Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014455.1

Orthogroup ID

OG0009496

Physical Location & Seq

Genomic Coordinates Forward (+)

13757 .. 15076

Gene Structure 1320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014455.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

atgatgtcttgccccacactcacacttgatactgcccttgatcaaagtgggctcagaatttcacctgaaatagtagaggatgttctcgtgagattcaagaatgccggaatggttgcataccgcttctttgaatgggcagcgaagcagcaaaactacatgcatagtgttaaggcataccatgctatgatcgattctttggcaaagataaggcagtaccagatcatgtgggagcttgtgaactcaatgaggacccaaaggatgcagaatatggagacatttggtatcattatgaggaagtatgccagggctcagaaggttgaggaagcgatttatacttttaatgttatggaaaagtatgattgtgctccgaatttagcggcattcaatggcctactgagtgctttgtgcaaatccaagaatgtgaggaaggctcaggagatttttgataaaatgaaggaccgctttgagccagactcaaagacatacagtatattaattgatggatggggaaaggatccaaatttgcccaaggcaagggaggtctttagagaaatggttgatgctggctgtaatcctgatatagtgacttatggtatcatggttgatgttctgtgcaaagcagggagggtggacgaagccattgagattgttcggggcatggatgctagtggttgtatgcctacatcttttatttacagtgttctggtgcatacatatggggtggaaaataggattgaagatgctgttgaagcattcttggagatggaaaggaatggaatcaaggctgatgttgccgtctataatgccttgattggtgctttttgtaaagttaacaagttcaagaacgtgtggagggtcttaaatgatatgacttccaaaggtgttacagccaattcgaggacctgcaatatcatcttaaacagcttgattgaccgtggagaaactgatgaggcatttagtgtctttcgtaaaatgatcaaagtatgtgatccagatgcagatacatatacaatgatgataaaaatgttttgcgagagaaatgaattagagatggctcttaaagtgtggaagtacatgaagttgaaacagtttgttcccagtatgcatacatactcagtccttattaatggattgtgtgaaaatggtaatgcttcaaaggcttgtgtcttactggaagagatgatagagaaggggattcggccatcaggtgtgacatttgggagattaagacagttgcttataaaagaaggaagagaagatgtactgaaatttcttcaagaaaaaatcaatctcctcgtcaaagagcctttatctgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

439

Amino Acids

50.15

Weight (kDa)

7.87

Isoelectric Point (pI)

31.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77360 AT1G77360
fragaria_vesca	FvH4_5g25662
malus_domestica	MD05G1026300.v1.1
prunus_persica	Prupe.1G490700_v2.0.a1 Prupe.1G490700_v2.0.a1
pyrus_communis	pycom05g01720 pycom05g01730 pycom05g01820
rosa_chinensis	RchiOBHm_Chr7g0215971 RchiOBHm_Chr7g0216001
rosa_multiflora	Rmu_sc0002356.1_g000012 Rmu_sc0014454.1_g000007 Rmu_sc0014455.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243740
rosa_rugosa	Rorug07G0157400
rosa_samantha	Rh7AG295400 Rh7BG287400 Rh7CG315600 Rh7DG298200
rosa_wichuraiana	Rw7G025090 Rw7G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1241
Acc36I	ACCTGC	1 cut(s)	911
AciI	CCGC	3 cut(s)	121, 377, 460
AclWI	GGATC	3 cut(s)	509, 522, 983
AcoI	YGGCCR	1 cut(s)	1199
AcsI	RAATTY	4 cut(s)	57, 370, 520, 1268
AfaI	GTAC	3 cut(s)	215, 1073, 1263
AfiI	CCNNNNNNNGG	2 cut(s)	534, 897
AflIII	ACRYGT	1 cut(s)	846
AgsI	TTSAA	9 cut(s)	97, 131, 385, 737, 749, 841, 1084, 1155, 1277
AjnI	CCWGG	1 cut(s)	302
AluBI	AGCT	2 cut(s)	232, 924
AluI	AGCT	2 cut(s)	232, 924
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	3 cut(s)	509, 522, 983
AoxI	GGCC	2 cut(s)	388, 1199
ApeKI	GCWGC	2 cut(s)	137, 145
ApoI	RAATTY	4 cut(s)	57, 370, 520, 1268
AseI	ATTAAT	2 cut(s)	494, 1125
AspS9I	GGNCC	3 cut(s)	249, 457, 900
AsuHPI	GGTGA	1 cut(s)	54
AvaII	GGWCC	3 cut(s)	249, 457, 900
BamHI	GGATCC	1 cut(s)	514
BanII	GRGCYC	2 cut(s)	54, 310
BauI	CACGAG	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	2 cut(s)	149, 157
BccI	CCATC	5 cut(s)	494, 498, 757, 1045, 1210
BceAI	ACGGC	1 cut(s)	779
BciT130I	CCWGG	1 cut(s)	304
BclI	TGATCA	2 cut(s)	40, 975
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	666
BfuAI	ACCTGC	1 cut(s)	911
BisI	GCNGC	3 cut(s)	138, 146, 378
BlsI	GCNGC	3 cut(s)	139, 147, 379
Bme1390I	CCNGG	1 cut(s)	304
Bme18I	GGWCC	3 cut(s)	249, 457, 900
BmgT120I	GGNCC	3 cut(s)	249, 457, 900
BmiI	GGNNCC	2 cut(s)	251, 516
BmrFI	CCNGG	1 cut(s)	304
BmrI	ACTGGG	1 cut(s)	1092
BmsI	GCATC	5 cut(s)	249, 550, 652, 730, 985
BmuI	ACTGGG	1 cut(s)	1092
BplI	GAGNNNNNCTC	4 cut(s)	415, 447, 458, 490
Bpu10I	CCTNAGC	1 cut(s)	432
Bsa29I	ATCGAT	1 cut(s)	189
BsaJI	CCNNGG	3 cut(s)	303, 528, 934
Bsc4I	CCNNNNNNNGG	2 cut(s)	534, 897
Bse1I	ACTGG	2 cut(s)	1098, 1176
BseBI	CCWGG	1 cut(s)	304
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	3 cut(s)	303, 528, 934
BseGI	GGATG	4 cut(s)	85, 264, 509, 667
BseLI	CCNNNNNNNGG	2 cut(s)	534, 897
BseMII	CTCAG	5 cut(s)	67, 323, 386, 446, 1128
BseNI	ACTGG	2 cut(s)	1098, 1176
BseRI	GAGGAG	1 cut(s)	1283
BseXI	GCAGC	2 cut(s)	149, 157
BshFI	GGCC	2 cut(s)	390, 1201
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	367
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	2 cut(s)	534, 897
BsmAI	GTCTC	1 cut(s)	266
BsmI	GAATGC	3 cut(s)	106, 380, 752
BsnI	GGCC	2 cut(s)	390, 1201
Bsp1286I	GDGCHC	3 cut(s)	54, 310, 367
Bsp143I	GATC	6 cut(s)	40, 186, 219, 514, 975, 988
BspACI	CCGC	3 cut(s)	121, 377, 460
BspANI	GGCC	2 cut(s)	390, 1201
BspCNI	CTCAG	5 cut(s)	66, 322, 387, 445, 1127
BspDI	ATCGAT	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	251, 516
BspMI	ACCTGC	1 cut(s)	911
BspPI	GGATC	3 cut(s)	509, 522, 983
BsrI	ACTGG	2 cut(s)	1098, 1176
BssECI	CCNNGG	3 cut(s)	303, 528, 934
BssMI	GATC	6 cut(s)	40, 186, 219, 514, 975, 988
BssSI	CACGAG	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	304
Bst4CI	ACNGT	5 cut(s)	488, 698, 935, 1089, 1233
Bst6I	CTCTTC	2 cut(s)	1170, 1246
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	565
BstDEI	CTNAG	5 cut(s)	53, 309, 395, 432, 1114
BstDSI	CCRYGG	1 cut(s)	934
BstF5I	GGATG	4 cut(s)	85, 264, 509, 667
BstKTI	GATC	6 cut(s)	43, 189, 222, 517, 978, 991
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	6 cut(s)	40, 186, 219, 514, 975, 988
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 749, 791, 1157
BstNI	CCWGG	1 cut(s)	304
BstNSI	RCATGY	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	302
BstV1I	GCAGC	2 cut(s)	149, 157
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
Bsu15I	ATCGAT	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	390, 1201
BsuTUI	ATCGAT	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	934
BtsCI	GGATG	4 cut(s)	85, 264, 509, 667
BtsIMutI	CAGTG	1 cut(s)	703
BveI	ACCTGC	1 cut(s)	911
Cac8I	GCNNGC	1 cut(s)	565
Cfr13I	GGNCC	3 cut(s)	249, 457, 900
ClaI	ATCGAT	1 cut(s)	189
Csp6I	GTAC	3 cut(s)	214, 1072, 1262
CviAII	CATG	6 cut(s)	157, 179, 223, 598, 658, 1075
CviQI	GTAC	3 cut(s)	214, 1072, 1262
DdeI	CTNAG	5 cut(s)	53, 309, 395, 432, 1114
DpnI	GATC	6 cut(s)	42, 188, 221, 516, 977, 990
DpnII	GATC	6 cut(s)	40, 186, 219, 514, 975, 988
EaeI	YGGCCR	1 cut(s)	1199
Eam1104I	CTCTTC	2 cut(s)	1170, 1246
EarI	CTCTTC	2 cut(s)	1170, 1246
Eco130I	CCWWGG	1 cut(s)	528
Eco24I	GRGCYC	2 cut(s)	54, 310
Eco47I	GGWCC	3 cut(s)	249, 457, 900
EcoO109I	RGGNCCY	2 cut(s)	249, 900
EcoRII	CCWGG	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	528
EcoT22I	ATGCAT	2 cut(s)	162, 1107
EcoT38I	GRGCYC	2 cut(s)	54, 310
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	6 cut(s)	160, 182, 226, 601, 661, 1078
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FatI	CATG	6 cut(s)	156, 178, 222, 597, 657, 1074
FauNDI	CATATG	1 cut(s)	715
FbaI	TGATCA	2 cut(s)	40, 975
Fnu4HI	GCNGC	3 cut(s)	138, 146, 378
FokI	GGATG	4 cut(s)	92, 271, 516, 674
FriOI	GRGCYC	2 cut(s)	54, 310
Fsp4HI	GCNGC	3 cut(s)	138, 146, 378
FspBI	CTAG	1 cut(s)	666
GluI	GCNGC	3 cut(s)	138, 146, 378
HaeIII	GGCC	2 cut(s)	390, 1201
HapII	CCGG	1 cut(s)	105
Hin1II	CATG	6 cut(s)	160, 182, 226, 601, 661, 1078
HincII	GTYRAC	1 cut(s)	832
HindII	GTYRAC	1 cut(s)	832
HinfI	GANTC	5 cut(s)	93, 191, 473, 777, 1195
HpaI	GTTAAC	1 cut(s)	832
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	1 cut(s)	54
Hpy166II	GTNNAC	3 cut(s)	238, 631, 832
Hpy188I	TCNGA	4 cut(s)	56, 312, 369, 1315
Hpy188III	TCNNGA	7 cut(s)	88, 97, 434, 575, 841, 992, 1277
Hpy8I	GTNNAC	3 cut(s)	238, 631, 832
HpyAV	CCTTC	5 cut(s)	307, 421, 448, 1183, 1241
HpyCH4III	ACNGT	5 cut(s)	488, 698, 935, 1089, 1233
HpyCH4IV	ACGT	1 cut(s)	846
HpyCH4V	TGCA	9 cut(s)	116, 160, 262, 408, 615, 709, 906, 998, 1105
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 749, 791, 1157
HpyF3I	CTNAG	5 cut(s)	53, 309, 395, 432, 1114
HpySE526I	ACGT	1 cut(s)	846
Hsp92II	CATG	6 cut(s)	160, 182, 226, 601, 661, 1078
Ksp22I	TGATCA	2 cut(s)	40, 975
KspAI	GTTAAC	1 cut(s)	832
Kzo9I	GATC	6 cut(s)	40, 186, 219, 514, 975, 988
LmnI	GCTCC	2 cut(s)	229, 370
Lsp1109I	GCAGC	2 cut(s)	149, 157
LweI	GCATC	5 cut(s)	249, 550, 652, 730, 985
MaeI	CTAG	1 cut(s)	666
MaeII	ACGT	1 cut(s)	846
MaeIII	GTNAC	3 cut(s)	583, 883, 1210
MalI	GATC	6 cut(s)	42, 188, 221, 516, 977, 990
MboI	GATC	6 cut(s)	40, 186, 219, 514, 975, 988
MboII	GAAGA	5 cut(s)	749, 1187, 1263, 1265, 1268
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	3 cut(s)	54, 310, 367
MluCI	AATT	7 cut(s)	57, 370, 495, 520, 892, 1043, 1268
MlyI	GAGTC	1 cut(s)	467
Mph1103I	ATGCAT	2 cut(s)	162, 1107
MseI	TTAA	9 cut(s)	168, 339, 494, 831, 860, 917, 1059, 1125, 1226
MslI	CAYNNNNRTG	1 cut(s)	714
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	304
Mva1269I	GAATGC	3 cut(s)	106, 380, 752
MvaI	CCWGG	1 cut(s)	304
MwoI	GCNNNNNNNGC	4 cut(s)	179, 749, 791, 1157
NdeI	CATATG	1 cut(s)	715
NdeII	GATC	6 cut(s)	40, 186, 219, 514, 975, 988
NlaIII	CATG	6 cut(s)	160, 182, 226, 601, 661, 1078
NlaIV	GGNNCC	2 cut(s)	251, 516
NmuCI	GTSAC	2 cut(s)	583, 1210
NsiI	ATGCAT	2 cut(s)	162, 1107
NspI	RCATGY	1 cut(s)	160
PctI	GAATGC	3 cut(s)	106, 380, 752
PfeI	GAWTC	4 cut(s)	93, 191, 777, 1195
PkrI	GCNGC	3 cut(s)	139, 147, 379
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
PpuMI	RGGWCCY	2 cut(s)	249, 900
PshBI	ATTAAT	2 cut(s)	494, 1125
PsiI	TTATAA	1 cut(s)	1241
Psp5II	RGGWCCY	2 cut(s)	249, 900
Psp6I	CCWGG	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	302
PspN4I	GGNNCC	2 cut(s)	251, 516
PspPI	GGNCC	3 cut(s)	249, 457, 900
PspPPI	RGGWCCY	2 cut(s)	249, 900
PsrI	GAACNNNNNNTAC	2 cut(s)	66, 98
PsuI	RGATCY	1 cut(s)	514
RsaI	GTAC	3 cut(s)	215, 1073, 1263
RsaNI	GTAC	3 cut(s)	214, 1072, 1262
RseI	CAYNNNNRTG	1 cut(s)	714
SaqAI	TTAA	9 cut(s)	168, 339, 494, 831, 860, 917, 1059, 1125, 1226
SatI	GCNGC	3 cut(s)	138, 146, 378
Sau3AI	GATC	6 cut(s)	40, 186, 219, 514, 975, 988
Sau96I	GGNCC	3 cut(s)	249, 457, 900
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	1 cut(s)	304
SduI	GDGCHC	3 cut(s)	54, 310, 367
SetI	ASST	9 cut(s)	67, 234, 318, 543, 849, 883, 905, 926, 1210
SfaNI	GCATC	5 cut(s)	249, 550, 652, 730, 985
SinI	GGWCC	3 cut(s)	249, 457, 900
SmiMI	CAYNNNNRTG	1 cut(s)	714
Sse9I	AATT	7 cut(s)	57, 370, 495, 520, 892, 1043, 1268
SsiI	CCGC	3 cut(s)	121, 377, 460
SspMI	CTAG	1 cut(s)	666
StyD4I	CCNGG	1 cut(s)	302
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	5 cut(s)	488, 698, 935, 1089, 1233
TaiI	ACGT	1 cut(s)	849
TaqI	TCGA	2 cut(s)	189, 896
TasI	AATT	7 cut(s)	57, 370, 495, 520, 892, 1043, 1268
TatI	WGTACW	2 cut(s)	1071, 1261
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	4 cut(s)	93, 191, 777, 1195
Tru1I	TTAA	9 cut(s)	168, 339, 494, 831, 860, 917, 1059, 1125, 1226
Tru9I	TTAA	9 cut(s)	168, 339, 494, 831, 860, 917, 1059, 1125, 1226
TscAI	CASTG	1 cut(s)	703
TseFI	GTSAC	2 cut(s)	583, 1210
TseI	GCWGC	2 cut(s)	137, 145
Tsp45I	GTSAC	2 cut(s)	583, 1210
TspDTI	ATGAA	3 cut(s)	467, 1056, 1091
TspRI	CASTG	1 cut(s)	703
VpaK11BI	GGWCC	3 cut(s)	249, 457, 900
VspI	ATTAAT	2 cut(s)	494, 1125
XapI	RAATTY	4 cut(s)	57, 370, 520, 1268
XceI	RCATGY	1 cut(s)	160
XspI	CTAG	1 cut(s)	666
Zsp2I	ATGCAT	2 cut(s)	162, 1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.