Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0009496

Physical Location & Seq

Genomic Coordinates Forward (+)

31373837 .. 31383330

Gene Structure 9494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G025110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGAGGAAGTGCTCAGAGGAAGACATAACCACTGTAGATCGGGTAAGCGTTGATCAGGAAAGGGGTGAGGGAGAGCCTCCGCAGACGAGAGAGGAGAGCAGGGAACAATTGGGTGCGGTTGGATCGGGGCCGAGATGGGCGCGAACCCAGTCGACGAGTGCTCGAACCCATTTCAACAAGAAGAAGACGAAAGCTATAGAAGGAGCAGAGCACTTGGACGACGACGACGAAATACAAGGTGCCTTTAATGCCCATTGGGTTACAAAGAATATGATCATCAAGATACAGAGCTGTGGAGAAAAATTGGGTTTTCAATGGATGATGCTCTCCCGAAATTACTGTTCAAGTGAAGCAACAAGGCACATTACTGATCCAACCAAAACAATATGCAAAATCATGATGTCTTGCCCCACACTCATACTTGATACTGCCCTCGATCAAAGTGGGCTCAGAATTTCACCTGAAATAGTAGAGGATGTTCTCGTGAGATTCAAGAATGCCGGAATGGTTGCATACCGCTTCTTTGAATGGGCAGCGAAGCAGCGAAACTACACGCATAGTGTTAAGGCATACCATGCTATGATCGATTCTTTGGCCAAGTTAAGGCAGTACCAGATCATGTGGGAGCTTGTGAACTCAATGAGGACCCAAAGGATGCAGAATATGGAGACATTTGGTATCATTATGAGGAAGTATGCCAGGGCTCAGAAGGTTGAGGAAGCGATTTATACTTTTAATGTTATGGAGAAGTATGATTGTGCTCCGAATTTAGCAGCATTCAATGGCCTGCTGAGTGCTTTGTGCAAATCCAAGAATGTGAGGAAGGCTCAGGAGATTTTTGATAAAATGAAGGATCGCTTTGAGCCAGACTCAAATACGTATAGTATATTAATTGATGGATGGGGAAAGCATCCAAATTTGCCCAAGGCAAGGGAGGTCTTTAGAGAAATGGTTGATGCTGGCTGTAATCCTGATATAGTGACTTATGGTATCATGGTTGATGTTCTGTGCAAAGCAGGGAGGGTGGACGAAGCCATTGAGATTGTTCGGGGCATGGATGCTAGTGGTTGTATGCCTACATCTTTTATTTACAGTGTTCTGGTGCATACATATGGGGTGGAAAATAGGATTGAAGATGCTGTTGAAGCATTCTTGGAGATGGAAAGGAATGGAATCAAGGCTGATGTAGCCTTCTATAATGCCTTGATTGGTGCTTTTTGTAAATTTAACAAGTTCAAGAACGTGTGGAGGGTCTTAAATGATATGACTTCCAAAGGTGTTACAGCCAATTCAAGGACCTGCAATATCATCTTAAACAGCTTGATTGACCATGAGAAACTGATGAGGCATTTAGTGTCTTTCGTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

456

Amino Acids

52.04

Weight (kDa)

8.16

Isoelectric Point (pI)

32.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	223 - 269	3.6e-08	PPR repeat family
PPR_1	PF12854	252 - 284	1.2e-06	PPR repeat
PPR_2	PF13041	255 - 300	7.1e-12	PPR repeat family
PPR_1	PF12854	287 - 318	9.4e-06	PPR repeat
PPR_2	PF13041	289 - 338	7.1e-13	PPR repeat family
PPR_long	PF17177	307 - 437	5.7e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	313 - 372	1.8e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	321 - 352	1.4e-12	PPR repeat
PPR	PF01535	327 - 357	2.6e-06	PPR repeat
TPR_24	PF23276	380 - 452	6.4e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	386 - 439	1.4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	395 - 441	3.1e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77360 AT1G77360
fragaria_vesca	FvH4_5g25662
malus_domestica	MD05G1026300.v1.1
prunus_persica	Prupe.1G490700_v2.0.a1 Prupe.1G490700_v2.0.a1
pyrus_communis	pycom05g01720 pycom05g01730 pycom05g01820
rosa_chinensis	RchiOBHm_Chr7g0215971 RchiOBHm_Chr7g0216001
rosa_multiflora	Rmu_sc0002356.1_g000012 Rmu_sc0014454.1_g000007 Rmu_sc0014455.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243740
rosa_rugosa	Rorug07G0157400
rosa_samantha	Rh7AG295400 Rh7BG287400 Rh7CG315600 Rh7DG298200
rosa_wichuraiana	Rw7G025090 Rw7G025110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1307
AccB1I	GGYRCC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	152
AccII	CGCG	1 cut(s)	142
AciI	CCGC	3 cut(s)	80, 116, 517
AclWI	GGATC	3 cut(s)	130, 365, 861
AcoI	YGGCCR	1 cut(s)	594
AcsI	RAATTY	4 cut(s)	453, 766, 916, 1223
AfaI	GTAC	1 cut(s)	611
AfiI	CCNNNNNNNGG	3 cut(s)	603, 930, 1293
AflIII	ACRYGT	1 cut(s)	1242
AjnI	CCWGG	1 cut(s)	698
AluBI	AGCT	4 cut(s)	194, 291, 628, 1320
AluI	AGCT	4 cut(s)	194, 291, 628, 1320
Alw21I	GWGCWC	4 cut(s)	14, 163, 213, 763
Alw26I	GTCTC	1 cut(s)	662
AlwI	GGATC	3 cut(s)	130, 365, 861
AoxI	GGCC	3 cut(s)	128, 594, 784
ApeKI	GCWGC	3 cut(s)	533, 541, 773
ApoI	RAATTY	4 cut(s)	453, 766, 916, 1223
AseI	ATTAAT	1 cut(s)	890
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	3 cut(s)	128, 645, 1296
AsuHPI	GGTGA	2 cut(s)	77, 450
AvaII	GGWCC	2 cut(s)	645, 1296
BalI	TGGCCA	1 cut(s)	596
BanI	GGYRCC	1 cut(s)	239
BanII	GRGCYC	2 cut(s)	450, 706
BauI	CACGAG	1 cut(s)	482
BbsI	GAAGAC	2 cut(s)	27, 191
Bbv12I	GWGCWC	4 cut(s)	14, 163, 213, 763
BbvI	GCAGC	3 cut(s)	545, 553, 785
BccI	CCATC	4 cut(s)	129, 890, 894, 1153
BciT130I	CCWGG	1 cut(s)	700
BclI	TGATCA	2 cut(s)	52, 273
BcoDI	GTCTC	1 cut(s)	662
BfaI	CTAG	1 cut(s)	1062
BfmI	CTRYAG	2 cut(s)	33, 195
BfuAI	ACCTGC	1 cut(s)	1307
BisI	GCNGC	3 cut(s)	534, 542, 774
BlsI	GCNGC	3 cut(s)	535, 543, 775
Bme1390I	CCNGG	1 cut(s)	700
Bme18I	GGWCC	2 cut(s)	645, 1296
BmgT120I	GGNCC	3 cut(s)	128, 645, 1296
BmiI	GGNNCC	3 cut(s)	129, 241, 647
BmrFI	CCNGG	1 cut(s)	700
BmrI	ACTGGG	1 cut(s)	142
BmsI	GCATC	6 cut(s)	312, 645, 919, 946, 1048, 1126
BmuI	ACTGGG	1 cut(s)	142
BpiI	GAAGAC	2 cut(s)	27, 191
BplI	GAGNNNNNCTC	4 cut(s)	811, 843, 854, 886
Bpu10I	CCTNAGC	1 cut(s)	828
Bsa29I	ATCGAT	1 cut(s)	585
BsaAI	YACGTR	1 cut(s)	879
BsaJI	CCNNGG	2 cut(s)	699, 924
Bsc4I	CCNNNNNNNGG	3 cut(s)	603, 930, 1293
Bse1I	ACTGG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	700
BseCI	ATCGAT	1 cut(s)	585
BseDI	CCNNGG	2 cut(s)	699, 924
BseGI	GGATG	6 cut(s)	324, 481, 660, 905, 910, 1063
BseLI	CCNNNNNNNGG	3 cut(s)	603, 930, 1293
BseMII	CTCAG	5 cut(s)	27, 463, 719, 782, 842
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	3 cut(s)	545, 553, 785
Bsh1236I	CGCG	1 cut(s)	142
BshFI	GGCC	3 cut(s)	130, 596, 786
BshNI	GGYRCC	1 cut(s)	239
BshVI	ATCGAT	1 cut(s)	585
BsiHKAI	GWGCWC	4 cut(s)	14, 163, 213, 763
BsiSI	CCGG	1 cut(s)	501
BslI	CCNNNNNNNGG	3 cut(s)	603, 930, 1293
BsmAI	GTCTC	1 cut(s)	662
BsmI	GAATGC	3 cut(s)	502, 776, 1148
BsnI	GGCC	3 cut(s)	130, 596, 786
Bsp1286I	GDGCHC	6 cut(s)	14, 163, 213, 450, 706, 763
Bsp143I	GATC	9 cut(s)	37, 52, 122, 273, 370, 436, 582, 615, 853
BspACI	CCGC	3 cut(s)	80, 116, 517
BspANI	GGCC	3 cut(s)	130, 596, 786
BspCNI	CTCAG	5 cut(s)	26, 462, 718, 783, 841
BspDI	ATCGAT	1 cut(s)	585
BspFNI	CGCG	1 cut(s)	142
BspHI	TCATGA	1 cut(s)	396
BspLI	GGNNCC	3 cut(s)	129, 241, 647
BspMI	ACCTGC	1 cut(s)	1307
BspPI	GGATC	3 cut(s)	130, 365, 861
BspT107I	GGYRCC	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	699, 924
BssMI	GATC	9 cut(s)	37, 52, 122, 273, 370, 436, 582, 615, 853
BssSI	CACGAG	1 cut(s)	482
BssT1I	CCWWGG	1 cut(s)	924
Bst2BI	CACGAG	1 cut(s)	482
Bst2UI	CCWGG	1 cut(s)	700
Bst4CI	ACNGT	3 cut(s)	34, 341, 1094
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstBAI	YACGTR	1 cut(s)	879
BstC8I	GCNNGC	2 cut(s)	788, 961
BstDEI	CTNAG	5 cut(s)	13, 449, 705, 791, 828
BstF5I	GGATG	6 cut(s)	324, 481, 660, 905, 910, 1063
BstFNI	CGCG	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	9 cut(s)	40, 55, 125, 276, 373, 439, 585, 618, 856
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	9 cut(s)	37, 52, 122, 273, 370, 436, 582, 615, 853
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 575, 1145, 1187
BstNI	CCWGG	1 cut(s)	700
BstSCI	CCNGG	1 cut(s)	698
BstSFI	CTRYAG	2 cut(s)	33, 195
BstSNI	TACGTA	1 cut(s)	879
BstUI	CGCG	1 cut(s)	142
BstV1I	GCAGC	3 cut(s)	545, 553, 785
BstV2I	GAAGAC	2 cut(s)	27, 191
Bsu15I	ATCGAT	1 cut(s)	585
BsuRI	GGCC	3 cut(s)	130, 596, 786
BsuTUI	ATCGAT	1 cut(s)	585
BtsCI	GGATG	6 cut(s)	324, 481, 660, 905, 910, 1063
BtsIMutI	CAGTG	2 cut(s)	30, 1099
BveI	ACCTGC	1 cut(s)	1307
Cac8I	GCNNGC	2 cut(s)	788, 961
CciI	TCATGA	1 cut(s)	396
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	3 cut(s)	128, 645, 1296
ClaI	ATCGAT	1 cut(s)	585
Csp6I	GTAC	1 cut(s)	610
CviAII	CATG	6 cut(s)	397, 575, 619, 994, 1054, 1331
CviQI	GTAC	1 cut(s)	610
DdeI	CTNAG	5 cut(s)	13, 449, 705, 791, 828
DpnI	GATC	9 cut(s)	39, 54, 124, 275, 372, 438, 584, 617, 855
DpnII	GATC	9 cut(s)	37, 52, 122, 273, 370, 436, 582, 615, 853
EaeI	YGGCCR	1 cut(s)	594
Eco105I	TACGTA	1 cut(s)	879
Eco130I	CCWWGG	1 cut(s)	924
Eco24I	GRGCYC	2 cut(s)	450, 706
Eco47I	GGWCC	2 cut(s)	645, 1296
EcoO109I	RGGNCCY	2 cut(s)	645, 1296
EcoRII	CCWGG	1 cut(s)	698
EcoT14I	CCWWGG	1 cut(s)	924
EcoT38I	GRGCYC	2 cut(s)	450, 706
ErhI	CCWWGG	1 cut(s)	924
FaeI	CATG	6 cut(s)	400, 578, 622, 997, 1057, 1334
FalI	AAGNNNNNCTT	2 cut(s)	842, 874
FatI	CATG	6 cut(s)	396, 574, 618, 993, 1053, 1330
FauNDI	CATATG	1 cut(s)	1111
FbaI	TGATCA	2 cut(s)	52, 273
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	3 cut(s)	534, 542, 774
FokI	GGATG	6 cut(s)	331, 488, 667, 897, 912, 1070
FriOI	GRGCYC	2 cut(s)	450, 706
Fsp4HI	GCNGC	3 cut(s)	534, 542, 774
FspBI	CTAG	1 cut(s)	1062
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	3 cut(s)	534, 542, 774
HaeIII	GGCC	3 cut(s)	130, 596, 786
HapII	CCGG	1 cut(s)	501
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	6 cut(s)	400, 578, 622, 997, 1057, 1334
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HinfI	GANTC	4 cut(s)	489, 587, 869, 1173
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	2 cut(s)	77, 450
Hpy166II	GTNNAC	3 cut(s)	153, 634, 1027
Hpy188I	TCNGA	4 cut(s)	16, 452, 708, 765
Hpy188III	TCNNGA	9 cut(s)	56, 280, 330, 397, 484, 493, 830, 971, 1237
Hpy8I	GTNNAC	3 cut(s)	153, 634, 1027
Hpy99I	CGWCG	4 cut(s)	157, 224, 227, 230
HpyAV	CCTTC	5 cut(s)	194, 703, 817, 844, 1201
HpyCH4III	ACNGT	3 cut(s)	34, 341, 1094
HpyCH4IV	ACGT	2 cut(s)	878, 1242
HpyCH4V	TGCA	7 cut(s)	390, 512, 658, 804, 1011, 1105, 1302
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 575, 1145, 1187
HpyF3I	CTNAG	5 cut(s)	13, 449, 705, 791, 828
HpySE526I	ACGT	2 cut(s)	878, 1242
Hsp92II	CATG	6 cut(s)	400, 578, 622, 997, 1057, 1334
HspAI	GCGC	1 cut(s)	140
Ksp22I	TGATCA	2 cut(s)	52, 273
Kzo9I	GATC	9 cut(s)	37, 52, 122, 273, 370, 436, 582, 615, 853
LmnI	GCTCC	3 cut(s)	203, 625, 766
Lsp1109I	GCAGC	3 cut(s)	545, 553, 785
LweI	GCATC	6 cut(s)	312, 645, 919, 946, 1048, 1126
MaeI	CTAG	1 cut(s)	1062
MaeII	ACGT	2 cut(s)	878, 1242
MaeIII	GTNAC	3 cut(s)	259, 979, 1279
MalI	GATC	9 cut(s)	39, 54, 124, 275, 372, 438, 584, 617, 855
MboI	GATC	9 cut(s)	37, 52, 122, 273, 370, 436, 582, 615, 853
MboII	GAAGA	4 cut(s)	32, 193, 196, 1145
MfeI	CAATTG	1 cut(s)	107
MhlI	GDGCHC	6 cut(s)	14, 163, 213, 450, 706, 763
MlsI	TGGCCA	1 cut(s)	596
MluCI	AATT	9 cut(s)	107, 302, 334, 453, 766, 891, 916, 1223, 1288
MluNI	TGGCCA	1 cut(s)	596
MlyI	GAGTC	1 cut(s)	863
MmeI	TCCRAC	2 cut(s)	100, 398
Mox20I	TGGCCA	1 cut(s)	596
MscI	TGGCCA	1 cut(s)	596
MseI	TTAA	8 cut(s)	246, 564, 602, 735, 890, 1227, 1256, 1313
MslI	CAYNNNNRTG	1 cut(s)	1110
Msp20I	TGGCCA	1 cut(s)	596
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	1 cut(s)	700
MunI	CAATTG	1 cut(s)	107
Mva1269I	GAATGC	3 cut(s)	502, 776, 1148
MvaI	CCWGG	1 cut(s)	700
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	4 cut(s)	248, 575, 1145, 1187
NdeI	CATATG	1 cut(s)	1111
NdeII	GATC	9 cut(s)	37, 52, 122, 273, 370, 436, 582, 615, 853
NlaIII	CATG	6 cut(s)	400, 578, 622, 997, 1057, 1334
NlaIV	GGNNCC	3 cut(s)	129, 241, 647
NmeAIII	GCCGAG	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	979
PagI	TCATGA	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PctI	GAATGC	3 cut(s)	502, 776, 1148
PfeI	GAWTC	3 cut(s)	489, 587, 1173
PkrI	GCNGC	3 cut(s)	535, 543, 775
PleI	GAGTC	1 cut(s)	863
PpsI	GAGTC	1 cut(s)	863
Ppu21I	YACGTR	1 cut(s)	879
PpuMI	RGGWCCY	2 cut(s)	645, 1296
PshBI	ATTAAT	1 cut(s)	890
Psp5II	RGGWCCY	2 cut(s)	645, 1296
Psp6I	CCWGG	1 cut(s)	698
PspGI	CCWGG	1 cut(s)	698
PspN4I	GGNNCC	3 cut(s)	129, 241, 647
PspPI	GGNCC	3 cut(s)	128, 645, 1296
PspPPI	RGGWCCY	2 cut(s)	645, 1296
PsrI	GAACNNNNNNTAC	2 cut(s)	462, 494
RsaI	GTAC	1 cut(s)	611
RsaNI	GTAC	1 cut(s)	610
RseI	CAYNNNNRTG	1 cut(s)	1110
SalI	GTCGAC	1 cut(s)	151
SaqAI	TTAA	8 cut(s)	246, 564, 602, 735, 890, 1227, 1256, 1313
SatI	GCNGC	3 cut(s)	534, 542, 774
Sau3AI	GATC	9 cut(s)	37, 52, 122, 273, 370, 436, 582, 615, 853
Sau96I	GGNCC	3 cut(s)	128, 645, 1296
SchI	GAGTC	1 cut(s)	863
ScrFI	CCNGG	1 cut(s)	700
SduI	GDGCHC	6 cut(s)	14, 163, 213, 450, 706, 763
SfaNI	GCATC	6 cut(s)	312, 645, 919, 946, 1048, 1126
SfcI	CTRYAG	2 cut(s)	33, 195
SinI	GGWCC	2 cut(s)	645, 1296
SmiMI	CAYNNNNRTG	1 cut(s)	1110
SnaBI	TACGTA	1 cut(s)	879
Sse9I	AATT	9 cut(s)	107, 302, 334, 453, 766, 891, 916, 1223, 1288
SsiI	CCGC	3 cut(s)	80, 116, 517
SspMI	CTAG	1 cut(s)	1062
StyD4I	CCNGG	1 cut(s)	698
StyI	CCWWGG	1 cut(s)	924
TaaI	ACNGT	3 cut(s)	34, 341, 1094
TaiI	ACGT	2 cut(s)	881, 1245
TaqI	TCGA	4 cut(s)	152, 163, 435, 585
TasI	AATT	9 cut(s)	107, 302, 334, 453, 766, 891, 916, 1223, 1288
TfiI	GAWTC	3 cut(s)	489, 587, 1173
Tru1I	TTAA	8 cut(s)	246, 564, 602, 735, 890, 1227, 1256, 1313
Tru9I	TTAA	8 cut(s)	246, 564, 602, 735, 890, 1227, 1256, 1313
TscAI	CASTG	2 cut(s)	37, 1099
TseFI	GTSAC	1 cut(s)	979
TseI	GCWGC	3 cut(s)	533, 541, 773
Tsp45I	GTSAC	1 cut(s)	979
TspDTI	ATGAA	1 cut(s)	863
TspRI	CASTG	2 cut(s)	37, 1099
VpaK11BI	GGWCC	2 cut(s)	645, 1296
VspI	ATTAAT	1 cut(s)	890
XapI	RAATTY	4 cut(s)	453, 766, 916, 1223
XmiI	GTMKAC	1 cut(s)	152
XspI	CTAG	1 cut(s)	1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.