 cut(s)	1131
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	3 cut(s)	518, 1229, 1329
BstDEI	CTNAG	3 cut(s)	521, 558, 654
BstENI	CCTNNNNNAGG	1 cut(s)	1424
BstF5I	GGATG	4 cut(s)	50, 57, 763, 793
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	7 cut(s)	180, 348, 586, 643, 774, 1060, 1104
BstMAI	GTCTC	2 cut(s)	392, 1061
BstMBI	GATC	7 cut(s)	177, 345, 583, 640, 771, 1057, 1101
BstMWI	GCNNNNNNNGC	4 cut(s)	305, 875, 1219, 1228
BstNI	CCWGG	2 cut(s)	61, 1421
BstNSI	RCATGY	1 cut(s)	1231
BstSCI	CCNGG	2 cut(s)	59, 1419
BstSNI	TACGTA	1 cut(s)	1131
BstV1I	GCAGC	2 cut(s)	283, 515
BstV2I	GAAGAC	1 cut(s)	611
BstX2I	RGATCY	1 cut(s)	640
BstXI	CCANNNNNNTGG	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	640
BstZ17I	GTATAC	1 cut(s)	1134
Bsu36I	CCTNAGG	1 cut(s)	654
BsuRI	GGCC	4 cut(s)	326, 377, 516, 1327
BtsCI	GGATG	4 cut(s)	50, 57, 763, 793
BveI	ACCTGC	2 cut(s)	1037, 1322
Cac8I	GCNNGC	3 cut(s)	518, 1229, 1329
CaiI	CAGNNNCTG	1 cut(s)	1363
CciI	TCATGA	2 cut(s)	126, 213
CfoI	GCGC	1 cut(s)	454
Cfr13I	GGNCC	2 cut(s)	375, 1026
CseI	GACGC	1 cut(s)	884
Csp6I	GTAC	6 cut(s)	67, 340, 481, 801, 1198, 1388
CviQI	GTAC	6 cut(s)	67, 340, 481, 801, 1198, 1388
DdeI	CTNAG	3 cut(s)	521, 558, 654
DpnI	GATC	7 cut(s)	179, 347, 585, 642, 773, 1059, 1103
DpnII	GATC	7 cut(s)	177, 345, 583, 640, 771, 1057, 1101
EaeI	YGGCCR	2 cut(s)	324, 1325
Eam1104I	CTCTTC	2 cut(s)	1296, 1372
EarI	CTCTTC	2 cut(s)	1296, 1372
Eco105I	TACGTA	1 cut(s)	1131
Eco24I	GRGCYC	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	1026
Eco47III	AGCGCT	1 cut(s)	453
Eco81I	CCTNAGG	1 cut(s)	654
EcoNI	CCTNNNNNAGG	1 cut(s)	1424
EcoO109I	RGGNCCY	1 cut(s)	1026
EcoRII	CCWGG	2 cut(s)	59, 1419
EcoT22I	ATGCAT	1 cut(s)	1233
EcoT38I	GRGCYC	1 cut(s)	436
FalI	AAGNNNNNCTT	2 cut(s)	438, 470
FauNDI	CATATG	1 cut(s)	841
FbaI	TGATCA	1 cut(s)	1101
FblI	GTMKAC	1 cut(s)	1133
Fnu4HI	GCNGC	2 cut(s)	272, 504
FokI	GGATG	4 cut(s)	57, 64, 770, 800
FriOI	GRGCYC	1 cut(s)	436
Fsp4HI	GCNGC	2 cut(s)	272, 504
FspBI	CTAG	2 cut(s)	429, 1172
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	2 cut(s)	272, 504
HaeII	RGCGCY	1 cut(s)	455
HaeIII	GGCC	4 cut(s)	326, 377, 516, 1327
HgaI	GACGC	1 cut(s)	884
HhaI	GCGC	1 cut(s)	454
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HinfI	GANTC	7 cut(s)	219, 249, 317, 599, 903, 998, 1321
HphI	GGTGA	1 cut(s)	180
Hpy166II	GTNNAC	4 cut(s)	364, 803, 874, 1134
Hpy188I	TCNGA	4 cut(s)	100, 182, 495, 645
Hpy188III	TCNNGA	7 cut(s)	127, 214, 223, 560, 701, 967, 1192
Hpy8I	GTNNAC	4 cut(s)	364, 803, 874, 1134
HpyAV	CCTTC	7 cut(s)	289, 433, 547, 574, 1261, 1309, 1367
HpyCH4III	ACNGT	2 cut(s)	71, 1359
HpyCH4IV	ACGT	3 cut(s)	468, 972, 1130
HpyCH4V	TGCA	8 cut(s)	120, 149, 242, 388, 835, 1032, 1124, 1231
HpyF10VI	GCNNNNNNNGC	4 cut(s)	305, 875, 1219, 1228
HpyF3I	CTNAG	3 cut(s)	521, 558, 654
HpySE526I	ACGT	3 cut(s)	468, 972, 1130
HspAI	GCGC	1 cut(s)	452
Ksp22I	TGATCA	1 cut(s)	1101
Kzo9I	GATC	7 cut(s)	177, 345, 583, 640, 771, 1057, 1101
LmnI	GCTCC	3 cut(s)	355, 496, 1429
Lsp1109I	GCAGC	2 cut(s)	283, 515
LweI	GCATC	4 cut(s)	42, 676, 856, 1111
MaeI	CTAG	2 cut(s)	429, 1172
MaeII	ACGT	3 cut(s)	468, 972, 1130
MaeIII	GTNAC	2 cut(s)	709, 1336
MalI	GATC	7 cut(s)	179, 347, 585, 642, 773, 1059, 1103
MboI	GATC	7 cut(s)	177, 345, 583, 640, 771, 1057, 1101
MboII	GAAGA	7 cut(s)	244, 458, 616, 875, 1313, 1389, 1394
MflI	RGATCY	1 cut(s)	640
MhlI	GDGCHC	2 cut(s)	436, 493
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	8 cut(s)	92, 183, 277, 411, 496, 646, 1018, 1393
MluNI	TGGCCA	1 cut(s)	326
MlyI	GAGTC	2 cut(s)	326, 593
MnlI	CCTC	8 cut(s)	42, 196, 366, 411, 543, 658, 1069, 1203
Mox20I	TGGCCA	1 cut(s)	326
Mph1103I	ATGCAT	1 cut(s)	1233
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	4 cut(s)	465, 986, 1011, 1352
MslI	CAYNNNNRTG	2 cut(s)	413, 840
Msp20I	TGGCCA	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	274
MspR9I	CCNGG	2 cut(s)	61, 1421
Mva1269I	GAATGC	3 cut(s)	232, 390, 878
MvaI	CCWGG	2 cut(s)	61, 1421
MwoI	GCNNNNNNNGC	4 cut(s)	305, 875, 1219, 1228
NdeI	CATATG	1 cut(s)	841
NdeII	GATC	7 cut(s)	177, 345, 583, 640, 771, 1057, 1101
NlaIV	GGNNCC	3 cut(s)	642, 943, 1431
NmeAIII	GCCGAG	1 cut(s)	1248
NmuCI	GTSAC	2 cut(s)	709, 1336
NsiI	ATGCAT	1 cut(s)	1233
NspI	RCATGY	1 cut(s)	1231
NspV	TTCGAA	1 cut(s)	255
PaeI	GCATGC	1 cut(s)	1231
PagI	TCATGA	2 cut(s)	126, 213
PaqCI	CACCTGC	1 cut(s)	1322
PctI	GAATGC	3 cut(s)	232, 390, 878
PfeI	GAWTC	5 cut(s)	219, 249, 903, 998, 1321
PfoI	TCCNGGA	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	273, 505
PleI	GAGTC	2 cut(s)	325, 593
PpsI	GAGTC	2 cut(s)	325, 593
Ppu21I	YACGTR	1 cut(s)	1131
PpuMI	RGGWCCY	1 cut(s)	1026
PsiI	TTATAA	1 cut(s)	1250
Psp1406I	AACGTT	1 cut(s)	468
Psp5II	RGGWCCY	1 cut(s)	1026
Psp6I	CCWGG	2 cut(s)	59, 1419
PspGI	CCWGG	2 cut(s)	59, 1419
PspN4I	GGNNCC	3 cut(s)	642, 943, 1431
PspPI	GGNCC	2 cut(s)	375, 1026
PspPPI	RGGWCCY	1 cut(s)	1026
PsrI	GAACNNNNNNTAC	2 cut(s)	192, 224
PstNI	CAGNNNCTG	1 cut(s)	1363
PsuI	RGATCY	1 cut(s)	640
RsaI	GTAC	6 cut(s)	68, 341, 482, 802, 1199, 1389
RsaNI	GTAC	6 cut(s)	67, 340, 481, 801, 1198, 1388
RseI	CAYNNNNRTG	2 cut(s)	413, 840
SaqAI	TTAA	4 cut(s)	465, 986, 1011, 1352
SatI	GCNGC	2 cut(s)	272, 504
Sau3AI	GATC	7 cut(s)	177, 345, 583, 640, 771, 1057, 1101
Sau96I	GGNCC	2 cut(s)	375, 1026
SchI	GAGTC	2 cut(s)	326, 593
ScrFI	CCNGG	2 cut(s)	61, 1421
SduI	GDGCHC	2 cut(s)	436, 493
SfaNI	GCATC	4 cut(s)	42, 676, 856, 1111
SfuI	TTCGAA	1 cut(s)	255
SinI	GGWCC	1 cut(s)	1026
SmiMI	CAYNNNNRTG	2 cut(s)	413, 840
SnaBI	TACGTA	1 cut(s)	1131
SphI	GCATGC	1 cut(s)	1231
Sse9I	AATT	8 cut(s)	92, 183, 277, 411, 496, 646, 1018, 1393
SsiI	CCGC	2 cut(s)	274, 1213
SspMI	CTAG	2 cut(s)	429, 1172
StyD4I	CCNGG	2 cut(s)	59, 1419
TaaI	ACNGT	2 cut(s)	71, 1359
TaiI	ACGT	3 cut(s)	471, 975, 1133
TaqI	TCGA	2 cut(s)	255, 602
TasI	AATT	8 cut(s)	92, 183, 277, 411, 496, 646, 1018, 1393
TatI	WGTACW	4 cut(s)	66, 800, 1197, 1387
TfiI	GAWTC	5 cut(s)	219, 249, 903, 998, 1321
Tru1I	TTAA	4 cut(s)	465, 986, 1011, 1352
Tru9I	TTAA	4 cut(s)	465, 986, 1011, 1352
TseFI	GTSAC	2 cut(s)	709, 1336
TseI	GCWGC	2 cut(s)	271, 503
Tsp45I	GTSAC	2 cut(s)	709, 1336
TspDTI	ATGAA	4 cut(s)	593, 774, 1217, 1419
TspGWI	ACGGA	1 cut(s)	1231
VpaK11BI	GGWCC	1 cut(s)	1026
XagI	CCTNNNNNAGG	1 cut(s)	1424
XapI	RAATTY	3 cut(s)	183, 496, 646
XceI	RCATGY	1 cut(s)	1231
XmiI	GTMKAC	1 cut(s)	1133
XspI	CTAG	2 cut(s)	429, 1172
Zsp2I	ATGCAT	1 cut(s)	1233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.