FvH4_5g25760

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
17251199 .. 17253728
2530 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g25760.t1

Sequence Viewer

Length: 1359 bp
ATGGCCTCCCACGCAGCTCTAGCTTCTACAAGAATCCCAGCCAACACCAGGCTTCCCTCCAAGACTTCCCACTCTTATCCCACTCAGTGCTTCTCCAAGAGGCTGGAAGTTGCTGAATTCTCTGGCTTGAGATCCAGTTCATGTTTGACCTATGCAAGCAATGGTAGGGAGGCATCATTATTTGATGCTGTGGCTGCTCAACTTACTCCCCAGACTTCAGGATCAGCTCCTGTTAAGGGAGAAACAGTGGCCAAATTGAAGGTGGCAATCAACGGATTTGGACGTATTGGAAGAAACTTTCTCCGGTGCTGGCATGGCAGGAAGGACTCACCCCTTGAGGTCATTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCCCACTTGCTGAAATATGATTCTATGCTGGGTACTTTCAAAGCAGATATAAAAATAGTGGACAACGAAACTATCAGTGTTGATGGTAAGCCTATCAAGGTTGTATCTAACAGAGATCCCCTGAAGCTTCCATGGGCTGAGATGGGCATTGACATCGTTATTGAGGGAACAGGAGTATTTGTTGATGGCCCTGGTGCTGGTAAACACATCCAAGCTGGTGCTAAGAAAGTTATCATTACTGCTCCAGCAAAAGGTGCTGATATTCCTACCTATGTTGTAGGAGTGAATGAAAAAGATTATGGCCATAGCGTCGCAGACATCGTGAGCAATGCTTCTTGCACCACAAATTGTCTGGCTCCATTTGTGAAGGTCCTCGATGAAGAATTCGGTATTGTCAAGGGAACCATGACAACTACTCATTCCTACACTGGAGACCAGAGACTGTTGGATGCTTCACACAGGGACTTGAGGAGAGCAAGGGCAGCAGCATTGAACATAGTGCCCACAAGCACCGGTGCAGCTAAGGCTGTATCTCTAGTACTGCCTCAGCTCAAAGGCAAGCTCAATGGCATTGCCCTCCGTGTGCCAACACCTAACGTGTCAGTAGTAGACCTTGTTATTAATGTTGCGAAGAAGGGCATTACAGCAGAAGATGTCAATGGAGCCTTCAGAAAGGCAGCTGATGGGCCATTGAAGGGCATATTAGCAGTGTGTGATGTTCCTCTTGTGTCTGTAGACTTCAGGTGCACTGATGTTTCTTCCACCATCGACTCTTCCTTGACCATGGTCATGGGTGATGATATGGTCAAGGTTGTGGCCTGGTACGACAATGAATGGGGATACAGCCAAAGGGTTGTGGATTTGGCACATTTGGTTGCAAGCAAGTGGCCAGGGACACCAGTAGAGGGAAGCGGAGACCCGTTGGAGGATTTCTGCAAGGACAACCCTGCTGATGAAGAGTGCAAAGTCTATGAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

453

Amino Acids

48.05

Weight (kDa)

7.09

Isoelectric Point (pI)

23.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 87 - 188 3.7e-31 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 244 - 401 1.4e-64 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 987, 1113
AciI CCGC 1 cut(s) 1290
AclWI GGATC 3 cut(s) 126, 229, 488
AcoI YGGCCR 3 cut(s) 249, 679, 1265
AcsI RAATTY 2 cut(s) 116, 761
AcuI CTGAAG 4 cut(s) 201, 521, 1030, 1102
AdeI CACNNNGTG 1 cut(s) 87
AfaI GTAC 3 cut(s) 412, 918, 1202
AfiI CCNNNNNNNGG 7 cut(s) 48, 236, 575, 629, 1073, 1283, 1303
AflIII ACRYGT 1 cut(s) 975
AgeI ACCGGT 1 cut(s) 890
AgsI TTSAA 4 cut(s) 259, 418, 871, 1072
AjnI CCWGG 4 cut(s) 47, 568, 1196, 1267
Alw21I GWGCWC 1 cut(s) 1127
Alw26I GTCTC 3 cut(s) 804, 811, 1287
Alw44I GTGCAC 1 cut(s) 1123
AlwI GGATC 3 cut(s) 126, 229, 488
AlwNI CAGNNNCTG 2 cut(s) 230, 820
AoxI GGCC 7 cut(s) 3, 249, 565, 679, 1064, 1194, 1265
ApaLI GTGCAC 1 cut(s) 1123
ApeKI GCWGC 6 cut(s) 14, 194, 860, 863, 896, 1055
ApoI RAATTY 2 cut(s) 116, 761
AseI ATTAAT 1 cut(s) 999
AsiGI ACCGGT 1 cut(s) 890
AspS9I GGNCC 3 cut(s) 566, 748, 1064
AsuHPI GGTGA 2 cut(s) 321, 1184
AvaII GGWCC 1 cut(s) 748
BaeGI GKGCMC 2 cut(s) 882, 1127
BalI TGGCCA 3 cut(s) 251, 681, 1267
Bbv12I GWGCWC 1 cut(s) 1127
BbvCI CCTCAGC 1 cut(s) 924
BbvI GCAGC 6 cut(s) 26, 181, 872, 875, 908, 1067
BccI CCATC 5 cut(s) 455, 514, 557, 1055, 1151
BcgI CGANNNNNNTGC 2 cut(s) 514, 548
BciT130I CCWGG 4 cut(s) 49, 570, 1198, 1269
BciVI GTATCC 1 cut(s) 1211
BcoDI GTCTC 3 cut(s) 804, 811, 1287
BfaI CTAG 2 cut(s) 20, 914
BfmI CTRYAG 1 cut(s) 1110
BfuI GTATCC 1 cut(s) 1211
BisI GCNGC 6 cut(s) 15, 195, 861, 864, 897, 1056
BlsI GCNGC 6 cut(s) 16, 196, 862, 865, 898, 1057
BmcAI AGTACT 1 cut(s) 918
Bme1390I CCNGG 4 cut(s) 49, 570, 1198, 1269
Bme18I GGWCC 1 cut(s) 748
BmgT120I GGNCC 3 cut(s) 566, 748, 1064
BmiI GGNNCC 3 cut(s) 735, 781, 1042
BmrFI CCNGG 4 cut(s) 49, 570, 1198, 1269
BmsI GCATC 3 cut(s) 175, 182, 817
BoxI GACNNNNGTC 1 cut(s) 1163
BpmI CTGGAG 2 cut(s) 606, 828
Bpu10I CCTNAGC 2 cut(s) 900, 924
BpuEI CTTGAG 3 cut(s) 148, 356, 865
BsaI GGTCTC 2 cut(s) 804, 1287
BsaJI CCNNGG 4 cut(s) 509, 568, 1161, 1268
BsaWI WCCGGW 2 cut(s) 303, 890
BsaXI ACNNNNNCTCC 4 cut(s) 231, 261, 543, 573
Bsc4I CCNNNNNNNGG 7 cut(s) 48, 236, 575, 629, 1073, 1283, 1303
Bse118I RCCGGY 1 cut(s) 890
Bse1I ACTGG 3 cut(s) 135, 811, 1277
Bse3DI GCAATG 3 cut(s) 166, 712, 948
BseBI CCWGG 4 cut(s) 49, 570, 1198, 1269
BseDI CCNNGG 4 cut(s) 509, 568, 1161, 1268
BseGI GGATG 2 cut(s) 585, 832
BseLI CCNNNNNNNGG 7 cut(s) 48, 236, 575, 629, 1073, 1283, 1303
BseMI GCAATG 3 cut(s) 166, 712, 948
BseMII CTCAG 3 cut(s) 98, 507, 938
BseNI ACTGG 3 cut(s) 135, 811, 1277
BseRI GAGGAG 1 cut(s) 862
BseSI GKGCMC 2 cut(s) 882, 1127
BseXI GCAGC 6 cut(s) 26, 181, 872, 875, 908, 1067
BseYI CCCAGC 2 cut(s) 37, 406
BsgI GTGCAG 1 cut(s) 915
BshFI GGCC 7 cut(s) 5, 251, 567, 681, 1066, 1196, 1267
BshTI ACCGGT 1 cut(s) 890
BsiHKAI GWGCWC 1 cut(s) 1127
BsiSI CCGG 2 cut(s) 304, 891
BslFI GGGAC 2 cut(s) 854, 1285
BslI CCNNNNNNNGG 7 cut(s) 48, 236, 575, 629, 1073, 1283, 1303
BsmAI GTCTC 3 cut(s) 804, 811, 1287
BsmFI GGGAC 2 cut(s) 854, 1285
BsmI GAATGC 1 cut(s) 379
BsnI GGCC 7 cut(s) 5, 251, 567, 681, 1066, 1196, 1267
Bso31I GGTCTC 2 cut(s) 804, 1287
Bsp1286I GDGCHC 2 cut(s) 882, 1127
Bsp143I GATC 3 cut(s) 131, 221, 493
Bsp19I CCATGG 2 cut(s) 509, 1161
BspACI CCGC 1 cut(s) 1290
BspANI GGCC 7 cut(s) 5, 251, 567, 681, 1066, 1196, 1267
BspCNI CTCAG 3 cut(s) 97, 508, 937
BspLI GGNNCC 3 cut(s) 735, 781, 1042
BspPI GGATC 3 cut(s) 126, 229, 488
BspTNI GGTCTC 2 cut(s) 804, 1287
BsrDI GCAATG 3 cut(s) 166, 712, 948
BsrFI RCCGGY 1 cut(s) 890
BsrI ACTGG 3 cut(s) 135, 811, 1277
BssAI RCCGGY 1 cut(s) 890
BssECI CCNNGG 4 cut(s) 509, 568, 1161, 1268
BssMI GATC 3 cut(s) 131, 221, 493
BssT1I CCWWGG 2 cut(s) 509, 1161
Bst2UI CCWGG 4 cut(s) 49, 570, 1198, 1269
Bst4CI ACNGT 3 cut(s) 247, 359, 822
Bst6I CTCTTC 2 cut(s) 1156, 1329
BstAPI GCANNNNNTGC 1 cut(s) 632
BstC8I GCNNGC 4 cut(s) 157, 311, 938, 1258
BstDEI CTNAG 6 cut(s) 84, 516, 600, 900, 924, 1356
BstDSI CCRYGG 2 cut(s) 509, 1161
BstF5I GGATG 2 cut(s) 585, 832
BstKTI GATC 3 cut(s) 134, 224, 496
BstMAI GTCTC 3 cut(s) 804, 811, 1287
BstMBI GATC 3 cut(s) 131, 221, 493
BstMWI GCNNNNNNNGC 7 cut(s) 11, 20, 194, 315, 632, 860, 902
BstNI CCWGG 4 cut(s) 49, 570, 1198, 1269
BstPAI GACNNNNGTC 1 cut(s) 1163
BstSCI CCNGG 4 cut(s) 47, 568, 1196, 1267
BstSFI CTRYAG 1 cut(s) 1110
BstSLI GKGCMC 2 cut(s) 882, 1127
BstV1I GCAGC 6 cut(s) 26, 181, 872, 875, 908, 1067
BstX2I RGATCY 2 cut(s) 131, 493
BstXI CCANNNNNNTGG 2 cut(s) 103, 1168
BstYI RGATCY 2 cut(s) 131, 493
BsuI GTATCC 1 cut(s) 1211
BsuRI GGCC 7 cut(s) 5, 251, 567, 681, 1066, 1196, 1267
BtgI CCRYGG 2 cut(s) 509, 1161
BtsCI GGATG 2 cut(s) 585, 832
BtsI GCAGTG 1 cut(s) 1092
BtsIMutI CAGTG 7 cut(s) 92, 252, 364, 460, 804, 1092, 1125
Cac8I GCNNGC 4 cut(s) 157, 311, 938, 1258
CaiI CAGNNNCTG 2 cut(s) 230, 820
Cfr10I RCCGGY 1 cut(s) 890
Cfr13I GGNCC 3 cut(s) 566, 748, 1064
CseI GACGC 1 cut(s) 676
Csp6I GTAC 3 cut(s) 411, 917, 1201
CspAI ACCGGT 1 cut(s) 890
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviAII CATG 6 cut(s) 141, 314, 510, 784, 1162, 1168
CviQI GTAC 3 cut(s) 411, 917, 1201
DdeI CTNAG 6 cut(s) 84, 516, 600, 900, 924, 1356
DpnI GATC 3 cut(s) 133, 223, 495
DpnII GATC 3 cut(s) 131, 221, 493
DraIII CACNNNGTG 1 cut(s) 87
EaeI YGGCCR 3 cut(s) 249, 679, 1265
Eam1104I CTCTTC 2 cut(s) 1156, 1329
EarI CTCTTC 2 cut(s) 1156, 1329
Eco130I CCWWGG 2 cut(s) 509, 1161
Eco31I GGTCTC 2 cut(s) 804, 1287
Eco47I GGWCC 1 cut(s) 748
Eco57I CTGAAG 4 cut(s) 201, 521, 1030, 1102
EcoO109I RGGNCCY 1 cut(s) 748
EcoRI GAATTC 2 cut(s) 116, 761
EcoRII CCWGG 4 cut(s) 47, 568, 1196, 1267
EcoT14I CCWWGG 2 cut(s) 509, 1161
ErhI CCWWGG 2 cut(s) 509, 1161
FaeI CATG 6 cut(s) 144, 317, 513, 787, 1165, 1171
FaqI GGGAC 2 cut(s) 854, 1285
FatI CATG 6 cut(s) 140, 313, 509, 783, 1161, 1167
FblI GTMKAC 2 cut(s) 987, 1113
Fnu4HI GCNGC 6 cut(s) 15, 195, 861, 864, 897, 1056
FokI GGATG 2 cut(s) 572, 839
Fsp4HI GCNGC 6 cut(s) 15, 195, 861, 864, 897, 1056
FspBI CTAG 2 cut(s) 20, 914
GluI GCNGC 6 cut(s) 15, 195, 861, 864, 897, 1056
GsaI CCCAGC 2 cut(s) 41, 410
GsuI CTGGAG 2 cut(s) 606, 828
HaeIII GGCC 7 cut(s) 5, 251, 567, 681, 1066, 1196, 1267
HapII CCGG 2 cut(s) 304, 891
HgaI GACGC 1 cut(s) 676
Hin1II CATG 6 cut(s) 144, 317, 513, 787, 1165, 1171
HindIII AAGCTT 2 cut(s) 503, 1353
HinfI GANTC 4 cut(s) 33, 326, 398, 1148
HpaII CCGG 2 cut(s) 304, 891
HphI GGTGA 2 cut(s) 321, 1184
Hpy166II GTNNAC 5 cut(s) 439, 581, 988, 1114, 1125
Hpy188I TCNGA 1 cut(s) 1049
Hpy188III TCNNGA 3 cut(s) 219, 370, 700
Hpy8I GTNNAC 5 cut(s) 439, 581, 988, 1114, 1125
Hpy99I CGWCG 1 cut(s) 692
HpyAV CCTTC 6 cut(s) 253, 316, 739, 1006, 1054, 1066
HpyCH4III ACNGT 3 cut(s) 247, 359, 822
HpyCH4IV ACGT 2 cut(s) 283, 975
HpyCH4V TGCA 7 cut(s) 155, 717, 896, 1125, 1256, 1314, 1341
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 20, 194, 315, 632, 860, 902
HpyF3I CTNAG 6 cut(s) 84, 516, 600, 900, 924, 1356
HpySE526I ACGT 2 cut(s) 283, 975
Hsp92II CATG 6 cut(s) 144, 317, 513, 787, 1165, 1171
Kzo9I GATC 3 cut(s) 131, 221, 493
LmnI GCTCC 4 cut(s) 232, 625, 739, 1040
Lsp1109I GCAGC 6 cut(s) 26, 181, 872, 875, 908, 1067
LweI GCATC 3 cut(s) 175, 182, 817
MaeI CTAG 2 cut(s) 20, 914
MaeII ACGT 2 cut(s) 283, 975
MalI GATC 3 cut(s) 133, 223, 495
MboI GATC 3 cut(s) 131, 221, 493
MboII GAAGA 7 cut(s) 303, 770, 1021, 1040, 1128, 1143, 1346
MflI RGATCY 2 cut(s) 131, 493
MhlI GDGCHC 2 cut(s) 882, 1127
MlsI TGGCCA 3 cut(s) 251, 681, 1267
MluCI AATT 4 cut(s) 116, 254, 724, 761
MluNI TGGCCA 3 cut(s) 251, 681, 1267
MlyI GAGTC 2 cut(s) 320, 1142
MmeI TCCRAC 2 cut(s) 804, 1281
Mox20I TGGCCA 3 cut(s) 251, 681, 1267
MscI TGGCCA 3 cut(s) 251, 681, 1267
MseI TTAA 2 cut(s) 234, 999
MslI CAYNNNNRTG 1 cut(s) 1166
Msp20I TGGCCA 3 cut(s) 251, 681, 1267
MspA1I CMGCKG 1 cut(s) 1058
MspI CCGG 2 cut(s) 304, 891
MspR9I CCNGG 4 cut(s) 49, 570, 1198, 1269
Mva1269I GAATGC 1 cut(s) 379
MvaI CCWGG 4 cut(s) 49, 570, 1198, 1269
MwoI GCNNNNNNNGC 7 cut(s) 11, 20, 194, 315, 632, 860, 902
NcoI CCATGG 2 cut(s) 509, 1161
NdeII GATC 3 cut(s) 131, 221, 493
NlaIII CATG 6 cut(s) 144, 317, 513, 787, 1165, 1171
NlaIV GGNNCC 3 cut(s) 735, 781, 1042
PcsI WCGNNNNNNNCGW 1 cut(s) 696
PctI GAATGC 1 cut(s) 379
PfeI GAWTC 2 cut(s) 33, 398
PinAI ACCGGT 1 cut(s) 890
PkrI GCNGC 6 cut(s) 16, 196, 862, 865, 898, 1057
PleI GAGTC 2 cut(s) 320, 1142
PpsI GAGTC 2 cut(s) 320, 1142
PpuMI RGGWCCY 1 cut(s) 748
PshAI GACNNNNGTC 1 cut(s) 1163
PshBI ATTAAT 1 cut(s) 999
Psp5II RGGWCCY 1 cut(s) 748
Psp6I CCWGG 4 cut(s) 47, 568, 1196, 1267
PspFI CCCAGC 2 cut(s) 37, 406
PspGI CCWGG 4 cut(s) 47, 568, 1196, 1267
PspN4I GGNNCC 3 cut(s) 735, 781, 1042
PspPI GGNCC 3 cut(s) 566, 748, 1064
PspPPI RGGWCCY 1 cut(s) 748
PstNI CAGNNNCTG 2 cut(s) 230, 820
PsuI RGATCY 2 cut(s) 131, 493
PvuII CAGCTG 1 cut(s) 1058
RsaI GTAC 3 cut(s) 412, 918, 1202
RsaNI GTAC 3 cut(s) 411, 917, 1201
RseI CAYNNNNRTG 1 cut(s) 1166
SaqAI TTAA 2 cut(s) 234, 999
SatI GCNGC 6 cut(s) 15, 195, 861, 864, 897, 1056
Sau3AI GATC 3 cut(s) 131, 221, 493
Sau96I GGNCC 3 cut(s) 566, 748, 1064
ScaI AGTACT 1 cut(s) 918
SchI GAGTC 2 cut(s) 320, 1142
ScrFI CCNGG 4 cut(s) 49, 570, 1198, 1269
SduI GDGCHC 2 cut(s) 882, 1127
SfaNI GCATC 3 cut(s) 175, 182, 817
SfcI CTRYAG 1 cut(s) 1110
SgrAI CRCCGGYG 1 cut(s) 890
SinI GGWCC 1 cut(s) 748
SmiMI CAYNNNNRTG 1 cut(s) 1166
SmlI CTYRAG 3 cut(s) 127, 335, 844
SmoI CTYRAG 3 cut(s) 127, 335, 844
Sse9I AATT 4 cut(s) 116, 254, 724, 761
SsiI CCGC 1 cut(s) 1290
SspMI CTAG 2 cut(s) 20, 914
StyD4I CCNGG 4 cut(s) 47, 568, 1196, 1267
StyI CCWWGG 2 cut(s) 509, 1161
TaaI ACNGT 3 cut(s) 247, 359, 822
TaiI ACGT 2 cut(s) 286, 978
TaqI TCGA 2 cut(s) 753, 1146
TasI AATT 4 cut(s) 116, 254, 724, 761
TatI WGTACW 1 cut(s) 916
TfiI GAWTC 2 cut(s) 33, 398
Tru1I TTAA 2 cut(s) 234, 999
Tru9I TTAA 2 cut(s) 234, 999
TscAI CASTG 7 cut(s) 92, 252, 364, 460, 811, 1092, 1132
TseI GCWGC 6 cut(s) 14, 194, 860, 863, 896, 1055
TspDTI ATGAA 5 cut(s) 129, 681, 771, 1224, 1347
TspGWI ACGGA 2 cut(s) 288, 947
TspRI CASTG 7 cut(s) 92, 252, 364, 460, 811, 1092, 1132
VneI GTGCAC 1 cut(s) 1123
VpaK11BI GGWCC 1 cut(s) 748
VspI ATTAAT 1 cut(s) 999
XapI RAATTY 2 cut(s) 116, 761
XcmI CCANNNNNNNNNTGG 2 cut(s) 259, 727
XmiI GTMKAC 2 cut(s) 987, 1113
XspI CTAG 2 cut(s) 20, 914
ZrmI AGTACT 1 cut(s) 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.